Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

16702963 .. 16703870

Gene Structure 908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGTTGTTTACTATCTTCATCAGCATAATCTTGCTACCAATTGTTGGCAATGCAGCAGAACATGCAGGAGCAATCATATTTGCTTTCAAGAACAAGCTGGATATAACTCTTGGTGTTGCTTTGGGGTCTGCAACTCAAATTGCCATGCTTGTGGTTCCGATGTGCGTGATCATTGCTTGGATAATGGGAATTAACATCGATCTCAATTTCAGTGTCATTGAGACTGGCTCTTTGGCTTTATCAATACTTGCTGTGGCCTTCACATTACAGGATGGCAGTTCCCACTACCTGAAGGGATTGGTTCTTTTGCTGTGCTACATTATCATTGCAGCCTGCTTCTTCGTAAACAAATCTCCGCTTCATCAATCGGACATCCTGAACCCGGGACTTCAAACGTCCACTGGAGCAGTTCTTGGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006793 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006882 GO:0007275 GO:0008150 GO:0008152 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0015075 GO:0015077 GO:0015078 GO:0015085 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015368 GO:0015369 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022622 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0031090 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046916 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051139 GO:0051179 GO:0051234 GO:0051592 GO:0051704 GO:0051707 GO:0055062 GO:0055065 GO:0055069 GO:0055071 GO:0055074 GO:0055076 GO:0055080 GO:0055081 GO:0055082 GO:0055083 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0072503 GO:0072505 GO:0072506 GO:0072507 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805 GO:0099402 GO:0099516 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

141

Amino Acids

14.74

Weight (kDa)

5.76

Isoelectric Point (pI)

34.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_Ca_ex	PF01699	6 - 114	3.8e-14	Sodium/calcium exchanger protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	44
AciI	CCGC	1 cut(s)	356
AcuI	CTGAAG	1 cut(s)	311
AfiI	CCNNNNNNNGG	2 cut(s)	44, 382
AgsI	TTSAA	2 cut(s)	88, 392
AluBI	AGCT	2 cut(s)	97, 419
AluI	AGCT	2 cut(s)	97, 419
Alw26I	GTCTC	1 cut(s)	215
Ama87I	CYCGRG	1 cut(s)	382
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	2 cut(s)	53, 329
ArsI	GACNNNNNNTTYG	2 cut(s)	214, 246
AsuC2I	CCSGG	2 cut(s)	383, 384
AvaI	CYCGRG	1 cut(s)	382
BbvI	GCAGC	2 cut(s)	65, 341
BccI	CCATC	1 cut(s)	266
BclI	TGATCA	1 cut(s)	168
BcnI	CCSGG	2 cut(s)	383, 384
BcoDI	GTCTC	1 cut(s)	215
BisI	GCNGC	2 cut(s)	54, 330
BlsI	GCNGC	2 cut(s)	55, 331
Bme1390I	CCNGG	2 cut(s)	383, 384
BmeT110I	CYCGRG	1 cut(s)	382
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	2 cut(s)	383, 384
BplI	GAGNNNNNCTC	2 cut(s)	212, 244
BpmI	CTGGAG	1 cut(s)	423
BpuMI	CCSGG	2 cut(s)	383, 384
Bsa29I	ATCGAT	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	382
Bsc4I	CCNNNNNNNGG	2 cut(s)	44, 382
Bse1I	ACTGG	2 cut(s)	229, 406
Bse3DI	GCAATG	3 cut(s)	55, 171, 324
BseCI	ATCGAT	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	382
BseGI	GGATG	2 cut(s)	277, 372
BseLI	CCNNNNNNNGG	2 cut(s)	44, 382
BseMI	GCAATG	3 cut(s)	55, 171, 324
BseNI	ACTGG	2 cut(s)	229, 406
BseXI	GCAGC	2 cut(s)	65, 341
BshFI	GGCC	1 cut(s)	257
BshVI	ATCGAT	1 cut(s)	198
BsiHKCI	CYCGRG	1 cut(s)	382
BsiSI	CCGG	1 cut(s)	383
BslFI	GGGAC	1 cut(s)	399
BslI	CCNNNNNNNGG	2 cut(s)	44, 382
BsmAI	GTCTC	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	399
BsnI	GGCC	1 cut(s)	257
BsoBI	CYCGRG	1 cut(s)	382
Bsp143I	GATC	2 cut(s)	168, 199
BspACI	CCGC	1 cut(s)	356
BspANI	GGCC	1 cut(s)	257
BspDI	ATCGAT	1 cut(s)	198
BspLI	GGNNCC	1 cut(s)	156
BsrDI	GCAATG	3 cut(s)	55, 171, 324
BsrI	ACTGG	2 cut(s)	229, 406
BssECI	CCNNGG	1 cut(s)	382
BssMI	GATC	2 cut(s)	168, 199
BstAPI	GCANNNNNTGC	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	334
BstF5I	GGATG	2 cut(s)	277, 372
BstKTI	GATC	2 cut(s)	171, 202
BstMAI	GTCTC	1 cut(s)	215
BstMBI	GATC	2 cut(s)	168, 199
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstNSI	RCATGY	1 cut(s)	65
BstSCI	CCNGG	2 cut(s)	381, 382
BstV1I	GCAGC	2 cut(s)	65, 341
BstXI	CCANNNNNNTGG	1 cut(s)	151
Bsu15I	ATCGAT	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	257
BsuTUI	ATCGAT	1 cut(s)	198
BtsCI	GGATG	2 cut(s)	277, 372
BtsIMutI	CAGTG	2 cut(s)	217, 399
Cac8I	GCNNGC	1 cut(s)	334
Cfr9I	CCCGGG	1 cut(s)	382
ClaI	ATCGAT	1 cut(s)	198
CviAII	CATG	2 cut(s)	62, 145
CviJI	RGCY	6 cut(s)	97, 228, 236, 257, 332, 419
CviKI_1	RGCY	6 cut(s)	97, 228, 236, 257, 332, 419
DpnI	GATC	2 cut(s)	170, 201
DpnII	GATC	2 cut(s)	168, 199
Eco57I	CTGAAG	1 cut(s)	311
Eco88I	CYCGRG	1 cut(s)	382
FaeI	CATG	2 cut(s)	65, 148
FaiI	YATR	5 cut(s)	26, 63, 77, 104, 146
FaqI	GGGAC	1 cut(s)	399
FatI	CATG	2 cut(s)	61, 144
FbaI	TGATCA	1 cut(s)	168
Fnu4HI	GCNGC	2 cut(s)	54, 330
FokI	GGATG	2 cut(s)	284, 359
Fsp4HI	GCNGC	2 cut(s)	54, 330
GluI	GCNGC	2 cut(s)	54, 330
GsuI	CTGGAG	1 cut(s)	423
HaeIII	GGCC	1 cut(s)	257
HapII	CCGG	1 cut(s)	383
Hin1II	CATG	2 cut(s)	65, 148
HpaII	CCGG	1 cut(s)	383
Hpy166II	GTNNAC	3 cut(s)	9, 346, 399
Hpy188I	TCNGA	2 cut(s)	159, 370
Hpy188III	TCNNGA	2 cut(s)	88, 376
Hpy8I	GTNNAC	3 cut(s)	9, 346, 399
HpyAV	CCTTC	2 cut(s)	268, 286
HpyCH4IV	ACGT	1 cut(s)	395
HpyCH4V	TGCA	4 cut(s)	53, 65, 131, 329
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpySE526I	ACGT	1 cut(s)	395
Hsp92II	CATG	2 cut(s)	65, 148
Ksp22I	TGATCA	1 cut(s)	168
Kzo9I	GATC	2 cut(s)	168, 199
LmnI	GCTCC	3 cut(s)	68, 404, 416
LpnPI	CCDG	9 cut(s)	51, 83, 210, 254, 302, 346, 387, 389, 396
Lsp1109I	GCAGC	2 cut(s)	65, 341
MaeII	ACGT	1 cut(s)	395
MalI	GATC	2 cut(s)	170, 201
MboI	GATC	2 cut(s)	168, 199
MboII	GAAGA	2 cut(s)	7, 331
MfeI	CAATTG	1 cut(s)	39
MluCI	AATT	4 cut(s)	39, 138, 189, 205
MseI	TTAA	2 cut(s)	192, 421
MslI	CAYNNNNRTG	1 cut(s)	149
MspI	CCGG	1 cut(s)	383
MspR9I	CCNGG	2 cut(s)	383, 384
MunI	CAATTG	1 cut(s)	39
MwoI	GCNNNNNNNGC	1 cut(s)	62
NciI	CCSGG	2 cut(s)	383, 384
NdeII	GATC	2 cut(s)	168, 199
NlaIII	CATG	2 cut(s)	65, 148
NlaIV	GGNNCC	1 cut(s)	156
NspI	RCATGY	1 cut(s)	65
PflMI	CCANNNNNTGG	1 cut(s)	44
PkrI	GCNGC	2 cut(s)	55, 331
PspN4I	GGNNCC	1 cut(s)	156
RseI	CAYNNNNRTG	1 cut(s)	149
SaqAI	TTAA	2 cut(s)	192, 421
SatI	GCNGC	2 cut(s)	54, 330
Sau3AI	GATC	2 cut(s)	168, 199
ScrFI	CCNGG	2 cut(s)	383, 384
SetI	ASST	4 cut(s)	99, 291, 398, 421
SmaI	CCCGGG	1 cut(s)	384
SmiMI	CAYNNNNRTG	1 cut(s)	149
Sse9I	AATT	4 cut(s)	39, 138, 189, 205
SsiI	CCGC	1 cut(s)	356
StyD4I	CCNGG	2 cut(s)	381, 382
TaiI	ACGT	1 cut(s)	398
TaqI	TCGA	1 cut(s)	198
TasI	AATT	4 cut(s)	39, 138, 189, 205
Tru1I	TTAA	2 cut(s)	192, 421
Tru9I	TTAA	2 cut(s)	192, 421
TscAI	CASTG	2 cut(s)	217, 406
TseI	GCWGC	2 cut(s)	53, 329
TspDTI	ATGAA	2 cut(s)	7, 350
TspMI	CCCGGG	1 cut(s)	382
TspRI	CASTG	2 cut(s)	217, 406
Van91I	CCANNNNNTGG	1 cut(s)	44
XceI	RCATGY	1 cut(s)	65
XmaI	CCCGGG	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.