Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

16707804 .. 16708208

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCTTCAAACCCCGACCAGCCATGGCTGCTAGAAAATGGCACCCTCAAGGGTTTAACCAAGGAGACCGGCCGGACCGGACGGACTGCGCACAACATGTCATCCTCTTCACTTCGGAAGAAGTCCGACCGCACACTTGTCTCCAAAGTTCCATGTGCCCTTCTCAGACAGTTTCTGGCGAATTTGCAAGAGGTTTTACTGGGGACTAAACTCGCTTTTTTATTCCCAGCCATCCCTCTTGCCATCGCTGCTCAGTGCTTTGGCTTTGCAAGAGGTGCTTTAGATTTTGGCCCTTACAATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006793 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006873 GO:0006874 GO:0006875 GO:0006882 GO:0007275 GO:0008150 GO:0008152 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0009705 GO:0009719 GO:0009725 GO:0009733 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0015075 GO:0015077 GO:0015078 GO:0015085 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015368 GO:0015369 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022622 GO:0022804 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030026 GO:0031090 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046916 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051139 GO:0051179 GO:0051234 GO:0051592 GO:0051704 GO:0051707 GO:0055062 GO:0055065 GO:0055069 GO:0055071 GO:0055074 GO:0055076 GO:0055080 GO:0055081 GO:0055082 GO:0055083 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0072503 GO:0072505 GO:0072506 GO:0072507 GO:0072511 GO:0098588 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098805 GO:0099402 GO:0099516 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_Ca_ex

Protein Analysis

102

Amino Acids

10.96

Weight (kDa)

9.92

Isoelectric Point (pI)

27.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	90
AccB1I	GGYRCC	1 cut(s)	41
AciI	CCGC	1 cut(s)	130
AcoI	YGGCCR	1 cut(s)	70
AcsI	RAATTY	1 cut(s)	181
AflIII	ACRYGT	1 cut(s)	96
AgsI	TTSAA	1 cut(s)	9
Alw26I	GTCTC	2 cut(s)	59, 145
AlwNI	CAGNNNCTG	1 cut(s)	175
AoxI	GGCC	2 cut(s)	70, 289
ApeKI	GCWGC	2 cut(s)	28, 248
ApoI	RAATTY	1 cut(s)	181
AspLEI	GCGC	1 cut(s)	91
AspS9I	GGNCC	2 cut(s)	75, 290
AvaII	GGWCC	1 cut(s)	75
BaeGI	GKGCMC	1 cut(s)	160
BanI	GGYRCC	1 cut(s)	41
BbvI	GCAGC	2 cut(s)	15, 235
BccI	CCATC	2 cut(s)	239, 251
BcoDI	GTCTC	2 cut(s)	59, 145
BfaI	CTAG	1 cut(s)	32
BisI	GCNGC	2 cut(s)	29, 249
BlsI	GCNGC	2 cut(s)	30, 250
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	2 cut(s)	75, 290
BmiI	GGNNCC	1 cut(s)	43
BmrI	ACTGGG	1 cut(s)	209
BmuI	ACTGGG	1 cut(s)	209
BpuEI	CTTGAG	1 cut(s)	32
BsaI	GGTCTC	1 cut(s)	59
BsaJI	CCNNGG	2 cut(s)	23, 60
BsaWI	WCCGGW	1 cut(s)	77
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	204
BseDI	CCNNGG	2 cut(s)	23, 60
BseGI	GGATG	2 cut(s)	101, 231
BseMII	CTCAG	2 cut(s)	178, 266
BseNI	ACTGG	1 cut(s)	204
BseSI	GKGCMC	1 cut(s)	160
BseX3I	CGGCCG	1 cut(s)	70
BseXI	GCAGC	2 cut(s)	15, 235
BseYI	CCCAGC	1 cut(s)	226
Bsh1285I	CGRYCG	2 cut(s)	73, 130
BshFI	GGCC	2 cut(s)	72, 291
BshNI	GGYRCC	1 cut(s)	41
BsiEI	CGRYCG	2 cut(s)	73, 130
BsiSI	CCGG	3 cut(s)	69, 73, 78
BslFI	GGGAC	1 cut(s)	217
BsmAI	GTCTC	2 cut(s)	59, 145
BsmFI	GGGAC	1 cut(s)	217
BsnI	GGCC	2 cut(s)	72, 291
Bso31I	GGTCTC	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp19I	CCATGG	1 cut(s)	23
BspACI	CCGC	1 cut(s)	130
BspANI	GGCC	2 cut(s)	72, 291
BspCNI	CTCAG	2 cut(s)	177, 265
BspLI	GGNNCC	1 cut(s)	43
BspT107I	GGYRCC	1 cut(s)	41
BspTNI	GGTCTC	1 cut(s)	59
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	204
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	2 cut(s)	23, 60
BssT1I	CCWWGG	2 cut(s)	23, 60
Bst4CI	ACNGT	1 cut(s)	171
Bst6I	CTCTTC	1 cut(s)	112
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstDEI	CTNAG	2 cut(s)	164, 252
BstDSI	CCRYGG	1 cut(s)	23
BstF5I	GGATG	2 cut(s)	101, 231
BstHHI	GCGC	1 cut(s)	91
BstMAI	GTCTC	2 cut(s)	59, 145
BstMCI	CGRYCG	2 cut(s)	73, 130
BstMWI	GCNNNNNNNGC	3 cut(s)	28, 248, 275
BstNSI	RCATGY	1 cut(s)	100
BstSLI	GKGCMC	1 cut(s)	160
BstV1I	GCAGC	2 cut(s)	15, 235
BstZI	CGGCCG	1 cut(s)	70
BsuRI	GGCC	2 cut(s)	72, 291
BtgI	CCRYGG	1 cut(s)	23
BtgZI	GCGATG	1 cut(s)	229
BtsCI	GGATG	2 cut(s)	101, 231
BtsIMutI	CAGTG	1 cut(s)	260
CaiI	CAGNNNCTG	1 cut(s)	175
CfoI	GCGC	1 cut(s)	91
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	2 cut(s)	75, 290
CpoI	CGGWCCG	1 cut(s)	75
CspI	CGGWCCG	1 cut(s)	75
CviAII	CATG	3 cut(s)	24, 97, 153
CviJI	RGCY	7 cut(s)	5, 22, 28, 72, 230, 264, 291
CviKI_1	RGCY	7 cut(s)	5, 22, 28, 72, 230, 264, 291
DdeI	CTNAG	2 cut(s)	164, 252
EaeI	YGGCCR	1 cut(s)	70
EagI	CGGCCG	1 cut(s)	70
Eam1104I	CTCTTC	1 cut(s)	112
EarI	CTCTTC	1 cut(s)	112
EclXI	CGGCCG	1 cut(s)	70
Eco130I	CCWWGG	2 cut(s)	23, 60
Eco31I	GGTCTC	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	75
Eco52I	CGGCCG	1 cut(s)	70
EcoT14I	CCWWGG	2 cut(s)	23, 60
ErhI	CCWWGG	2 cut(s)	23, 60
FaeI	CATG	3 cut(s)	27, 100, 156
FaiI	YATR	4 cut(s)	25, 98, 154, 304
FalI	AAGNNNNNCTT	2 cut(s)	262, 294
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	3 cut(s)	23, 96, 152
Fnu4HI	GCNGC	2 cut(s)	29, 249
FokI	GGATG	2 cut(s)	88, 218
Fsp4HI	GCNGC	2 cut(s)	29, 249
FspBI	CTAG	1 cut(s)	32
FspI	TGCGCA	1 cut(s)	90
GlaI	GCGC	1 cut(s)	90
GluI	GCNGC	2 cut(s)	29, 249
GsaI	CCCAGC	1 cut(s)	230
HaeIII	GGCC	2 cut(s)	72, 291
HapII	CCGG	3 cut(s)	69, 73, 78
HhaI	GCGC	1 cut(s)	91
Hin1II	CATG	3 cut(s)	27, 100, 156
Hin6I	GCGC	1 cut(s)	89
HinP1I	GCGC	1 cut(s)	89
HpaII	CCGG	3 cut(s)	69, 73, 78
Hpy188I	TCNGA	3 cut(s)	117, 127, 167
HpyAV	CCTTC	1 cut(s)	170
HpyCH4III	ACNGT	1 cut(s)	171
HpyCH4V	TGCA	2 cut(s)	187, 269
HpyF10VI	GCNNNNNNNGC	3 cut(s)	28, 248, 275
HpyF3I	CTNAG	2 cut(s)	164, 252
Hsp92II	CATG	3 cut(s)	27, 100, 156
HspAI	GCGC	1 cut(s)	89
LpnPI	CCDG	7 cut(s)	32, 82, 86, 91, 161, 185, 240
Lsp1109I	GCAGC	2 cut(s)	15, 235
MaeI	CTAG	1 cut(s)	32
MboII	GAAGA	2 cut(s)	99, 130
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	2 cut(s)	181, 298
MmeI	TCCRAC	1 cut(s)	150
MnlI	CCTC	5 cut(s)	56, 115, 184, 246, 266
MseI	TTAA	1 cut(s)	56
MspI	CCGG	3 cut(s)	69, 73, 78
MwoI	GCNNNNNNNGC	3 cut(s)	28, 248, 275
NcoI	CCATGG	1 cut(s)	23
NlaIII	CATG	3 cut(s)	27, 100, 156
NlaIV	GGNNCC	1 cut(s)	43
NsbI	TGCGCA	1 cut(s)	90
NspI	RCATGY	1 cut(s)	100
PciI	ACATGT	1 cut(s)	96
PkrI	GCNGC	2 cut(s)	30, 250
PscI	ACATGT	1 cut(s)	96
PspFI	CCCAGC	1 cut(s)	226
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	2 cut(s)	75, 290
PstNI	CAGNNNCTG	1 cut(s)	175
Rsr2I	CGGWCCG	1 cut(s)	75
RsrII	CGGWCCG	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	2 cut(s)	29, 249
Sau96I	GGNCC	2 cut(s)	75, 290
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	2 cut(s)	195, 277
SinI	GGWCC	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	47
SmoI	CTYRAG	1 cut(s)	47
Sse9I	AATT	2 cut(s)	181, 298
SsiI	CCGC	1 cut(s)	130
SspMI	CTAG	1 cut(s)	32
StyI	CCWWGG	2 cut(s)	23, 60
TaaI	ACNGT	1 cut(s)	171
TasI	AATT	2 cut(s)	181, 298
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TscAI	CASTG	1 cut(s)	260
TseI	GCWGC	2 cut(s)	28, 248
TspGWI	ACGGA	1 cut(s)	97
TspRI	CASTG	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	75
XapI	RAATTY	1 cut(s)	181
XceI	RCATGY	1 cut(s)	100
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.