pycom04g14440

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Forward (+)
17368155 .. 17368855
701 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 546 bp
ATGTCACCCTCTCTTCGACGTCAACAAGTCAAGGAAGCAACAAGTCTCGTAGAAACCTTCTCCACAAAGTTAAACCCACCATTAACTTACCATCACCAAAGCAATCTCATTTGTCCACAATATCAGAGTCTCGATCCAACTATACACATTAATGCATGCGAATTAGTAGCCAATGAACAATTTTCATTTGTGACAACTGCTGAAGATATTCCTAATACCCTAAGCCTAAGCTCTGTACTACGTTTTCTGTCCCATATCATTCCCTCACTCAGCTTCCATACATTTGTGGTCTCTAGGCAATGTCATCCCAGCGATCAACGATCATTGTTGTTGCAATTGAACAACAGCCTTGAATTTGACCCTATACAATCTAAAAAAATTGTGCAGTGGAATAATGGCTCAGATTACCGTTCTTGGGAAGGTGTCTCCTGCAAAGATGGTTGTGTTTCTCATCTTGACTTAAGCAGCGAGTCAATTTTAGGTGCACATATCAAGTGCTCTTTTCCATCTGCAGTACATCGAGGACCTAAATTTGGCTTACAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

182

Amino Acids

20.28

Weight (kDa)

6.74

Isoelectric Point (pI)

64.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 22
AclWI GGATC 1 cut(s) 128
AcsI RAATTY 2 cut(s) 353, 530
AcuI CTGAAG 1 cut(s) 222
AcyI GRCGYC 1 cut(s) 19
AfaI GTAC 2 cut(s) 237, 516
AfiI CCNNNNNNNGG 2 cut(s) 415, 533
AflII CTTAAG 1 cut(s) 460
AgsI TTSAA 2 cut(s) 340, 353
AluBI AGCT 2 cut(s) 231, 273
AluI AGCT 2 cut(s) 231, 273
Alw21I GWGCWC 2 cut(s) 487, 500
Alw26I GTCTC 4 cut(s) 50, 134, 295, 430
Alw44I GTGCAC 1 cut(s) 483
AlwI GGATC 1 cut(s) 128
ApaLI GTGCAC 1 cut(s) 483
ApeKI GCWGC 1 cut(s) 465
ApoI RAATTY 2 cut(s) 353, 530
AseI ATTAAT 1 cut(s) 150
Asp700I GAANNNNTTC 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 524
AsuHPI GGTGA 1 cut(s) 86
AvaII GGWCC 1 cut(s) 524
BaeGI GKGCMC 1 cut(s) 487
Bbv12I GWGCWC 2 cut(s) 487, 500
BbvI GCAGC 1 cut(s) 477
BccI CCATC 3 cut(s) 99, 431, 514
BcoDI GTCTC 4 cut(s) 50, 134, 295, 430
BfaI CTAG 1 cut(s) 294
BfmI CTRYAG 1 cut(s) 510
BfrI CTTAAG 1 cut(s) 460
BisI GCNGC 1 cut(s) 466
BlsI GCNGC 1 cut(s) 467
Bme18I GGWCC 1 cut(s) 524
BmgT120I GGNCC 1 cut(s) 524
Bpu10I CCTNAGC 2 cut(s) 221, 227
BsaHI GRCGYC 1 cut(s) 19
BsaI GGTCTC 1 cut(s) 295
Bsc4I CCNNNNNNNGG 2 cut(s) 415, 533
Bse3DI GCAATG 1 cut(s) 305
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 2 cut(s) 415, 533
BseMI GCAATG 1 cut(s) 305
BseMII CTCAG 2 cut(s) 283, 414
BseSI GKGCMC 1 cut(s) 487
BseXI GCAGC 1 cut(s) 477
BseYI CCCAGC 1 cut(s) 308
BsgI GTGCAG 1 cut(s) 404
BsiHKAI GWGCWC 2 cut(s) 487, 500
BslFI GGGAC 1 cut(s) 235
BslI CCNNNNNNNGG 2 cut(s) 415, 533
BsmAI GTCTC 4 cut(s) 50, 134, 295, 430
BsmFI GGGAC 1 cut(s) 235
Bso31I GGTCTC 1 cut(s) 295
Bsp1286I GDGCHC 2 cut(s) 487, 500
Bsp143I GATC 3 cut(s) 133, 313, 320
BspCNI CTCAG 2 cut(s) 282, 413
BspMAI CTGCAG 1 cut(s) 514
BspPI GGATC 1 cut(s) 128
BspTI CTTAAG 1 cut(s) 460
BspTNI GGTCTC 1 cut(s) 295
BsrDI GCAATG 1 cut(s) 305
BssMI GATC 3 cut(s) 133, 313, 320
BssNI GRCGYC 1 cut(s) 19
Bst4CI ACNGT 1 cut(s) 410
Bst6I CTCTTC 1 cut(s) 18
BstACI GRCGYC 1 cut(s) 19
BstAFI CTTAAG 1 cut(s) 460
BstC8I GCNNGC 1 cut(s) 157
BstDEI CTNAG 4 cut(s) 221, 227, 269, 400
BstF5I GGATG 1 cut(s) 304
BstKTI GATC 3 cut(s) 136, 316, 323
BstMAI GTCTC 4 cut(s) 50, 134, 295, 430
BstMBI GATC 3 cut(s) 133, 313, 320
BstNSI RCATGY 1 cut(s) 159
BstSFI CTRYAG 1 cut(s) 510
BstSLI GKGCMC 1 cut(s) 487
BstV1I GCAGC 1 cut(s) 477
BtsCI GGATG 1 cut(s) 304
BtsI GCAGTG 1 cut(s) 392
BtsIMutI CAGTG 1 cut(s) 392
Cac8I GCNNGC 1 cut(s) 157
Cfr13I GGNCC 1 cut(s) 524
Csp6I GTAC 2 cut(s) 236, 515
CviAII CATG 1 cut(s) 156
CviJI RGCY 7 cut(s) 170, 225, 231, 273, 348, 399, 537
CviKI_1 RGCY 7 cut(s) 170, 225, 231, 273, 348, 399, 537
CviQI GTAC 2 cut(s) 236, 515
DdeI CTNAG 4 cut(s) 221, 227, 269, 400
DpnI GATC 3 cut(s) 135, 315, 322
DpnII GATC 3 cut(s) 133, 313, 320
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Eco31I GGTCTC 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 524
Eco57I CTGAAG 1 cut(s) 222
EcoO109I RGGNCCY 1 cut(s) 524
EcoT22I ATGCAT 1 cut(s) 157
FaeI CATG 1 cut(s) 159
FaiI YATR 6 cut(s) 143, 157, 255, 279, 365, 489
FaqI GGGAC 1 cut(s) 235
FatI CATG 1 cut(s) 155
Fnu4HI GCNGC 1 cut(s) 466
FokI GGATG 1 cut(s) 291
Fsp4HI GCNGC 1 cut(s) 466
FspBI CTAG 1 cut(s) 294
GluI GCNGC 1 cut(s) 466
GsaI CCCAGC 1 cut(s) 312
Hin1I GRCGYC 1 cut(s) 19
Hin1II CATG 1 cut(s) 159
HincII GTYRAC 1 cut(s) 23
HindII GTYRAC 1 cut(s) 23
HinfI GANTC 2 cut(s) 127, 470
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 3 cut(s) 23, 116, 485
Hpy188I TCNGA 2 cut(s) 126, 403
Hpy188III TCNNGA 2 cut(s) 131, 455
Hpy8I GTNNAC 3 cut(s) 23, 116, 485
Hpy99I CGWCG 1 cut(s) 21
HpyAV CCTTC 2 cut(s) 67, 413
HpyCH4III ACNGT 1 cut(s) 410
HpyCH4IV ACGT 2 cut(s) 19, 241
HpyCH4V TGCA 6 cut(s) 155, 334, 385, 432, 485, 512
HpyF3I CTNAG 4 cut(s) 221, 227, 269, 400
HpySE526I ACGT 2 cut(s) 19, 241
Hsp92I GRCGYC 1 cut(s) 19
Hsp92II CATG 1 cut(s) 159
Kzo9I GATC 3 cut(s) 133, 313, 320
LpnPI CCDG 2 cut(s) 322, 442
Lsp1109I GCAGC 1 cut(s) 477
MaeI CTAG 1 cut(s) 294
MaeII ACGT 2 cut(s) 19, 241
MaeIII GTNAC 2 cut(s) 3, 190
MalI GATC 3 cut(s) 135, 315, 322
MboI GATC 3 cut(s) 133, 313, 320
MboII GAAGA 2 cut(s) 5, 215
MfeI CAATTG 1 cut(s) 335
MhlI GDGCHC 2 cut(s) 487, 500
MluCI AATT 7 cut(s) 161, 179, 335, 353, 378, 474, 530
MlyI GAGTC 2 cut(s) 136, 479
MmeI TCCRAC 1 cut(s) 161
MnlI CCTC 3 cut(s) 19, 274, 515
Mph1103I ATGCAT 1 cut(s) 157
MroXI GAANNNNTTC 1 cut(s) 207
MseI TTAA 4 cut(s) 71, 83, 150, 461
MslI CAYNNNNRTG 1 cut(s) 150
MspCI CTTAAG 1 cut(s) 460
MunI CAATTG 1 cut(s) 335
NdeII GATC 3 cut(s) 133, 313, 320
NlaIII CATG 1 cut(s) 159
NmuCI GTSAC 2 cut(s) 3, 190
NsiI ATGCAT 1 cut(s) 157
NspI RCATGY 1 cut(s) 159
PaeI GCATGC 1 cut(s) 159
PdmI GAANNNNTTC 1 cut(s) 207
PkrI GCNGC 1 cut(s) 467
PleI GAGTC 2 cut(s) 135, 478
PpsI GAGTC 2 cut(s) 135, 478
PpuMI RGGWCCY 1 cut(s) 524
PshBI ATTAAT 1 cut(s) 150
Psp5II RGGWCCY 1 cut(s) 524
PspFI CCCAGC 1 cut(s) 308
PspPI GGNCC 1 cut(s) 524
PspPPI RGGWCCY 1 cut(s) 524
PstI CTGCAG 1 cut(s) 514
RsaI GTAC 2 cut(s) 237, 516
RsaNI GTAC 2 cut(s) 236, 515
RseI CAYNNNNRTG 1 cut(s) 150
SaqAI TTAA 4 cut(s) 71, 83, 150, 461
SatI GCNGC 1 cut(s) 466
Sau3AI GATC 3 cut(s) 133, 313, 320
Sau96I GGNCC 1 cut(s) 524
SchI GAGTC 2 cut(s) 136, 479
SduI GDGCHC 2 cut(s) 487, 500
SetI ASST 8 cut(s) 22, 59, 233, 244, 275, 424, 484, 529
SfcI CTRYAG 1 cut(s) 510
SinI GGWCC 1 cut(s) 524
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 460
SmoI CTYRAG 1 cut(s) 460
SphI GCATGC 1 cut(s) 159
Sse9I AATT 7 cut(s) 161, 179, 335, 353, 378, 474, 530
SspMI CTAG 1 cut(s) 294
TaaI ACNGT 1 cut(s) 410
TaiI ACGT 2 cut(s) 22, 244
TaqI TCGA 3 cut(s) 16, 132, 520
TasI AATT 7 cut(s) 161, 179, 335, 353, 378, 474, 530
TatI WGTACW 2 cut(s) 235, 514
Tru1I TTAA 4 cut(s) 71, 83, 150, 461
Tru9I TTAA 4 cut(s) 71, 83, 150, 461
TscAI CASTG 1 cut(s) 392
TseFI GTSAC 2 cut(s) 3, 190
TseI GCWGC 1 cut(s) 465
Tsp45I GTSAC 2 cut(s) 3, 190
TspDTI ATGAA 2 cut(s) 174, 189
TspRI CASTG 1 cut(s) 392
Vha464I CTTAAG 1 cut(s) 460
VneI GTGCAC 1 cut(s) 483
VpaK11BI GGWCC 1 cut(s) 524
VspI ATTAAT 1 cut(s) 150
XapI RAATTY 2 cut(s) 353, 530
XceI RCATGY 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 207
XspI CTAG 1 cut(s) 294
ZraI GACGTC 1 cut(s) 20
Zsp2I ATGCAT 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.