Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

17501015 .. 17502419

Gene Structure 1405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGACCGGCCGTACAGGGATGAGGATAAGAAGCTGTGGCAGGCGGTGCCGCGTGTTATCAGGCCGGACGGGGGCCGGCCCTATCGGGTACAAGCAGCTCGAAAAGCAGTATTATGATTTTAGACTTGCGGCTGGTGCAACTGCTTTGATTCACAAACTACAAAAAGGAATTCCTCCCTGGGTTCCACTCAAGGGACACGAGAAGAAAACTTATAAGCAGCTACAAGAGGACGCTGTTGAAAGCAAGAGACGTGACTTAGCAGTACTTGAAGCTAACGATGGTGTTTGGCCTCGAATTCCGAGTCATGCTCTATTTCTTGGCTCTGAACTGACAACAATTTTAGAAGAGGATCACATGCCGAACAAATACATTCCAAAAGCTCTTAGGGTCGAGTTGTCTAAAATTATCCTGGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4339

Protein Analysis

139

Amino Acids

15.55

Weight (kDa)

9.86

Isoelectric Point (pI)

52.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	213
AccB1I	GGYRCC	1 cut(s)	45
AccII	CGCG	1 cut(s)	51
AciI	CCGC	3 cut(s)	43, 49, 128
AclWI	GGATC	1 cut(s)	357
AcoI	YGGCCR	1 cut(s)	7
AcsI	RAATTY	2 cut(s)	168, 294
AfaI	GTAC	3 cut(s)	13, 89, 264
AfiI	CCNNNNNNNGG	2 cut(s)	70, 191
AgsI	TTSAA	2 cut(s)	239, 269
AjiI	CACGTC	1 cut(s)	251
AjnI	CCWGG	2 cut(s)	176, 408
AluBI	AGCT	5 cut(s)	33, 97, 220, 272, 380
AluI	AGCT	5 cut(s)	33, 97, 220, 272, 380
Alw26I	GTCTC	1 cut(s)	241
AlwI	GGATC	1 cut(s)	357
AoxI	GGCC	5 cut(s)	7, 61, 72, 76, 287
ApeKI	GCWGC	2 cut(s)	94, 217
ApoI	RAATTY	2 cut(s)	168, 294
ArsI	GACNNNNNNTTYG	2 cut(s)	286, 318
AspS9I	GGNCC	2 cut(s)	72, 77
BanI	GGYRCC	1 cut(s)	45
BauI	CACGAG	1 cut(s)	197
BbvI	GCAGC	2 cut(s)	106, 229
BccI	CCATC	1 cut(s)	272
BciT130I	CCWGG	2 cut(s)	178, 410
BcoDI	GTCTC	1 cut(s)	241
BisI	GCNGC	4 cut(s)	49, 95, 129, 218
BlsI	GCNGC	4 cut(s)	50, 96, 130, 219
BmcAI	AGTACT	1 cut(s)	264
Bme1390I	CCNGG	2 cut(s)	178, 410
BmgBI	CACGTC	1 cut(s)	251
BmgT120I	GGNCC	2 cut(s)	72, 77
BmiI	GGNNCC	3 cut(s)	47, 73, 183
BmrFI	CCNGG	2 cut(s)	178, 410
BplI	GAGNNNNNCTC	2 cut(s)	292, 324
BpuEI	CTTGAG	1 cut(s)	173
BsaJI	CCNNGG	3 cut(s)	176, 177, 409
Bsc4I	CCNNNNNNNGG	2 cut(s)	70, 191
Bse118I	RCCGGY	2 cut(s)	5, 74
BseBI	CCWGG	2 cut(s)	178, 410
BseDI	CCNNGG	3 cut(s)	176, 177, 409
BseGI	GGATG	1 cut(s)	24
BseLI	CCNNNNNNNGG	2 cut(s)	70, 191
BseX3I	CGGCCG	1 cut(s)	7
BseXI	GCAGC	2 cut(s)	106, 229
Bsh1236I	CGCG	1 cut(s)	51
Bsh1285I	CGRYCG	1 cut(s)	10
BshFI	GGCC	5 cut(s)	9, 63, 74, 78, 289
BshNI	GGYRCC	1 cut(s)	45
BsiEI	CGRYCG	1 cut(s)	10
BsiSI	CCGG	3 cut(s)	6, 64, 75
BslFI	GGGAC	1 cut(s)	207
BslI	CCNNNNNNNGG	2 cut(s)	70, 191
BsmAI	GTCTC	1 cut(s)	241
BsmBI	CGTCTC	1 cut(s)	241
BsmFI	GGGAC	1 cut(s)	207
BsnI	GGCC	5 cut(s)	9, 63, 74, 78, 289
Bsp143I	GATC	1 cut(s)	349
BspACI	CCGC	3 cut(s)	43, 49, 128
BspANI	GGCC	5 cut(s)	9, 63, 74, 78, 289
BspFNI	CGCG	1 cut(s)	51
BspLI	GGNNCC	3 cut(s)	47, 73, 183
BspPI	GGATC	1 cut(s)	357
BspT107I	GGYRCC	1 cut(s)	45
BsrFI	RCCGGY	2 cut(s)	5, 74
BssAI	RCCGGY	2 cut(s)	5, 74
BssECI	CCNNGG	3 cut(s)	176, 177, 409
BssMI	GATC	1 cut(s)	349
BssSI	CACGAG	1 cut(s)	197
Bst2BI	CACGAG	1 cut(s)	197
Bst2UI	CCWGG	2 cut(s)	178, 410
Bst6I	CTCTTC	1 cut(s)	339
BstAPI	GCANNNNNTGC	1 cut(s)	45
BstC8I	GCNNGC	2 cut(s)	41, 76
BstDEI	CTNAG	2 cut(s)	256, 383
BstF5I	GGATG	1 cut(s)	24
BstFNI	CGCG	1 cut(s)	51
BstKTI	GATC	1 cut(s)	352
BstMAI	GTCTC	1 cut(s)	241
BstMBI	GATC	1 cut(s)	349
BstMCI	CGRYCG	1 cut(s)	10
BstMWI	GCNNNNNNNGC	3 cut(s)	45, 103, 134
BstNI	CCWGG	2 cut(s)	178, 410
BstNSI	RCATGY	1 cut(s)	358
BstSCI	CCNGG	2 cut(s)	176, 408
BstUI	CGCG	1 cut(s)	51
BstV1I	GCAGC	2 cut(s)	106, 229
BstZI	CGGCCG	1 cut(s)	7
BsuRI	GGCC	5 cut(s)	9, 63, 74, 78, 289
BtrI	CACGTC	1 cut(s)	251
BtsCI	GGATG	1 cut(s)	24
Cac8I	GCNNGC	2 cut(s)	41, 76
Cfr10I	RCCGGY	2 cut(s)	5, 74
Cfr13I	GGNCC	2 cut(s)	72, 77
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	3 cut(s)	12, 88, 263
CviAII	CATG	2 cut(s)	305, 355
CviQI	GTAC	3 cut(s)	12, 88, 263
DdeI	CTNAG	2 cut(s)	256, 383
DpnI	GATC	1 cut(s)	351
DpnII	GATC	1 cut(s)	349
EaeI	YGGCCR	1 cut(s)	7
EagI	CGGCCG	1 cut(s)	7
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
EclXI	CGGCCG	1 cut(s)	7
Eco52I	CGGCCG	1 cut(s)	7
EcoRI	GAATTC	2 cut(s)	168, 294
EcoRII	CCWGG	2 cut(s)	176, 408
Esp3I	CGTCTC	1 cut(s)	241
FaeI	CATG	2 cut(s)	308, 358
FaiI	YATR	4 cut(s)	114, 213, 306, 356
FaqI	GGGAC	1 cut(s)	207
FatI	CATG	2 cut(s)	304, 354
Fnu4HI	GCNGC	4 cut(s)	49, 95, 129, 218
FokI	GGATG	1 cut(s)	31
FseI	GGCCGGCC	1 cut(s)	78
Fsp4HI	GCNGC	4 cut(s)	49, 95, 129, 218
GluI	GCNGC	4 cut(s)	49, 95, 129, 218
HaeIII	GGCC	5 cut(s)	9, 63, 74, 78, 289
HapII	CCGG	3 cut(s)	6, 64, 75
HgaI	GACGC	1 cut(s)	239
Hin1II	CATG	2 cut(s)	308, 358
HinfI	GANTC	2 cut(s)	148, 301
HpaII	CCGG	3 cut(s)	6, 64, 75
Hpy188I	TCNGA	2 cut(s)	300, 325
HpyCH4IV	ACGT	1 cut(s)	250
HpyCH4V	TGCA	1 cut(s)	137
HpyF10VI	GCNNNNNNNGC	3 cut(s)	45, 103, 134
HpyF3I	CTNAG	2 cut(s)	256, 383
HpySE526I	ACGT	1 cut(s)	250
Hsp92II	CATG	2 cut(s)	308, 358
KroI	GCCGGC	1 cut(s)	74
KroNI	GCCGGC	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	349
LpnPI	CCDG	9 cut(s)	19, 25, 45, 77, 88, 117, 163, 190, 395
Lsp1109I	GCAGC	2 cut(s)	106, 229
MaeII	ACGT	1 cut(s)	250
MaeIII	GTNAC	1 cut(s)	251
MalI	GATC	1 cut(s)	351
MboI	GATC	1 cut(s)	349
MboII	GAAGA	2 cut(s)	214, 356
MluCI	AATT	4 cut(s)	168, 294, 336, 402
MlyI	GAGTC	1 cut(s)	310
MnlI	CCTC	5 cut(s)	15, 183, 220, 300, 340
MroNI	GCCGGC	1 cut(s)	74
MseI	TTAA	1 cut(s)	415
MspI	CCGG	3 cut(s)	6, 64, 75
MspR9I	CCNGG	2 cut(s)	178, 410
MvaI	CCWGG	2 cut(s)	178, 410
MvnI	CGCG	1 cut(s)	51
MwoI	GCNNNNNNNGC	3 cut(s)	45, 103, 134
NaeI	GCCGGC	1 cut(s)	76
NdeII	GATC	1 cut(s)	349
NgoMIV	GCCGGC	1 cut(s)	74
NlaIII	CATG	2 cut(s)	308, 358
NlaIV	GGNNCC	3 cut(s)	47, 73, 183
NmuCI	GTSAC	1 cut(s)	251
NspI	RCATGY	1 cut(s)	358
PasI	CCCWGGG	1 cut(s)	177
PdiI	GCCGGC	1 cut(s)	76
PfeI	GAWTC	1 cut(s)	148
PkrI	GCNGC	4 cut(s)	50, 96, 130, 219
PleI	GAGTC	1 cut(s)	309
PpsI	GAGTC	1 cut(s)	309
PsiI	TTATAA	1 cut(s)	213
Psp6I	CCWGG	2 cut(s)	176, 408
PspGI	CCWGG	2 cut(s)	176, 408
PspN4I	GGNNCC	3 cut(s)	47, 73, 183
PspPI	GGNCC	2 cut(s)	72, 77
RigI	GGCCGGCC	1 cut(s)	78
RsaI	GTAC	3 cut(s)	13, 89, 264
RsaNI	GTAC	3 cut(s)	12, 88, 263
SaqAI	TTAA	1 cut(s)	415
SatI	GCNGC	4 cut(s)	49, 95, 129, 218
Sau3AI	GATC	1 cut(s)	349
Sau96I	GGNCC	2 cut(s)	72, 77
ScaI	AGTACT	1 cut(s)	264
SchI	GAGTC	1 cut(s)	310
ScrFI	CCNGG	2 cut(s)	178, 410
SetI	ASST	6 cut(s)	35, 99, 222, 253, 274, 382
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	4 cut(s)	168, 294, 336, 402
SsiI	CCGC	3 cut(s)	43, 49, 128
StyD4I	CCNGG	2 cut(s)	176, 408
TaiI	ACGT	1 cut(s)	253
TaqI	TCGA	3 cut(s)	99, 292, 390
TasI	AATT	4 cut(s)	168, 294, 336, 402
TatI	WGTACW	1 cut(s)	262
TauI	GCSGC	2 cut(s)	51, 131
TfiI	GAWTC	1 cut(s)	148
Tru1I	TTAA	1 cut(s)	415
Tru9I	TTAA	1 cut(s)	415
TseFI	GTSAC	1 cut(s)	251
TseI	GCWGC	2 cut(s)	94, 217
Tsp45I	GTSAC	1 cut(s)	251
XapI	RAATTY	2 cut(s)	168, 294
XceI	RCATGY	1 cut(s)	358
ZrmI	AGTACT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.