pycom04g15170

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Reverse (-)
18024098 .. 18026405
2308 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1035 bp
ATGGCTTTCGTCTTAATTTTCTTTATTTCATTCTTCTCAATTACTAATGCTTCCGACAACACCTCTAACCCCTATTCTTCAAAGTGTCCTGACATGATGACTATCATCGAGCGTCATGTCCACACTGTTGTCGTAGACGAGCCACGCATGGCAGCCTCGCTTCTCAACCTCTTCTTTCACGACTGTTTTGTGAACGGTTGCGATGCCTCCATTCTTCTGGACGATACGGCAGAAGTGATAGGAGAGAAGTCCGCTCCGCTAAACTTGAGATCCCTTCGTGGGTTCGAGGTGGTGGACGACATAAAGGCAGCATTGGAGGTGGCGTGTCCTGCAACCGTGTCTTGTGCAGACATCCTAGCGGTGGCCGCCAGAGATTCTGTAGTTGCGTGGAATGGCCCTACATGGGACGTCCAATTGGGCCGGAGGGACTCCACCAAGGCCAATTTCTCAGATGTTGGCGTTAATATCCCGTCCCCCAACTTCAATCTTTCTGAATTGATCTCTGCATTTGAGCTAAAAGGGTTCAATTCCAGAGAGATGGTGGCCTTATCAGGGGCACACACCATTGGAGCAGCACACTGCGCCTCCTTTTACCACCGCATCTACAATGACAAGGATTTAGATGTGTCCCTTGGTGAGAAGCTAAAGGTGGTCTGTCCAAAGGAGGAATGGCTCAGCAATGTCACCAGTGTGACCCAGCCACTCGACATCACAACTGATACCCGATTTGACTTCGCCTACTTCAAAAATTTGGAGATGGAAATGGGCCTTCTCCATTCTGATCAGCAACTAATGAACGGTAGCCTGACTTCATCTTATGTCAGAGCGTACATAGCATATCCCGATACATTCCATTCGGACTTTGCCCAAGCAATGCAAAAAATGGGAAGTCTGGGCATACTCACAGGCCAAGACGGAGAGATAAGATCAGTGTGCAGGAAAGTCAATATTCGATGTCGGGCCGCTAGTGGTGCGATCCACAATATTTTTACTAGTATGGTGTGTCTCCTAGTGCTAGCTATATTTTTGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

345

Amino Acids

37.89

Weight (kDa)

5.16

Isoelectric Point (pI)

29.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 38 - 278 4.7e-78 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 411
AccBSI CCGCTC 1 cut(s) 254
AccI GTMKAC 1 cut(s) 135
AciI CCGC 6 cut(s) 252, 257, 359, 366, 598, 963
AclWI GGATC 2 cut(s) 264, 970
AcoI YGGCCR 1 cut(s) 363
AcsI RAATTY 1 cut(s) 748
AcyI GRCGYC 1 cut(s) 408
AfaI GTAC 1 cut(s) 830
AfiI CCNNNNNNNGG 4 cut(s) 279, 361, 403, 552
AgsI TTSAA 4 cut(s) 81, 484, 526, 745
AhlI ACTAGT 1 cut(s) 992
AjuI GAANNNNNNNTTGG 2 cut(s) 428, 460
AleI CACNNNNGTG 1 cut(s) 689
AluBI AGCT 3 cut(s) 514, 643, 1019
AluI AGCT 3 cut(s) 514, 643, 1019
Alw26I GTCTC 1 cut(s) 1010
AlwI GGATC 2 cut(s) 264, 970
AoxI GGCC 8 cut(s) 363, 394, 418, 438, 543, 766, 907, 960
ApeKI GCWGC 3 cut(s) 152, 308, 572
ApoI RAATTY 1 cut(s) 748
AspLEI GCGC 1 cut(s) 584
AspS9I GGNCC 4 cut(s) 395, 418, 766, 960
AsuHPI GGTGA 2 cut(s) 647, 676
AsuNHI GCTAGC 1 cut(s) 1015
BaeGI GKGCMC 1 cut(s) 559
BarI GAAGNNNNNNTAC 2 cut(s) 793, 825
BbvI GCAGC 3 cut(s) 164, 320, 584
BccI CCATC 2 cut(s) 532, 751
BceAI ACGGC 1 cut(s) 243
BclI TGATCA 1 cut(s) 781
BcoDI GTCTC 1 cut(s) 1010
BcuI ACTAGT 1 cut(s) 992
BfaI CTAG 5 cut(s) 356, 966, 993, 1010, 1016
BfmI CTRYAG 1 cut(s) 378
BisI GCNGC 5 cut(s) 153, 309, 366, 573, 963
BlpI GCTNAGC 1 cut(s) 674
BlsI GCNGC 5 cut(s) 154, 310, 367, 574, 964
BmgT120I GGNCC 4 cut(s) 395, 418, 766, 960
BmsI GCATC 2 cut(s) 193, 609
BmtI GCTAGC 1 cut(s) 1019
Bpu1102I GCTNAGC 1 cut(s) 674
BpuEI CTTGAG 1 cut(s) 286
BsaBI GATNNNNATC 1 cut(s) 101
BsaHI GRCGYC 1 cut(s) 408
BsaJI CCNNGG 2 cut(s) 435, 631
BsaXI ACNNNNNCTCC 4 cut(s) 308, 338, 569, 599
Bsc4I CCNNNNNNNGG 4 cut(s) 279, 361, 403, 552
Bse1I ACTGG 1 cut(s) 687
Bse3DI GCAATG 2 cut(s) 685, 879
Bse8I GATNNNNATC 1 cut(s) 101
BseDI CCNNGG 2 cut(s) 435, 631
BseGI GGATG 1 cut(s) 351
BseJI GATNNNNATC 1 cut(s) 101
BseLI CCNNNNNNNGG 4 cut(s) 279, 361, 403, 552
BseMI GCAATG 2 cut(s) 685, 879
BseMII CTCAG 2 cut(s) 462, 688
BseNI ACTGG 1 cut(s) 687
BseSI GKGCMC 1 cut(s) 559
BseXI GCAGC 3 cut(s) 164, 320, 584
BseYI CCCAGC 1 cut(s) 696
BsgI GTGCAG 2 cut(s) 366, 955
BshFI GGCC 8 cut(s) 365, 396, 420, 440, 545, 768, 909, 962
BsiSI CCGG 1 cut(s) 421
BslFI GGGAC 4 cut(s) 419, 440, 457, 613
BslI CCNNNNNNNGG 4 cut(s) 279, 361, 403, 552
BsmAI GTCTC 1 cut(s) 1010
BsmFI GGGAC 4 cut(s) 419, 440, 457, 613
BsnI GGCC 8 cut(s) 365, 396, 420, 440, 545, 768, 909, 962
Bsp1286I GDGCHC 1 cut(s) 559
Bsp143I GATC 5 cut(s) 269, 498, 781, 926, 975
Bsp1720I GCTNAGC 1 cut(s) 674
BspACI CCGC 6 cut(s) 252, 257, 359, 366, 598, 963
BspANI GGCC 8 cut(s) 365, 396, 420, 440, 545, 768, 909, 962
BspCNI CTCAG 2 cut(s) 461, 687
BspOI GCTAGC 1 cut(s) 1019
BspPI GGATC 2 cut(s) 264, 970
BsrBI CCGCTC 1 cut(s) 254
BsrDI GCAATG 2 cut(s) 685, 879
BsrI ACTGG 1 cut(s) 687
BssECI CCNNGG 2 cut(s) 435, 631
BssMI GATC 5 cut(s) 269, 498, 781, 926, 975
BssNI GRCGYC 1 cut(s) 408
BssT1I CCWWGG 2 cut(s) 435, 631
Bst4CI ACNGT 5 cut(s) 127, 185, 197, 337, 800
Bst6I CTCTTC 1 cut(s) 176
BstACI GRCGYC 1 cut(s) 408
BstC8I GCNNGC 1 cut(s) 1017
BstDEI CTNAG 2 cut(s) 448, 674
BstF5I GGATG 1 cut(s) 351
BstHHI GCGC 1 cut(s) 584
BstKTI GATC 5 cut(s) 272, 501, 784, 929, 978
BstMAI GTCTC 1 cut(s) 1010
BstMBI GATC 5 cut(s) 269, 498, 781, 926, 975
BstMWI GCNNNNNNNGC 5 cut(s) 329, 365, 581, 833, 971
BstSFI CTRYAG 1 cut(s) 378
BstSLI GKGCMC 1 cut(s) 559
BstV1I GCAGC 3 cut(s) 164, 320, 584
BstX2I RGATCY 1 cut(s) 269
BstXI CCANNNNNNTGG 2 cut(s) 217, 538
BstYI RGATCY 1 cut(s) 269
BsuRI GGCC 8 cut(s) 365, 396, 420, 440, 545, 768, 909, 962
BtgZI GCGATG 1 cut(s) 216
BtsCI GGATG 1 cut(s) 351
BtsI GCAGTG 1 cut(s) 577
BtsIMutI CAGTG 4 cut(s) 123, 577, 694, 936
Cac8I GCNNGC 1 cut(s) 1017
CfoI GCGC 1 cut(s) 584
Cfr13I GGNCC 4 cut(s) 395, 418, 766, 960
CseI GACGC 1 cut(s) 101
Csp6I GTAC 1 cut(s) 829
CviAII CATG 4 cut(s) 94, 116, 148, 402
CviQI GTAC 1 cut(s) 829
DdeI CTNAG 2 cut(s) 448, 674
DpnI GATC 5 cut(s) 271, 500, 783, 928, 977
DpnII GATC 5 cut(s) 269, 498, 781, 926, 975
EaeI YGGCCR 1 cut(s) 363
Eam1104I CTCTTC 1 cut(s) 176
EarI CTCTTC 1 cut(s) 176
Eco130I CCWWGG 2 cut(s) 435, 631
EcoT14I CCWWGG 2 cut(s) 435, 631
ErhI CCWWGG 2 cut(s) 435, 631
FaeI CATG 4 cut(s) 97, 119, 151, 405
FaqI GGGAC 4 cut(s) 419, 440, 457, 613
FatI CATG 4 cut(s) 93, 115, 147, 401
FbaI TGATCA 1 cut(s) 781
FblI GTMKAC 1 cut(s) 135
Fnu4HI GCNGC 5 cut(s) 153, 309, 366, 573, 963
FokI GGATG 1 cut(s) 338
Fsp4HI GCNGC 5 cut(s) 153, 309, 366, 573, 963
FspBI CTAG 5 cut(s) 356, 966, 993, 1010, 1016
GlaI GCGC 1 cut(s) 583
GluI GCNGC 5 cut(s) 153, 309, 366, 573, 963
GsaI CCCAGC 1 cut(s) 700
HaeIII GGCC 8 cut(s) 365, 396, 420, 440, 545, 768, 909, 962
HapII CCGG 1 cut(s) 421
HgaI GACGC 1 cut(s) 101
HhaI GCGC 1 cut(s) 584
Hin1I GRCGYC 1 cut(s) 408
Hin1II CATG 4 cut(s) 97, 119, 151, 405
Hin6I GCGC 1 cut(s) 582
HinP1I GCGC 1 cut(s) 582
HinfI GANTC 2 cut(s) 374, 428
HpaII CCGG 1 cut(s) 421
HphI GGTGA 2 cut(s) 647, 676
Hpy166II GTNNAC 4 cut(s) 121, 136, 193, 295
Hpy188I TCNGA 6 cut(s) 55, 451, 493, 781, 824, 859
Hpy188III TCNNGA 5 cut(s) 89, 179, 218, 531, 842
Hpy8I GTNNAC 4 cut(s) 121, 136, 193, 295
HpyAV CCTTC 2 cut(s) 284, 779
HpyCH4III ACNGT 5 cut(s) 127, 185, 197, 337, 800
HpyCH4IV ACGT 1 cut(s) 408
HpyCH4V TGCA 5 cut(s) 332, 347, 506, 877, 936
HpyF10VI GCNNNNNNNGC 5 cut(s) 329, 365, 581, 833, 971
HpyF3I CTNAG 2 cut(s) 448, 674
HpySE526I ACGT 1 cut(s) 408
Hsp92I GRCGYC 1 cut(s) 408
Hsp92II CATG 4 cut(s) 97, 119, 151, 405
HspAI GCGC 1 cut(s) 582
Ksp22I TGATCA 1 cut(s) 781
Kzo9I GATC 5 cut(s) 269, 498, 781, 926, 975
LmnI GCTCC 2 cut(s) 259, 569
Lsp1109I GCAGC 3 cut(s) 164, 320, 584
LweI GCATC 2 cut(s) 193, 609
MaeI CTAG 5 cut(s) 356, 966, 993, 1010, 1016
MaeII ACGT 1 cut(s) 408
MaeIII GTNAC 2 cut(s) 682, 691
MalI GATC 5 cut(s) 271, 500, 783, 928, 977
MbiI CCGCTC 1 cut(s) 254
MboI GATC 5 cut(s) 269, 498, 781, 926, 975
MboII GAAGA 4 cut(s) 25, 69, 163, 206
MfeI CAATTG 1 cut(s) 413
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 1 cut(s) 559
MluCI AATT 7 cut(s) 15, 39, 413, 442, 494, 526, 748
MlyI GAGTC 1 cut(s) 422
MmeI TCCRAC 1 cut(s) 78
MnlI CCTC 9 cut(s) 73, 166, 179, 217, 280, 310, 417, 595, 658
MseI TTAA 2 cut(s) 14, 462
MslI CAYNNNNRTG 1 cut(s) 689
MspI CCGG 1 cut(s) 421
MunI CAATTG 1 cut(s) 413
MwoI GCNNNNNNNGC 5 cut(s) 329, 365, 581, 833, 971
NdeII GATC 5 cut(s) 269, 498, 781, 926, 975
NheI GCTAGC 1 cut(s) 1015
NlaIII CATG 4 cut(s) 97, 119, 151, 405
NmuCI GTSAC 2 cut(s) 682, 691
OliI CACNNNNGTG 1 cut(s) 689
PfeI GAWTC 1 cut(s) 374
PkrI GCNGC 5 cut(s) 154, 310, 367, 574, 964
PleI GAGTC 1 cut(s) 422
PpsI GAGTC 1 cut(s) 422
PspFI CCCAGC 1 cut(s) 696
PspPI GGNCC 4 cut(s) 395, 418, 766, 960
PsuI RGATCY 1 cut(s) 269
RsaI GTAC 1 cut(s) 830
RsaNI GTAC 1 cut(s) 829
RseI CAYNNNNRTG 1 cut(s) 689
SaqAI TTAA 2 cut(s) 14, 462
SatI GCNGC 5 cut(s) 153, 309, 366, 573, 963
Sau3AI GATC 5 cut(s) 269, 498, 781, 926, 975
Sau96I GGNCC 4 cut(s) 395, 418, 766, 960
SchI GAGTC 1 cut(s) 422
SduI GDGCHC 1 cut(s) 559
SetI ASST 9 cut(s) 65, 171, 291, 321, 411, 516, 645, 651, 1021
SfaNI GCATC 2 cut(s) 193, 609
SfcI CTRYAG 1 cut(s) 378
SmiMI CAYNNNNRTG 1 cut(s) 689
SmlI CTYRAG 1 cut(s) 265
SmoI CTYRAG 1 cut(s) 265
SpeI ACTAGT 1 cut(s) 992
Sse9I AATT 7 cut(s) 15, 39, 413, 442, 494, 526, 748
SsiI CCGC 6 cut(s) 252, 257, 359, 366, 598, 963
SspI AATATT 2 cut(s) 949, 985
SspMI CTAG 5 cut(s) 356, 966, 993, 1010, 1016
StyI CCWWGG 2 cut(s) 435, 631
TaaI ACNGT 5 cut(s) 127, 185, 197, 337, 800
TaiI ACGT 1 cut(s) 411
TaqI TCGA 4 cut(s) 108, 285, 705, 952
TasI AATT 7 cut(s) 15, 39, 413, 442, 494, 526, 748
TauI GCSGC 2 cut(s) 368, 965
TfiI GAWTC 1 cut(s) 374
Tru1I TTAA 2 cut(s) 14, 462
Tru9I TTAA 2 cut(s) 14, 462
TscAI CASTG 4 cut(s) 130, 584, 694, 936
TseFI GTSAC 2 cut(s) 682, 691
TseI GCWGC 3 cut(s) 152, 308, 572
Tsp45I GTSAC 2 cut(s) 682, 691
TspDTI ATGAA 3 cut(s) 18, 801, 809
TspGWI ACGGA 1 cut(s) 930
TspRI CASTG 4 cut(s) 130, 584, 694, 936
XapI RAATTY 1 cut(s) 748
XcmI CCANNNNNNNNNTGG 2 cut(s) 538, 666
XmiI GTMKAC 1 cut(s) 135
XspI CTAG 5 cut(s) 356, 966, 993, 1010, 1016
ZraI GACGTC 1 cut(s) 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.