pycom04g16270

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Forward (+)
18990839 .. 18992381
1543 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 486 bp
ATGAAGCAGATTAACTACGCCATTGACAATATTAATACAACCATGATATTCTGCCCAATGGGTTGCTTTCTCTTCCCAAATTTCAGCTGGGAACCGCCAGATATCCATGAATATTTTAATTGGAAGGGGAAGTGGGAGATGGTGATCGTTGCTATTTATGGCTGTCATCAACTAACTCCATTTACCCATTTGGAAAGACTGATTTGTGTGAGAATGTCTTCTTCAAGACCTAGCAACTCGTCCAGCAATTCAGGGCGGTCTAGACACAGTGCTAGAGTTATCGCTCAGACAACTGTTGATGCAAAGCTGCATGCAGATTATGAGGAGTCAGGTAGTTCCTTTGACTACTCGAGCTCAGTGCGCGCTGGCAGTTCAGTTGGCGGGGATCAACAACCTAGGTCTGACAAAGTGACCACTGCTTATCTCCATCACATACAGAAGGGCAAGATCGATCCAACCGTTTGGATGCTTGCTAGCCTTAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009639 GO:0009640 GO:0009642 GO:0009791 GO:0009881 GO:0009883 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010018 GO:0010114 GO:0010161 GO:0010201 GO:0010203 GO:0010218 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016301 GO:0016310 GO:0016604 GO:0016740 GO:0016772 GO:0016773 GO:0017148 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031516 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0036211 GO:0038023 GO:0042221 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046685 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051606 GO:0051716 GO:0055122 GO:0060089 GO:0060255 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0071491 GO:0071704 GO:0080090 GO:0097159 GO:0104004 GO:0140096 GO:1901363 GO:1901564 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

162

Amino Acids

18.21

Weight (kDa)

8.37

Isoelectric Point (pI)

48.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 363
AciI CCGC 3 cut(s) 95, 256, 381
AclWI GGATC 2 cut(s) 393, 446
AcsI RAATTY 1 cut(s) 79
AgsI TTSAA 1 cut(s) 225
AluBI AGCT 3 cut(s) 87, 307, 354
AluI AGCT 3 cut(s) 87, 307, 354
Alw21I GWGCWC 1 cut(s) 356
AlwI GGATC 2 cut(s) 393, 446
Ama87I CYCGRG 1 cut(s) 349
ApeKI GCWGC 1 cut(s) 307
ApoI RAATTY 1 cut(s) 79
AseI ATTAAT 1 cut(s) 33
Asp700I GAANNNNTTC 1 cut(s) 217
AspA2I CCTAGG 1 cut(s) 395
AspLEI GCGC 2 cut(s) 363, 365
AsuHPI GGTGA 1 cut(s) 154
AsuNHI GCTAGC 1 cut(s) 473
AvaI CYCGRG 1 cut(s) 349
AvrII CCTAGG 1 cut(s) 395
BanII GRGCYC 1 cut(s) 356
BbsI GAAGAC 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 356
BbvI GCAGC 1 cut(s) 294
BccI CCATC 2 cut(s) 133, 435
BcgI CGANNNNNNTGC 2 cut(s) 340, 374
BfaI CTAG 5 cut(s) 231, 261, 273, 396, 474
BisI GCNGC 1 cut(s) 308
BlnI CCTAGG 1 cut(s) 395
BlsI GCNGC 1 cut(s) 309
BmeT110I CYCGRG 1 cut(s) 349
BmiI GGNNCC 1 cut(s) 93
BmsI GCATC 2 cut(s) 289, 456
BmtI GCTAGC 1 cut(s) 477
BpiI GAAGAC 1 cut(s) 210
Bsa29I ATCGAT 1 cut(s) 450
BsaBI GATNNNNATC 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 395
Bse8I GATNNNNATC 1 cut(s) 143
BseCI ATCGAT 1 cut(s) 450
BseDI CCNNGG 1 cut(s) 395
BseGI GGATG 1 cut(s) 471
BseJI GATNNNNATC 1 cut(s) 143
BseMII CTCAG 2 cut(s) 299, 369
BsePI GCGCGC 1 cut(s) 361
BseRI GAGGAG 1 cut(s) 338
BseXI GCAGC 1 cut(s) 294
BseYI CCCAGC 1 cut(s) 87
Bsh1236I CGCG 1 cut(s) 363
BshVI ATCGAT 1 cut(s) 450
BsiHKAI GWGCWC 1 cut(s) 356
BsiHKCI CYCGRG 1 cut(s) 349
BsoBI CYCGRG 1 cut(s) 349
Bsp1286I GDGCHC 1 cut(s) 356
Bsp143I GATC 4 cut(s) 144, 385, 447, 451
BspACI CCGC 3 cut(s) 95, 256, 381
BspCNI CTCAG 2 cut(s) 298, 368
BspDI ATCGAT 1 cut(s) 450
BspFNI CGCG 1 cut(s) 363
BspLI GGNNCC 1 cut(s) 93
BspOI GCTAGC 1 cut(s) 477
BspPI GGATC 2 cut(s) 393, 446
BssECI CCNNGG 1 cut(s) 395
BssHII GCGCGC 1 cut(s) 361
BssMI GATC 4 cut(s) 144, 385, 447, 451
BssT1I CCWWGG 1 cut(s) 395
Bst4CI ACNGT 3 cut(s) 269, 295, 460
Bst6I CTCTTC 1 cut(s) 77
BstC8I GCNNGC 5 cut(s) 312, 363, 367, 471, 475
BstDEI CTNAG 3 cut(s) 285, 355, 479
BstF5I GGATG 1 cut(s) 471
BstFNI CGCG 1 cut(s) 363
BstHHI GCGC 2 cut(s) 363, 365
BstKTI GATC 4 cut(s) 147, 388, 450, 454
BstMBI GATC 4 cut(s) 144, 385, 447, 451
BstMWI GCNNNNNNNGC 1 cut(s) 360
BstNSI RCATGY 1 cut(s) 314
BstUI CGCG 1 cut(s) 363
BstV1I GCAGC 1 cut(s) 294
BstV2I GAAGAC 1 cut(s) 210
BstXI CCANNNNNNTGG 1 cut(s) 462
Bsu15I ATCGAT 1 cut(s) 450
BsuTUI ATCGAT 1 cut(s) 450
BtsCI GGATG 1 cut(s) 471
BtsI GCAGTG 1 cut(s) 414
BtsIMutI CAGTG 3 cut(s) 274, 363, 414
Cac8I GCNNGC 5 cut(s) 312, 363, 367, 471, 475
CfoI GCGC 2 cut(s) 363, 365
ClaI ATCGAT 1 cut(s) 450
CviAII CATG 3 cut(s) 43, 107, 311
CviJI RGCY 5 cut(s) 87, 162, 307, 354, 477
CviKI_1 RGCY 5 cut(s) 87, 162, 307, 354, 477
DdeI CTNAG 3 cut(s) 285, 355, 479
DpnI GATC 4 cut(s) 146, 387, 449, 453
DpnII GATC 4 cut(s) 144, 385, 447, 451
Eam1104I CTCTTC 1 cut(s) 77
EarI CTCTTC 1 cut(s) 77
Ecl136II GAGCTC 1 cut(s) 354
Eco130I CCWWGG 1 cut(s) 395
Eco24I GRGCYC 1 cut(s) 356
Eco32I GATATC 1 cut(s) 103
Eco53kI GAGCTC 1 cut(s) 354
Eco88I CYCGRG 1 cut(s) 349
EcoICRI GAGCTC 1 cut(s) 354
EcoRV GATATC 1 cut(s) 103
EcoT14I CCWWGG 1 cut(s) 395
EcoT38I GRGCYC 1 cut(s) 356
ErhI CCWWGG 1 cut(s) 395
FaeI CATG 3 cut(s) 46, 110, 314
FaiI YATR 6 cut(s) 44, 108, 159, 312, 321, 434
FatI CATG 3 cut(s) 42, 106, 310
FauI CCCGC 1 cut(s) 374
Fnu4HI GCNGC 1 cut(s) 308
FokI GGATG 1 cut(s) 478
FriOI GRGCYC 1 cut(s) 356
Fsp4HI GCNGC 1 cut(s) 308
FspBI CTAG 5 cut(s) 231, 261, 273, 396, 474
GlaI GCGC 2 cut(s) 362, 364
GluI GCNGC 1 cut(s) 308
GsaI CCCAGC 1 cut(s) 91
HhaI GCGC 2 cut(s) 363, 365
Hin1II CATG 3 cut(s) 46, 110, 314
Hin6I GCGC 2 cut(s) 361, 363
HinP1I GCGC 2 cut(s) 361, 363
HinfI GANTC 1 cut(s) 326
HphI GGTGA 1 cut(s) 154
Hpy188I TCNGA 2 cut(s) 288, 403
Hpy188III TCNNGA 2 cut(s) 225, 261
HpyAV CCTTC 2 cut(s) 118, 433
HpyCH4III ACNGT 3 cut(s) 269, 295, 460
HpyCH4V TGCA 3 cut(s) 302, 310, 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 360
HpyF3I CTNAG 3 cut(s) 285, 355, 479
Hsp92II CATG 3 cut(s) 46, 110, 314
HspAI GCGC 2 cut(s) 361, 363
Kzo9I GATC 4 cut(s) 144, 385, 447, 451
LpnPI CCDG 6 cut(s) 73, 111, 237, 256, 315, 351
Lsp1109I GCAGC 1 cut(s) 294
LweI GCATC 2 cut(s) 289, 456
MaeI CTAG 5 cut(s) 231, 261, 273, 396, 474
MaeIII GTNAC 1 cut(s) 409
MalI GATC 4 cut(s) 146, 387, 449, 453
MboI GATC 4 cut(s) 144, 385, 447, 451
MboII GAAGA 3 cut(s) 64, 210, 213
MhlI GDGCHC 1 cut(s) 356
MluCI AATT 3 cut(s) 79, 118, 247
MlyI GAGTC 1 cut(s) 335
MmeI TCCRAC 1 cut(s) 479
MnlI CCTC 1 cut(s) 316
MroXI GAANNNNTTC 1 cut(s) 217
MseI TTAA 3 cut(s) 12, 33, 117
MspA1I CMGCKG 1 cut(s) 87
MvnI CGCG 1 cut(s) 363
MwoI GCNNNNNNNGC 1 cut(s) 360
NdeII GATC 4 cut(s) 144, 385, 447, 451
NheI GCTAGC 1 cut(s) 473
NlaIII CATG 3 cut(s) 46, 110, 314
NlaIV GGNNCC 1 cut(s) 93
NmuCI GTSAC 1 cut(s) 409
NspI RCATGY 1 cut(s) 314
PaeI GCATGC 1 cut(s) 314
PaeR7I CTCGAG 1 cut(s) 349
PauI GCGCGC 1 cut(s) 361
PcsI WCGNNNNNNNCGW 1 cut(s) 456
PdmI GAANNNNTTC 1 cut(s) 217
PkrI GCNGC 1 cut(s) 309
PleI GAGTC 1 cut(s) 334
PpsI GAGTC 1 cut(s) 334
PshBI ATTAAT 1 cut(s) 33
Psp124BI GAGCTC 1 cut(s) 356
PspFI CCCAGC 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 93
PspXI VCTCGAGB 1 cut(s) 349
PteI GCGCGC 1 cut(s) 361
PvuII CAGCTG 1 cut(s) 87
SacI GAGCTC 1 cut(s) 356
SaqAI TTAA 3 cut(s) 12, 33, 117
SatI GCNGC 1 cut(s) 308
Sau3AI GATC 4 cut(s) 144, 385, 447, 451
SchI GAGTC 1 cut(s) 335
SduI GDGCHC 1 cut(s) 356
SetI ASST 7 cut(s) 89, 232, 309, 334, 356, 397, 401
SfaNI GCATC 2 cut(s) 289, 456
Sfr274I CTCGAG 1 cut(s) 349
SlaI CTCGAG 1 cut(s) 349
SmlI CTYRAG 1 cut(s) 349
SmoI CTYRAG 1 cut(s) 349
SphI GCATGC 1 cut(s) 314
Sse9I AATT 3 cut(s) 79, 118, 247
SsiI CCGC 3 cut(s) 95, 256, 381
SspI AATATT 2 cut(s) 31, 113
SspMI CTAG 5 cut(s) 231, 261, 273, 396, 474
SstI GAGCTC 1 cut(s) 356
StyI CCWWGG 1 cut(s) 395
TaaI ACNGT 3 cut(s) 269, 295, 460
TaqI TCGA 2 cut(s) 350, 450
TasI AATT 3 cut(s) 79, 118, 247
Tru1I TTAA 3 cut(s) 12, 33, 117
Tru9I TTAA 3 cut(s) 12, 33, 117
TscAI CASTG 3 cut(s) 274, 363, 421
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 1 cut(s) 307
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 2 cut(s) 17, 123
TspRI CASTG 3 cut(s) 274, 363, 421
VspI ATTAAT 1 cut(s) 33
XapI RAATTY 1 cut(s) 79
XbaI TCTAGA 1 cut(s) 260
XceI RCATGY 1 cut(s) 314
XcmI CCANNNNNNNNNTGG 1 cut(s) 84
XhoI CTCGAG 1 cut(s) 349
XmaJI CCTAGG 1 cut(s) 395
XmnI GAANNNNTTC 1 cut(s) 217
XspI CTAG 5 cut(s) 231, 261, 273, 396, 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.