pycom04g16520

protein self-association

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Forward (+)
19208650 .. 19210303
1654 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 345 bp
ATGTCAATTTCGGAGAAATCAAGGCCGTGCTCACCTTCCTCATCTTCCTTATCACTGTCACCGATGTCAGTCCACGATTTTGATCCGTTGCTGAAAGATTTGAATGAGAGGAAGCAGAGTTTTCGCCGGAATGTGGTGTCGTTGGCATCGGAGTTGAAAGATGTTCGGAGCCGGTTAGCGTCTCAGGAGCAATCATTTGTTAAAGAAACCCTCACAAGACAGGAAGCAGAGACAAAAGCCAAACACTTGGAAGAGGACATTAGCATAATGCAGAAGAGATTGGAACAGAGAAATCAGCAGCTTGAGGTCTCAGCATCTGCGGCCGAGAAGACGTGTGGAAGTTAA

Protein Analysis

115

Amino Acids

12.85

Weight (kDa)

7.8

Isoelectric Point (pI)

76.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 320
AclWI GGATC 1 cut(s) 77
AcoI YGGCCR 1 cut(s) 321
AfiI CCNNNNNNNGG 1 cut(s) 133
AflIII ACRYGT 1 cut(s) 332
AgsI TTSAA 2 cut(s) 103, 157
AjiI CACGTC 1 cut(s) 333
AluBI AGCT 1 cut(s) 301
AluI AGCT 1 cut(s) 301
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 3 cut(s) 186, 224, 313
AlwI GGATC 1 cut(s) 77
AlwNI CAGNNNCTG 1 cut(s) 317
AoxI GGCC 2 cut(s) 23, 321
ApeKI GCWGC 1 cut(s) 298
AsuHPI GGTGA 2 cut(s) 24, 51
BbsI GAAGAC 1 cut(s) 335
Bbv12I GWGCWC 1 cut(s) 32
BbvI GCAGC 1 cut(s) 310
BceAI ACGGC 1 cut(s) 10
BcgI CGANNNNNNTGC 2 cut(s) 104, 138
BcoDI GTCTC 3 cut(s) 186, 224, 313
BisI GCNGC 2 cut(s) 299, 321
BlsI GCNGC 2 cut(s) 300, 322
BmgBI CACGTC 1 cut(s) 333
BmiI GGNNCC 1 cut(s) 170
BmsI GCATC 2 cut(s) 155, 323
BpiI GAAGAC 1 cut(s) 335
BpuEI CTTGAG 1 cut(s) 323
BsaBI GATNNNNATC 1 cut(s) 81
BsaI GGTCTC 1 cut(s) 313
Bsc4I CCNNNNNNNGG 1 cut(s) 133
Bse118I RCCGGY 1 cut(s) 171
Bse8I GATNNNNATC 1 cut(s) 81
BseJI GATNNNNATC 1 cut(s) 81
BseLI CCNNNNNNNGG 1 cut(s) 133
BseMII CTCAG 2 cut(s) 197, 324
BseX3I CGGCCG 1 cut(s) 321
BseXI GCAGC 1 cut(s) 310
Bsh1285I CGRYCG 1 cut(s) 324
BshFI GGCC 2 cut(s) 25, 323
BsiEI CGRYCG 1 cut(s) 324
BsiHKAI GWGCWC 1 cut(s) 32
BsiSI CCGG 2 cut(s) 127, 172
BslI CCNNNNNNNGG 1 cut(s) 133
BsmAI GTCTC 3 cut(s) 186, 224, 313
BsmBI CGTCTC 1 cut(s) 186
BsnI GGCC 2 cut(s) 25, 323
Bso31I GGTCTC 1 cut(s) 313
Bsp1286I GDGCHC 1 cut(s) 32
Bsp143I GATC 1 cut(s) 82
BspACI CCGC 1 cut(s) 320
BspANI GGCC 2 cut(s) 25, 323
BspCNI CTCAG 2 cut(s) 196, 323
BspLI GGNNCC 1 cut(s) 170
BspPI GGATC 1 cut(s) 77
BspTNI GGTCTC 1 cut(s) 313
BsrFI RCCGGY 1 cut(s) 171
BssAI RCCGGY 1 cut(s) 171
BssMI GATC 1 cut(s) 82
Bst4CI ACNGT 1 cut(s) 57
Bst6I CTCTTC 2 cut(s) 246, 269
BstDEI CTNAG 2 cut(s) 183, 310
BstKTI GATC 1 cut(s) 85
BstMAI GTCTC 3 cut(s) 186, 224, 313
BstMBI GATC 1 cut(s) 82
BstMCI CGRYCG 1 cut(s) 324
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstV1I GCAGC 1 cut(s) 310
BstV2I GAAGAC 1 cut(s) 335
BstXI CCANNNNNNTGG 1 cut(s) 247
BstZI CGGCCG 1 cut(s) 321
BsuRI GGCC 2 cut(s) 25, 323
BtrI CACGTC 1 cut(s) 333
BtsIMutI CAGTG 1 cut(s) 53
CaiI CAGNNNCTG 1 cut(s) 317
Cfr10I RCCGGY 1 cut(s) 171
CseI GACGC 1 cut(s) 168
CviJI RGCY 5 cut(s) 25, 171, 239, 301, 323
CviKI_1 RGCY 5 cut(s) 25, 171, 239, 301, 323
DdeI CTNAG 2 cut(s) 183, 310
DpnI GATC 1 cut(s) 84
DpnII GATC 1 cut(s) 82
EaeI YGGCCR 1 cut(s) 321
EagI CGGCCG 1 cut(s) 321
Eam1104I CTCTTC 2 cut(s) 246, 269
EarI CTCTTC 2 cut(s) 246, 269
EclXI CGGCCG 1 cut(s) 321
Eco31I GGTCTC 1 cut(s) 313
Eco52I CGGCCG 1 cut(s) 321
Esp3I CGTCTC 1 cut(s) 186
FaiI YATR 1 cut(s) 266
Fnu4HI GCNGC 2 cut(s) 299, 321
Fsp4HI GCNGC 2 cut(s) 299, 321
GluI GCNGC 2 cut(s) 299, 321
HaeIII GGCC 2 cut(s) 25, 323
HapII CCGG 2 cut(s) 127, 172
HgaI GACGC 1 cut(s) 168
HpaII CCGG 2 cut(s) 127, 172
HphI GGTGA 2 cut(s) 24, 51
Hpy166II GTNNAC 1 cut(s) 73
Hpy188I TCNGA 3 cut(s) 13, 151, 168
Hpy188III TCNNGA 1 cut(s) 185
Hpy8I GTNNAC 1 cut(s) 73
HpyAV CCTTC 1 cut(s) 45
HpyCH4III ACNGT 1 cut(s) 57
HpyCH4IV ACGT 1 cut(s) 332
HpyCH4V TGCA 1 cut(s) 271
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpyF3I CTNAG 2 cut(s) 183, 310
HpySE526I ACGT 1 cut(s) 332
Kzo9I GATC 1 cut(s) 82
LmnI GCTCC 2 cut(s) 168, 187
LpnPI CCDG 4 cut(s) 140, 170, 185, 206
Lsp1109I GCAGC 1 cut(s) 310
LweI GCATC 2 cut(s) 155, 323
MaeII ACGT 1 cut(s) 332
MaeIII GTNAC 1 cut(s) 57
MalI GATC 1 cut(s) 84
MboI GATC 1 cut(s) 82
MboII GAAGA 4 cut(s) 36, 263, 286, 340
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 1 cut(s) 6
MnlI CCTC 5 cut(s) 49, 102, 221, 247, 298
MseI TTAA 2 cut(s) 201, 343
MspI CCGG 2 cut(s) 127, 172
MwoI GCNNNNNNNGC 1 cut(s) 320
NdeII GATC 1 cut(s) 82
NlaIV GGNNCC 1 cut(s) 170
NmuCI GTSAC 1 cut(s) 57
PkrI GCNGC 2 cut(s) 300, 322
PspN4I GGNNCC 1 cut(s) 170
PstNI CAGNNNCTG 1 cut(s) 317
SaqAI TTAA 2 cut(s) 201, 343
SatI GCNGC 2 cut(s) 299, 321
Sau3AI GATC 1 cut(s) 82
SduI GDGCHC 1 cut(s) 32
SetI ASST 4 cut(s) 37, 303, 309, 335
SfaNI GCATC 2 cut(s) 155, 323
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 1 cut(s) 6
SsiI CCGC 1 cut(s) 320
TaaI ACNGT 1 cut(s) 57
TaiI ACGT 1 cut(s) 335
TasI AATT 1 cut(s) 6
TauI GCSGC 1 cut(s) 323
Tru1I TTAA 2 cut(s) 201, 343
Tru9I TTAA 2 cut(s) 201, 343
TscAI CASTG 1 cut(s) 60
TseFI GTSAC 1 cut(s) 57
TseI GCWGC 1 cut(s) 298
Tsp45I GTSAC 1 cut(s) 57
TspGWI ACGGA 1 cut(s) 75
TspRI CASTG 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.