pycom04g16690

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Reverse (-)
19335608 .. 19335790
183 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 183 bp
ATGTTTGAATCGGATCAAACGCTTCTGACTAGCCGGTCGACGGCCGGGATTGTAAGGAACAATGCCGTATCTGGTGCTGCATGGGCTATCAAGTTAGGAGCAGCCATGGTGAAAATGGGATCTATTGATGCCCTCACAGGAAGACAGGGCGAGATCAAGAAGAACTGCAGGGTTGTAAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

61

Amino Acids

6.34

Weight (kDa)

10.02

Isoelectric Point (pI)

21.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 34
AccI GTMKAC 1 cut(s) 38
AclWI GGATC 2 cut(s) 21, 127
AcoI YGGCCR 1 cut(s) 42
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 1 cut(s) 8
AlwI GGATC 2 cut(s) 21, 127
AoxI GGCC 1 cut(s) 42
ApeKI GCWGC 2 cut(s) 77, 101
AsuC2I CCSGG 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 121
BbsI GAAGAC 1 cut(s) 148
BbvI GCAGC 2 cut(s) 64, 113
BceAI ACGGC 2 cut(s) 50, 57
BcnI CCSGG 1 cut(s) 46
BfaI CTAG 1 cut(s) 30
BfmI CTRYAG 1 cut(s) 166
BisI GCNGC 2 cut(s) 78, 102
BlsI GCNGC 2 cut(s) 79, 103
Bme1390I CCNGG 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 46
BmsI GCATC 1 cut(s) 118
BpiI GAAGAC 1 cut(s) 148
BpuMI CCSGG 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 105
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse118I RCCGGY 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 105
BseLI CCNNNNNNNGG 1 cut(s) 40
BseX3I CGGCCG 1 cut(s) 42
BseXI GCAGC 2 cut(s) 64, 113
Bsh1285I CGRYCG 2 cut(s) 38, 45
BshFI GGCC 1 cut(s) 44
BsiEI CGRYCG 2 cut(s) 38, 45
BsiSI CCGG 2 cut(s) 34, 45
BslI CCNNNNNNNGG 1 cut(s) 40
BsnI GGCC 1 cut(s) 44
Bsp143I GATC 3 cut(s) 13, 119, 153
Bsp19I CCATGG 1 cut(s) 105
BspANI GGCC 1 cut(s) 44
BspMAI CTGCAG 1 cut(s) 170
BspPI GGATC 2 cut(s) 21, 127
BsrFI RCCGGY 1 cut(s) 33
BssAI RCCGGY 1 cut(s) 33
BssECI CCNNGG 1 cut(s) 105
BssMI GATC 3 cut(s) 13, 119, 153
BssT1I CCWWGG 1 cut(s) 105
BstDSI CCRYGG 1 cut(s) 105
BstKTI GATC 3 cut(s) 16, 122, 156
BstMBI GATC 3 cut(s) 13, 119, 153
BstMCI CGRYCG 2 cut(s) 38, 45
BstMWI GCNNNNNNNGC 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 44
BstSFI CTRYAG 1 cut(s) 166
BstV1I GCAGC 2 cut(s) 64, 113
BstV2I GAAGAC 1 cut(s) 148
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
BstZI CGGCCG 1 cut(s) 42
BsuRI GGCC 1 cut(s) 44
BtgI CCRYGG 1 cut(s) 105
Cfr10I RCCGGY 1 cut(s) 33
CviAII CATG 2 cut(s) 81, 106
CviJI RGCY 4 cut(s) 33, 44, 86, 104
CviKI_1 RGCY 4 cut(s) 33, 44, 86, 104
DpnI GATC 3 cut(s) 15, 121, 155
DpnII GATC 3 cut(s) 13, 119, 153
DrdI GACNNNNNNGTC 1 cut(s) 34
DseDI GACNNNNNNGTC 1 cut(s) 34
EaeI YGGCCR 1 cut(s) 42
EagI CGGCCG 1 cut(s) 42
EclXI CGGCCG 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 105
Eco52I CGGCCG 1 cut(s) 42
EcoT14I CCWWGG 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 105
FaeI CATG 2 cut(s) 84, 109
FaiI YATR 2 cut(s) 82, 107
FatI CATG 2 cut(s) 80, 105
FblI GTMKAC 1 cut(s) 38
Fnu4HI GCNGC 2 cut(s) 78, 102
Fsp4HI GCNGC 2 cut(s) 78, 102
FspBI CTAG 1 cut(s) 30
GluI GCNGC 2 cut(s) 78, 102
HaeIII GGCC 1 cut(s) 44
HapII CCGG 2 cut(s) 34, 45
Hin1II CATG 2 cut(s) 84, 109
HincII GTYRAC 1 cut(s) 39
HindII GTYRAC 1 cut(s) 39
HinfI GANTC 1 cut(s) 8
HpaII CCGG 2 cut(s) 34, 45
HphI GGTGA 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 39
Hpy188I TCNGA 2 cut(s) 13, 27
Hpy188III TCNNGA 1 cut(s) 157
Hpy8I GTNNAC 1 cut(s) 39
Hpy99I CGWCG 1 cut(s) 43
HpyCH4V TGCA 2 cut(s) 80, 168
HpyF10VI GCNNNNNNNGC 1 cut(s) 83
Hsp92II CATG 2 cut(s) 84, 109
Kzo9I GATC 3 cut(s) 13, 119, 153
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 6 cut(s) 47, 57, 58, 123, 131, 154
Lsp1109I GCAGC 2 cut(s) 64, 113
LweI GCATC 1 cut(s) 118
MaeI CTAG 1 cut(s) 30
MalI GATC 3 cut(s) 15, 121, 155
MboI GATC 3 cut(s) 13, 119, 153
MboII GAAGA 2 cut(s) 153, 172
MflI RGATCY 1 cut(s) 119
MluCI AATT 1 cut(s) 178
MnlI CCTC 1 cut(s) 143
MspI CCGG 2 cut(s) 34, 45
MspR9I CCNGG 1 cut(s) 46
MwoI GCNNNNNNNGC 1 cut(s) 83
NciI CCSGG 1 cut(s) 46
NcoI CCATGG 1 cut(s) 105
NdeII GATC 3 cut(s) 13, 119, 153
NlaIII CATG 2 cut(s) 84, 109
PfeI GAWTC 1 cut(s) 8
PkrI GCNGC 2 cut(s) 79, 103
PstI CTGCAG 1 cut(s) 170
PsuI RGATCY 1 cut(s) 119
SalI GTCGAC 1 cut(s) 37
SatI GCNGC 2 cut(s) 78, 102
Sau3AI GATC 3 cut(s) 13, 119, 153
ScrFI CCNGG 1 cut(s) 46
SfaNI GCATC 1 cut(s) 118
SfcI CTRYAG 1 cut(s) 166
Sse9I AATT 1 cut(s) 178
SspMI CTAG 1 cut(s) 30
StyD4I CCNGG 1 cut(s) 44
StyI CCWWGG 1 cut(s) 105
TaqI TCGA 1 cut(s) 38
TasI AATT 1 cut(s) 178
TfiI GAWTC 1 cut(s) 8
TseI GCWGC 2 cut(s) 77, 101
XcmI CCANNNNNNNNNTGG 1 cut(s) 112
XmiI GTMKAC 1 cut(s) 38
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.