pycom04g17050

RNA polymerase II-associated protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Forward (+)
19602675 .. 19604287
1613 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 369 bp
ATGAAGGCATCGGTACAAGAGCTTGCTTCTCGAGATGCTTCCAAAGCCAAGTCTATGTCTGCTACTGCATTGCTGCAGATTTTCAAAAATGCTTCGACTGTTCCCGTACTAATTGACATTATCAAATGCGTGGCGACCTTTTTAGTTGAAGAAATGGATTTGGCCGTCAATTATTTGGAAAAGTTAACCAAGACCTTGATAAGATATGGGATGAAGTATTCTACAACGAGGCAACTCCAATCGCATAGGCATGGAAGCTTGATAAGTTGCGTGCAAAGTACTGCCTTGAGTGATGAAAACAAATCAAAATTTTACCTTCCGTCGACCTCCACGGTAGTTTTTCTATTCCGGTCAAAGCCTTTGCTGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

123

Amino Acids

13.59

Weight (kDa)

9.61

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 323
AcoI YGGCCR 1 cut(s) 162
AcsI RAATTY 1 cut(s) 308
AfaI GTAC 3 cut(s) 15, 108, 280
AgsI TTSAA 2 cut(s) 85, 149
AluBI AGCT 2 cut(s) 22, 258
AluI AGCT 2 cut(s) 22, 258
Ama87I CYCGRG 1 cut(s) 30
AoxI GGCC 1 cut(s) 162
ApeKI GCWGC 1 cut(s) 73
ApoI RAATTY 1 cut(s) 308
AvaI CYCGRG 1 cut(s) 30
BbvI GCAGC 1 cut(s) 60
BceAI ACGGC 1 cut(s) 149
BfmI CTRYAG 1 cut(s) 74
BisI GCNGC 1 cut(s) 74
BlsI GCNGC 1 cut(s) 75
BmcAI AGTACT 1 cut(s) 280
BmeT110I CYCGRG 1 cut(s) 30
BmsI GCATC 2 cut(s) 17, 25
BpuEI CTTGAG 1 cut(s) 307
BsaJI CCNNGG 1 cut(s) 330
BsaWI WCCGGW 1 cut(s) 348
Bse3DI GCAATG 1 cut(s) 68
BseDI CCNNGG 1 cut(s) 330
BseGI GGATG 1 cut(s) 216
BseMI GCAATG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 60
BshFI GGCC 1 cut(s) 164
BsiHKCI CYCGRG 1 cut(s) 30
BsiSI CCGG 1 cut(s) 349
BsnI GGCC 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 30
BspANI GGCC 1 cut(s) 164
BspMAI CTGCAG 1 cut(s) 78
BsrDI GCAATG 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 330
Bst4CI ACNGT 2 cut(s) 100, 334
BstC8I GCNNGC 2 cut(s) 24, 272
BstDSI CCRYGG 1 cut(s) 330
BstF5I GGATG 1 cut(s) 216
BstMWI GCNNNNNNNGC 1 cut(s) 44
BstSFI CTRYAG 1 cut(s) 74
BstV1I GCAGC 1 cut(s) 60
BsuRI GGCC 1 cut(s) 164
BtgI CCRYGG 1 cut(s) 330
BtsCI GGATG 1 cut(s) 216
Cac8I GCNNGC 2 cut(s) 24, 272
Csp6I GTAC 3 cut(s) 14, 107, 279
CviAII CATG 1 cut(s) 251
CviJI RGCY 5 cut(s) 22, 47, 164, 258, 358
CviKI_1 RGCY 5 cut(s) 22, 47, 164, 258, 358
CviQI GTAC 3 cut(s) 14, 107, 279
EaeI YGGCCR 1 cut(s) 162
Eco88I CYCGRG 1 cut(s) 30
FaeI CATG 1 cut(s) 254
FaiI YATR 4 cut(s) 56, 207, 246, 252
FatI CATG 1 cut(s) 250
FblI GTMKAC 1 cut(s) 323
Fnu4HI GCNGC 1 cut(s) 74
FokI GGATG 1 cut(s) 223
Fsp4HI GCNGC 1 cut(s) 74
GluI GCNGC 1 cut(s) 74
HaeIII GGCC 1 cut(s) 164
HapII CCGG 1 cut(s) 349
Hin1II CATG 1 cut(s) 254
HincII GTYRAC 2 cut(s) 186, 324
HindII GTYRAC 2 cut(s) 186, 324
HindIII AAGCTT 1 cut(s) 256
HpaI GTTAAC 1 cut(s) 186
HpaII CCGG 1 cut(s) 349
Hpy166II GTNNAC 2 cut(s) 186, 324
Hpy188III TCNNGA 2 cut(s) 30, 32
Hpy8I GTNNAC 2 cut(s) 186, 324
Hpy99I CGWCG 1 cut(s) 325
HpyAV CCTTC 1 cut(s) 326
HpyCH4III ACNGT 2 cut(s) 100, 334
HpyCH4V TGCA 3 cut(s) 68, 76, 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 44
Hsp92II CATG 1 cut(s) 254
KspAI GTTAAC 1 cut(s) 186
LpnPI CCDG 1 cut(s) 362
Lsp1109I GCAGC 1 cut(s) 60
LweI GCATC 2 cut(s) 17, 25
MboII GAAGA 1 cut(s) 161
MluCI AATT 3 cut(s) 111, 169, 308
MnlI CCTC 2 cut(s) 222, 337
MseI TTAA 1 cut(s) 185
MslI CAYNNNNRTG 1 cut(s) 249
MspI CCGG 1 cut(s) 349
MwoI GCNNNNNNNGC 1 cut(s) 44
NlaIII CATG 1 cut(s) 254
PaeR7I CTCGAG 1 cut(s) 30
PkrI GCNGC 1 cut(s) 75
PstI CTGCAG 1 cut(s) 78
RsaI GTAC 3 cut(s) 15, 108, 280
RsaNI GTAC 3 cut(s) 14, 107, 279
RseI CAYNNNNRTG 1 cut(s) 249
SalI GTCGAC 1 cut(s) 322
SaqAI TTAA 1 cut(s) 185
SatI GCNGC 1 cut(s) 74
ScaI AGTACT 1 cut(s) 280
SetI ASST 6 cut(s) 24, 140, 197, 260, 318, 329
SfaNI GCATC 2 cut(s) 17, 25
SfcI CTRYAG 1 cut(s) 74
Sfr274I CTCGAG 1 cut(s) 30
SlaI CTCGAG 1 cut(s) 30
SmiMI CAYNNNNRTG 1 cut(s) 249
SmlI CTYRAG 2 cut(s) 30, 286
SmoI CTYRAG 2 cut(s) 30, 286
Sse9I AATT 3 cut(s) 111, 169, 308
TaaI ACNGT 2 cut(s) 100, 334
TaqI TCGA 3 cut(s) 31, 95, 323
TasI AATT 3 cut(s) 111, 169, 308
TatI WGTACW 1 cut(s) 278
Tru1I TTAA 1 cut(s) 185
Tru9I TTAA 1 cut(s) 185
TseI GCWGC 1 cut(s) 73
TspDTI ATGAA 3 cut(s) 17, 227, 309
TspGWI ACGGA 1 cut(s) 309
XapI RAATTY 1 cut(s) 308
XhoI CTCGAG 1 cut(s) 30
XmiI GTMKAC 1 cut(s) 323
ZrmI AGTACT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.