pycom04g17240

Zinc finger matrin-type protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Reverse (-)
19696433 .. 19697059
627 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 264 bp
ATGCGGGTAGAGCGGGCATCACTCCAACAGGTTCAGGAGCGATTTGAAAAGCTCAAGAAGCGGAAAACTGATGGAACTTTCACAGAGCAAGATCTTGATGAGCGGATCCTGAAGCAGCAGCAAGAAGAGGAAGAGCGGAAGCGCCAGCGTCGGGAAAGGAAGAAAGAGAAGAAGAAAGAGAAGGTAGTCGAAGAGGAAACGGAAATTGATCCCGACGTTGCAGCTATGATGGGATTTGGAGGATTTGGTTCAACCAAGAAGTGA

Protein Analysis

88

Amino Acids

10.47

Weight (kDa)

9.22

Isoelectric Point (pI)

70.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 3 cut(s) 13, 103, 136
AciI CCGC 5 cut(s) 4, 13, 61, 103, 136
AclWI GGATC 3 cut(s) 100, 113, 203
AcuI CTGAAG 1 cut(s) 131
AfiI CCNNNNNNNGG 1 cut(s) 151
AgsI TTSAA 2 cut(s) 47, 252
AluBI AGCT 2 cut(s) 52, 224
AluI AGCT 2 cut(s) 52, 224
AlwI GGATC 3 cut(s) 100, 113, 203
ApeKI GCWGC 3 cut(s) 115, 118, 221
AspLEI GCGC 1 cut(s) 144
BamHI GGATCC 1 cut(s) 105
BbvI GCAGC 3 cut(s) 127, 130, 233
BccI CCATC 2 cut(s) 65, 223
BfoI RGCGCY 1 cut(s) 145
BglII AGATCT 1 cut(s) 91
BisI GCNGC 3 cut(s) 116, 119, 222
BlsI GCNGC 3 cut(s) 117, 120, 223
BmiI GGNNCC 1 cut(s) 107
BmsI GCATC 1 cut(s) 26
BpuEI CTTGAG 1 cut(s) 38
Bsc4I CCNNNNNNNGG 1 cut(s) 151
BseLI CCNNNNNNNGG 1 cut(s) 151
BseXI GCAGC 3 cut(s) 127, 130, 233
BslI CCNNNNNNNGG 1 cut(s) 151
Bsp143I GATC 3 cut(s) 91, 105, 208
BspACI CCGC 5 cut(s) 4, 13, 61, 103, 136
BspLI GGNNCC 1 cut(s) 107
BspPI GGATC 3 cut(s) 100, 113, 203
BspQI GCTCTTC 1 cut(s) 126
BsrBI CCGCTC 3 cut(s) 13, 103, 136
BssMI GATC 3 cut(s) 91, 105, 208
Bst6I CTCTTC 3 cut(s) 120, 126, 186
BstC8I GCNNGC 2 cut(s) 15, 146
BstH2I RGCGCY 1 cut(s) 145
BstHHI GCGC 1 cut(s) 144
BstKTI GATC 3 cut(s) 94, 108, 211
BstMBI GATC 3 cut(s) 91, 105, 208
BstMWI GCNNNNNNNGC 2 cut(s) 10, 58
BstV1I GCAGC 3 cut(s) 127, 130, 233
BstX2I RGATCY 2 cut(s) 91, 105
BstYI RGATCY 2 cut(s) 91, 105
Cac8I GCNNGC 2 cut(s) 15, 146
CfoI GCGC 1 cut(s) 144
CseI GACGC 1 cut(s) 137
CviJI RGCY 2 cut(s) 52, 224
CviKI_1 RGCY 2 cut(s) 52, 224
DpnI GATC 3 cut(s) 93, 107, 210
DpnII GATC 3 cut(s) 91, 105, 208
Eam1104I CTCTTC 3 cut(s) 120, 126, 186
EarI CTCTTC 3 cut(s) 120, 126, 186
Eco57I CTGAAG 1 cut(s) 131
FaiI YATR 1 cut(s) 227
FauI CCCGC 1 cut(s) 6
Fnu4HI GCNGC 3 cut(s) 116, 119, 222
Fsp4HI GCNGC 3 cut(s) 116, 119, 222
GlaI GCGC 1 cut(s) 143
GluI GCNGC 3 cut(s) 116, 119, 222
HaeII RGCGCY 1 cut(s) 145
HgaI GACGC 1 cut(s) 137
HhaI GCGC 1 cut(s) 144
Hin6I GCGC 1 cut(s) 142
HinP1I GCGC 1 cut(s) 142
Hpy188III TCNNGA 6 cut(s) 35, 55, 95, 109, 152, 212
Hpy99I CGWCG 2 cut(s) 153, 218
HpyAV CCTTC 1 cut(s) 175
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 1 cut(s) 221
HpyF10VI GCNNNNNNNGC 2 cut(s) 10, 58
HpySE526I ACGT 1 cut(s) 216
HspAI GCGC 1 cut(s) 142
Kzo9I GATC 3 cut(s) 91, 105, 208
LguI GCTCTTC 1 cut(s) 126
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 4 cut(s) 14, 20, 122, 158
Lsp1109I GCAGC 3 cut(s) 127, 130, 233
LweI GCATC 1 cut(s) 26
MaeII ACGT 1 cut(s) 216
MalI GATC 3 cut(s) 93, 107, 210
MbiI CCGCTC 3 cut(s) 13, 103, 136
MboI GATC 3 cut(s) 91, 105, 208
MboII GAAGA 6 cut(s) 137, 143, 172, 181, 184, 203
MflI RGATCY 2 cut(s) 91, 105
MluCI AATT 1 cut(s) 204
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 3 cut(s) 121, 187, 233
MwoI GCNNNNNNNGC 2 cut(s) 10, 58
NdeII GATC 3 cut(s) 91, 105, 208
NlaIV GGNNCC 1 cut(s) 107
PciSI GCTCTTC 1 cut(s) 126
PkrI GCNGC 3 cut(s) 117, 120, 223
PspN4I GGNNCC 1 cut(s) 107
PsuI RGATCY 2 cut(s) 91, 105
SapI GCTCTTC 1 cut(s) 126
SatI GCNGC 3 cut(s) 116, 119, 222
Sau3AI GATC 3 cut(s) 91, 105, 208
SetI ASST 5 cut(s) 33, 54, 186, 219, 226
SfaNI GCATC 1 cut(s) 26
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 1 cut(s) 204
SsiI CCGC 5 cut(s) 4, 13, 61, 103, 136
TaiI ACGT 1 cut(s) 219
TaqI TCGA 1 cut(s) 189
TasI AATT 1 cut(s) 204
TseI GCWGC 3 cut(s) 115, 118, 221
TspGWI ACGGA 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.