Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

19756897 .. 19758075

Gene Structure 1179 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGGACCTTCGCAAGAAACAGTCAACTTATTTGAAGCGACTCAGGCAGCAAACAGAGGGTCAAGATGGGGATGATTTAGAGATGAACCTAAATGGAAGTACATCAAGAATGGACGGTGATGATTTGGATGACATGATGTTTAATGAGCGTCAGATGGCCAAGATAAAGAAAAACGAGGCATTCACAGCAGAAAGGGAAAGAGAGATCCAACAGGTTGTGGAATCTGTGAATGAGCTTGCTCAGATTATGAAGGATTTGTCAGTACTAGTGATAGACCAGGGAACTATTGTTGATAGGATAGACTACAACATTCAGAATGTAGCAAGTACAGTCGATGAGGGCCTCAAGCAATTGCAAAAGGCTGAGAGAACACAGAAACAAGGGGGAATGGTGATGTGTGCTACCGTACTCGTTATCATGTGCTTTGTCATGTTGGTCCTCCTAATCCTCAAGGAGATATTCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0002790 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006906 GO:0006996 GO:0007030 GO:0007034 GO:0008104 GO:0008150 GO:0009306 GO:0009987 GO:0010256 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032588 GO:0032940 GO:0032991 GO:0033036 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0061024 GO:0061025 GO:0071702 GO:0071705 GO:0071840 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE

Protein Analysis

156

Amino Acids

17.81

Weight (kDa)

4.79

Isoelectric Point (pI)

33.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNARE	PF05739	95 - 147	5.4e-17	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	199
AcoI	YGGCCR	1 cut(s)	156
AfaI	GTAC	4 cut(s)	100, 264, 328, 408
AgsI	TTSAA	1 cut(s)	34
AhlI	ACTAGT	1 cut(s)	265
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	1 cut(s)	235
AluI	AGCT	1 cut(s)	235
AlwI	GGATC	1 cut(s)	199
AoxI	GGCC	2 cut(s)	156, 340
ApeKI	GCWGC	1 cut(s)	46
ArsI	GACNNNNNNTTYG	2 cut(s)	43, 75
AspS9I	GGNCC	3 cut(s)	4, 340, 436
AsuHPI	GGTGA	2 cut(s)	128, 403
AvaII	GGWCC	2 cut(s)	4, 436
BalI	TGGCCA	1 cut(s)	158
BbvI	GCAGC	1 cut(s)	58
BccI	CCATC	2 cut(s)	59, 148
BciT130I	CCWGG	1 cut(s)	278
BcuI	ACTAGT	1 cut(s)	265
BfaI	CTAG	1 cut(s)	266
BisI	GCNGC	1 cut(s)	47
BlsI	GCNGC	1 cut(s)	48
BmcAI	AGTACT	1 cut(s)	264
Bme1390I	CCNGG	1 cut(s)	278
Bme18I	GGWCC	2 cut(s)	4, 436
BmgT120I	GGNCC	3 cut(s)	4, 340, 436
BmrFI	CCNGG	1 cut(s)	278
BpuEI	CTTGAG	2 cut(s)	329, 434
BsaJI	CCNNGG	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	277
BseGI	GGATG	2 cut(s)	76, 133
BseMII	CTCAG	3 cut(s)	55, 254, 354
BseXI	GCAGC	1 cut(s)	58
BshFI	GGCC	2 cut(s)	158, 342
BsmI	GAATGC	1 cut(s)	179
BsnI	GGCC	2 cut(s)	158, 342
Bsp143I	GATC	1 cut(s)	204
BspANI	GGCC	2 cut(s)	158, 342
BspCNI	CTCAG	3 cut(s)	54, 253, 355
BspPI	GGATC	1 cut(s)	199
BssECI	CCNNGG	1 cut(s)	277
BssMI	GATC	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	4 cut(s)	21, 116, 331, 406
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	3 cut(s)	41, 240, 363
BstF5I	GGATG	2 cut(s)	76, 133
BstKTI	GATC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	204
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 185
BstNI	CCWGG	1 cut(s)	278
BstSCI	CCNGG	1 cut(s)	276
BstV1I	GCAGC	1 cut(s)	58
BstX2I	RGATCY	1 cut(s)	204
BstYI	RGATCY	1 cut(s)	204
BsuRI	GGCC	2 cut(s)	158, 342
BtsCI	GGATG	2 cut(s)	76, 133
Cac8I	GCNNGC	1 cut(s)	237
Cfr13I	GGNCC	3 cut(s)	4, 340, 436
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	4 cut(s)	99, 263, 327, 407
CviAII	CATG	3 cut(s)	133, 418, 430
CviJI	RGCY	4 cut(s)	158, 235, 342, 362
CviKI_1	RGCY	4 cut(s)	158, 235, 342, 362
CviQI	GTAC	4 cut(s)	99, 263, 327, 407
DdeI	CTNAG	3 cut(s)	41, 240, 363
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
EaeI	YGGCCR	1 cut(s)	156
Eco47I	GGWCC	2 cut(s)	4, 436
EcoO109I	RGGNCCY	1 cut(s)	340
EcoRII	CCWGG	1 cut(s)	276
FaeI	CATG	3 cut(s)	136, 421, 433
FaiI	YATR	4 cut(s)	134, 248, 419, 431
FatI	CATG	3 cut(s)	132, 417, 429
Fnu4HI	GCNGC	1 cut(s)	47
FokI	GGATG	2 cut(s)	83, 140
Fsp4HI	GCNGC	1 cut(s)	47
FspBI	CTAG	1 cut(s)	266
GluI	GCNGC	1 cut(s)	47
HaeIII	GGCC	2 cut(s)	158, 342
HgaI	GACGC	1 cut(s)	137
Hin1II	CATG	3 cut(s)	136, 421, 433
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HinfI	GANTC	2 cut(s)	39, 221
HphI	GGTGA	2 cut(s)	128, 403
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	3 cut(s)	153, 243, 315
Hpy188III	TCNNGA	2 cut(s)	62, 105
Hpy8I	GTNNAC	1 cut(s)	24
HpyAV	CCTTC	2 cut(s)	17, 244
HpyCH4III	ACNGT	4 cut(s)	21, 116, 331, 406
HpyCH4V	TGCA	1 cut(s)	355
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 185
HpyF3I	CTNAG	3 cut(s)	41, 240, 363
Hsp92II	CATG	3 cut(s)	136, 421, 433
Kzo9I	GATC	1 cut(s)	204
LpnPI	CCDG	4 cut(s)	28, 197, 263, 290
Lsp1109I	GCAGC	1 cut(s)	58
MaeI	CTAG	1 cut(s)	266
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MfeI	CAATTG	1 cut(s)	350
MflI	RGATCY	1 cut(s)	204
MlsI	TGGCCA	1 cut(s)	158
MluCI	AATT	1 cut(s)	350
MluNI	TGGCCA	1 cut(s)	158
MlyI	GAGTC	1 cut(s)	33
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	6 cut(s)	49, 169, 331, 353, 449, 458
Mox20I	TGGCCA	1 cut(s)	158
MscI	TGGCCA	1 cut(s)	158
MseI	TTAA	1 cut(s)	141
Msp20I	TGGCCA	1 cut(s)	158
MspR9I	CCNGG	1 cut(s)	278
MunI	CAATTG	1 cut(s)	350
Mva1269I	GAATGC	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	2 cut(s)	43, 185
NdeII	GATC	1 cut(s)	204
NlaIII	CATG	3 cut(s)	136, 421, 433
PctI	GAATGC	1 cut(s)	179
PfeI	GAWTC	1 cut(s)	221
PkrI	GCNGC	1 cut(s)	48
PleI	GAGTC	1 cut(s)	33
PpsI	GAGTC	1 cut(s)	33
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspPI	GGNCC	3 cut(s)	4, 340, 436
PsuI	RGATCY	1 cut(s)	204
RsaI	GTAC	4 cut(s)	100, 264, 328, 408
RsaNI	GTAC	4 cut(s)	99, 263, 327, 407
SaqAI	TTAA	1 cut(s)	141
SatI	GCNGC	1 cut(s)	47
Sau3AI	GATC	1 cut(s)	204
Sau96I	GGNCC	3 cut(s)	4, 340, 436
ScaI	AGTACT	1 cut(s)	264
SchI	GAGTC	1 cut(s)	33
ScrFI	CCNGG	1 cut(s)	278
SetI	ASST	4 cut(s)	9, 90, 216, 237
SinI	GGWCC	2 cut(s)	4, 436
SmlI	CTYRAG	2 cut(s)	344, 449
SmoI	CTYRAG	2 cut(s)	344, 449
SpeI	ACTAGT	1 cut(s)	265
Sse9I	AATT	1 cut(s)	350
SspMI	CTAG	1 cut(s)	266
StyD4I	CCNGG	1 cut(s)	276
TaaI	ACNGT	4 cut(s)	21, 116, 331, 406
TaqI	TCGA	1 cut(s)	333
TasI	AATT	1 cut(s)	350
TatI	WGTACW	3 cut(s)	98, 262, 326
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	1 cut(s)	141
Tru9I	TTAA	1 cut(s)	141
TseI	GCWGC	1 cut(s)	46
TspDTI	ATGAA	2 cut(s)	98, 263
VpaK11BI	GGWCC	2 cut(s)	4, 436
XspI	CTAG	1 cut(s)	266
ZrmI	AGTACT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.