pycom04g17470

ABC transporter G family member

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Forward (+)
19847106 .. 19847345
240 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 240 bp
ATGTGTTCCAGATTAACAGCCAGATCGAAATGGATAGACCTGAGTGTGATCTTGAGCATGATTGTCGTGTACCGGATCATCTTCTTCATCATGATCAAGTTCAGCGAGGATGTGATGCCGTGGATTCGAGGTTACATGGCAAGGCGAAGAATACAACAGAAGAATGGAAACCAGAACACAACAGTTGCTCCCGATGGCCCCACACAGTCACCTTCTTTGAGGAACTATGCAAGAAGGTAG

Protein Analysis

80

Amino Acids

9.29

Weight (kDa)

11.2

Isoelectric Point (pI)

70.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 83
AfaI GTAC 1 cut(s) 71
AlwI GGATC 1 cut(s) 83
AoxI GGCC 1 cut(s) 196
AspS9I GGNCC 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 201
BccI CCATC 1 cut(s) 188
BceAI ACGGC 1 cut(s) 103
BcgI CGANNNNNNTGC 2 cut(s) 46, 80
BclI TGATCA 1 cut(s) 93
BmgT120I GGNCC 1 cut(s) 197
BmiI GGNNCC 1 cut(s) 199
BmsI GCATC 1 cut(s) 105
BpuEI CTTGAG 1 cut(s) 73
BsaJI CCNNGG 1 cut(s) 119
BsaWI WCCGGW 1 cut(s) 72
BsaXI ACNNNNNCTCC 2 cut(s) 172, 202
BseDI CCNNGG 1 cut(s) 119
BseGI GGATG 1 cut(s) 115
BseMII CTCAG 1 cut(s) 32
BshFI GGCC 1 cut(s) 198
BsiSI CCGG 1 cut(s) 73
BsnI GGCC 1 cut(s) 198
Bsp143I GATC 4 cut(s) 23, 48, 75, 93
BspANI GGCC 1 cut(s) 198
BspCNI CTCAG 1 cut(s) 33
BspHI TCATGA 1 cut(s) 90
BspLI GGNNCC 1 cut(s) 199
BspPI GGATC 1 cut(s) 83
BssECI CCNNGG 1 cut(s) 119
BssMI GATC 4 cut(s) 23, 48, 75, 93
Bst4CI ACNGT 2 cut(s) 184, 207
BstDEI CTNAG 1 cut(s) 41
BstDSI CCRYGG 1 cut(s) 119
BstF5I GGATG 1 cut(s) 115
BstKTI GATC 4 cut(s) 26, 51, 78, 96
BstMBI GATC 4 cut(s) 23, 48, 75, 93
BsuRI GGCC 1 cut(s) 198
BtgI CCRYGG 1 cut(s) 119
BtsCI GGATG 1 cut(s) 115
CciI TCATGA 1 cut(s) 90
Cfr13I GGNCC 1 cut(s) 197
Csp6I GTAC 1 cut(s) 70
CviAII CATG 3 cut(s) 58, 91, 136
CviJI RGCY 2 cut(s) 20, 198
CviKI_1 RGCY 2 cut(s) 20, 198
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 1 cut(s) 41
DpnI GATC 4 cut(s) 25, 50, 77, 95
DpnII GATC 4 cut(s) 23, 48, 75, 93
FaeI CATG 3 cut(s) 61, 94, 139
FaiI YATR 4 cut(s) 59, 92, 137, 228
FatI CATG 3 cut(s) 57, 90, 135
FbaI TGATCA 1 cut(s) 93
FokI GGATG 1 cut(s) 122
HaeIII GGCC 1 cut(s) 198
HapII CCGG 1 cut(s) 73
Hin1II CATG 3 cut(s) 61, 94, 139
HinfI GANTC 1 cut(s) 124
HpaII CCGG 1 cut(s) 73
HphI GGTGA 1 cut(s) 201
Hpy166II GTNNAC 1 cut(s) 70
Hpy188III TCNNGA 4 cut(s) 9, 52, 91, 191
Hpy8I GTNNAC 1 cut(s) 70
HpyAV CCTTC 2 cut(s) 222, 228
HpyCH4III ACNGT 2 cut(s) 184, 207
HpyCH4V TGCA 1 cut(s) 230
HpyF3I CTNAG 1 cut(s) 41
Hsp92II CATG 3 cut(s) 61, 94, 139
Ksp22I TGATCA 1 cut(s) 93
Kzo9I GATC 4 cut(s) 23, 48, 75, 93
LmnI GCTCC 1 cut(s) 193
LpnPI CCDG 5 cut(s) 22, 34, 53, 86, 185
LweI GCATC 1 cut(s) 105
MaeIII GTNAC 2 cut(s) 131, 207
MalI GATC 4 cut(s) 25, 50, 77, 95
MboI GATC 4 cut(s) 23, 48, 75, 93
MboII GAAGA 4 cut(s) 73, 76, 159, 172
MnlI CCTC 3 cut(s) 100, 122, 213
MseI TTAA 1 cut(s) 14
MspI CCGG 1 cut(s) 73
NdeII GATC 4 cut(s) 23, 48, 75, 93
NlaIII CATG 3 cut(s) 61, 94, 139
NlaIV GGNNCC 1 cut(s) 199
NmuCI GTSAC 1 cut(s) 207
PagI TCATGA 1 cut(s) 90
PfeI GAWTC 1 cut(s) 124
PspN4I GGNNCC 1 cut(s) 199
PspPI GGNCC 1 cut(s) 197
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
SaqAI TTAA 1 cut(s) 14
Sau3AI GATC 4 cut(s) 23, 48, 75, 93
Sau96I GGNCC 1 cut(s) 197
SetI ASST 4 cut(s) 42, 133, 214, 239
SfaNI GCATC 1 cut(s) 105
SmlI CTYRAG 1 cut(s) 52
SmoI CTYRAG 1 cut(s) 52
TaaI ACNGT 2 cut(s) 184, 207
TaqI TCGA 2 cut(s) 26, 127
TfiI GAWTC 1 cut(s) 124
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TseFI GTSAC 1 cut(s) 207
Tsp45I GTSAC 1 cut(s) 207
TspDTI ATGAA 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.