pycom04g17590

Zinc finger MYM-type protein 1-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Forward (+)
19919675 .. 19919941
267 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 267 bp
ATGAAGAGGTATTTTAAGAGAAAAGCAACCGAAGATAACCTCTCACCCTCTATGGATATTCCTGAAAGTTCAAATGAAAATAATATAGAAAGTATATTGGCAAATCTTCCAGGAAATCCTGGGCTTCGACTTCGGATATCGGAATATGATCGATATATTAGATCGATCATATCCAAAGAGCTTATTTACAAAGGGAATTGGTTCAACCTCGAACCCATCAATTTTCATATACATCATTTGCAGGAGTACAACTCCTTTTCAATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

89

Amino Acids

10.43

Weight (kDa)

6.83

Isoelectric Point (pI)

69.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 248
AgsI TTSAA 3 cut(s) 72, 205, 261
AjnI CCWGG 2 cut(s) 109, 118
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
Asp700I GAANNNNTTC 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 36
BccI CCATC 1 cut(s) 224
BciT130I CCWGG 2 cut(s) 111, 120
Bme1390I CCNGG 2 cut(s) 111, 120
BmrFI CCNGG 2 cut(s) 111, 120
BplI GAGNNNNNCTC 1 cut(s) 236
Bsa29I ATCGAT 2 cut(s) 151, 164
BsaJI CCNNGG 1 cut(s) 119
BseBI CCWGG 2 cut(s) 111, 120
BseCI ATCGAT 2 cut(s) 151, 164
BseDI CCNNGG 1 cut(s) 119
BshVI ATCGAT 2 cut(s) 151, 164
Bsp143I GATC 3 cut(s) 148, 161, 165
BspDI ATCGAT 2 cut(s) 151, 164
BssECI CCNNGG 1 cut(s) 119
BssMI GATC 3 cut(s) 148, 161, 165
Bst2UI CCWGG 2 cut(s) 111, 120
BstKTI GATC 3 cut(s) 151, 164, 168
BstMBI GATC 3 cut(s) 148, 161, 165
BstNI CCWGG 2 cut(s) 111, 120
BstSCI CCNGG 2 cut(s) 109, 118
Bsu15I ATCGAT 2 cut(s) 151, 164
BsuTUI ATCGAT 2 cut(s) 151, 164
ClaI ATCGAT 2 cut(s) 151, 164
Csp6I GTAC 1 cut(s) 247
CviJI RGCY 2 cut(s) 124, 181
CviKI_1 RGCY 2 cut(s) 124, 181
CviQI GTAC 1 cut(s) 247
DpnI GATC 3 cut(s) 150, 163, 167
DpnII GATC 3 cut(s) 148, 161, 165
Eco32I GATATC 1 cut(s) 138
EcoRII CCWGG 2 cut(s) 109, 118
EcoRV GATATC 1 cut(s) 138
FaiI YATR 8 cut(s) 53, 86, 95, 147, 156, 170, 228, 230
HphI GGTGA 1 cut(s) 36
Hpy188I TCNGA 3 cut(s) 135, 142, 266
Hpy188III TCNNGA 1 cut(s) 62
HpyCH4V TGCA 1 cut(s) 241
Kzo9I GATC 3 cut(s) 148, 161, 165
LpnPI CCDG 6 cut(s) 75, 96, 105, 123, 132, 227
MalI GATC 3 cut(s) 150, 163, 167
MboI GATC 3 cut(s) 148, 161, 165
MboII GAAGA 3 cut(s) 16, 44, 98
MluCI AATT 2 cut(s) 196, 220
MnlI CCTC 3 cut(s) 50, 58, 218
MroXI GAANNNNTTC 1 cut(s) 200
MseI TTAA 1 cut(s) 15
MspR9I CCNGG 2 cut(s) 111, 120
MvaI CCWGG 2 cut(s) 111, 120
NdeII GATC 3 cut(s) 148, 161, 165
PdmI GAANNNNTTC 1 cut(s) 200
PfoI TCCNGGA 1 cut(s) 109
Psp6I CCWGG 2 cut(s) 109, 118
PspGI CCWGG 2 cut(s) 109, 118
RsaI GTAC 1 cut(s) 248
RsaNI GTAC 1 cut(s) 247
SaqAI TTAA 1 cut(s) 15
Sau3AI GATC 3 cut(s) 148, 161, 165
ScrFI CCNGG 2 cut(s) 111, 120
SetI ASST 4 cut(s) 11, 42, 183, 210
SgeI CNNG 7 cut(s) 74, 122, 123, 131, 132, 221, 254
Sse9I AATT 2 cut(s) 196, 220
StyD4I CCNGG 2 cut(s) 109, 118
TaqI TCGA 4 cut(s) 127, 151, 164, 210
TasI AATT 2 cut(s) 196, 220
TatI WGTACW 1 cut(s) 246
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TspDTI ATGAA 3 cut(s) 17, 90, 215
XmnI GAANNNNTTC 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.