Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

20038791 .. 20039505

Gene Structure 715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g17770.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGGAATTTCGACGTTTCGCATAGCGTGTGTGTACGAAGGTGAAAGAAGCTTGACGAAGGATTGTCGTGAGCTTGGTAAGTTTGATCCCACCGGCATTCCACCTGCTCCAAGTTCCCCAAATCGAGGTGACACAAATGGGATCCTACACGTGAGAGTAGAGGACAGGGGCGTGAAGAAATCTCAATCCATAACCATCACCAACGACAAGGGGCGTCTGAGCCAGGAAGAGATAGAGAGAATGGTGAAGGAGGCTGAGGAGTTTGCCAAAGAGGATAACAAAGTGAGGGAAAAGGTCGATGCCAGGAACAAACTTGAGACCTACATTTACAGCTTGAAGAGCACTGTCAATGACAAGGACAAGCTGGCAGATAAGATTGATTCAGATGACAAGGAGAAGATCGAAAGCACACTGAAGGAAGCGCTCGAGTGGTTGGATGACAACCAAAACGCCGAGCAGGATGATTTCGACGGGAAGCTGAAGGAGGTGGAGGCAGTATGTAACCCGGTGATGAAGCAAGTTTATGAAGAGTGGTGGAAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0000904 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005788 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0012505 GO:0016043 GO:0016049 GO:0016592 GO:0022414 GO:0030154 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032989 GO:0032991 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044432 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044706 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051704 GO:0060560 GO:0070013 GO:0071840

KEGG Pathways

Metabolic & Signaling

ko03060 ko04141 ko04918 ko05020 map03060 map04141 map04918 map05020

Pfam Domains

Protein Families

HSP70

Protein Analysis

182

Amino Acids

20.81

Weight (kDa)

4.9

Isoelectric Point (pI)

32.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	112
Acc36I	ACCTGC	1 cut(s)	112
AclWI	GGATC	3 cut(s)	80, 136, 149
AcsI	RAATTY	1 cut(s)	6
AcuI	CTGAAG	2 cut(s)	434, 500
AcvI	CACGTG	1 cut(s)	151
AcyI	GRCGYC	1 cut(s)	214
AfaI	GTAC	1 cut(s)	35
AfeI	AGCGCT	1 cut(s)	423
AfiI	CCNNNNNNNGG	1 cut(s)	125
AflIII	ACRYGT	1 cut(s)	148
AgsI	TTSAA	1 cut(s)	337
AjnI	CCWGG	2 cut(s)	222, 302
AluBI	AGCT	5 cut(s)	51, 73, 333, 364, 478
AluI	AGCT	5 cut(s)	51, 73, 333, 364, 478
Alw21I	GWGCWC	1 cut(s)	344
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	3 cut(s)	80, 136, 149
Ama87I	CYCGRG	1 cut(s)	425
Aor51HI	AGCGCT	1 cut(s)	423
ApoI	RAATTY	1 cut(s)	6
AspLEI	GCGC	1 cut(s)	424
AsuC2I	CCSGG	1 cut(s)	506
AsuHPI	GGTGA	5 cut(s)	53, 140, 190, 256, 520
AvaI	CYCGRG	1 cut(s)	425
BamHI	GGATCC	1 cut(s)	141
BbrPI	CACGTG	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	344
BbvCI	CCTCAGC	1 cut(s)	255
BccI	CCATC	1 cut(s)	203
BciT130I	CCWGG	2 cut(s)	224, 304
BcnI	CCSGG	1 cut(s)	506
BcoDI	GTCTC	1 cut(s)	311
BfaI	CTAG	1 cut(s)	544
BfoI	RGCGCY	1 cut(s)	425
BfuAI	ACCTGC	1 cut(s)	112
Bme1390I	CCNGG	3 cut(s)	224, 304, 506
BmeT110I	CYCGRG	1 cut(s)	425
BmiI	GGNNCC	1 cut(s)	143
BmrFI	CCNGG	3 cut(s)	224, 304, 506
BmsI	GCATC	1 cut(s)	289
Bpu10I	CCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	1 cut(s)	335
BpuMI	CCSGG	1 cut(s)	506
BsaAI	YACGTR	1 cut(s)	151
BsaHI	GRCGYC	1 cut(s)	214
BsaI	GGTCTC	1 cut(s)	311
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse118I	RCCGGY	1 cut(s)	92
BseBI	CCWGG	2 cut(s)	224, 304
BseGI	GGATG	2 cut(s)	442, 466
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMII	CTCAG	2 cut(s)	209, 246
BseRI	GAGGAG	1 cut(s)	272
BsiHKAI	GWGCWC	1 cut(s)	344
BsiHKCI	CYCGRG	1 cut(s)	425
BsiSI	CCGG	2 cut(s)	93, 506
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	311
BsmI	GAATGC	1 cut(s)	96
Bso31I	GGTCTC	1 cut(s)	311
BsoBI	CYCGRG	1 cut(s)	425
Bsp1286I	GDGCHC	1 cut(s)	344
Bsp143I	GATC	3 cut(s)	85, 141, 399
BspCNI	CTCAG	2 cut(s)	210, 247
BspLI	GGNNCC	1 cut(s)	143
BspMI	ACCTGC	1 cut(s)	112
BspPI	GGATC	3 cut(s)	80, 136, 149
BspQI	GCTCTTC	1 cut(s)	332
BspTNI	GGTCTC	1 cut(s)	311
BsrFI	RCCGGY	1 cut(s)	92
BssAI	RCCGGY	1 cut(s)	92
BssMI	GATC	3 cut(s)	85, 141, 399
BssNI	GRCGYC	1 cut(s)	214
Bst2UI	CCWGG	2 cut(s)	224, 304
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	3 cut(s)	222, 332, 522
BstACI	GRCGYC	1 cut(s)	214
BstBAI	YACGTR	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	2 cut(s)	218, 255
BstF5I	GGATG	2 cut(s)	442, 466
BstH2I	RGCGCY	1 cut(s)	425
BstHHI	GCGC	1 cut(s)	424
BstKTI	GATC	3 cut(s)	88, 144, 402
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	3 cut(s)	85, 141, 399
BstMWI	GCNNNNNNNGC	1 cut(s)	339
BstNI	CCWGG	2 cut(s)	224, 304
BstSCI	CCNGG	3 cut(s)	222, 302, 504
BstX2I	RGATCY	1 cut(s)	141
BstYI	RGATCY	1 cut(s)	141
BtsCI	GGATG	2 cut(s)	442, 466
BtsIMutI	CAGTG	2 cut(s)	342, 410
BveI	ACCTGC	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	366
CfoI	GCGC	1 cut(s)	424
Cfr10I	RCCGGY	1 cut(s)	92
CseI	GACGC	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	34
CviJI	RGCY	7 cut(s)	51, 73, 222, 254, 333, 364, 478
CviKI_1	RGCY	7 cut(s)	51, 73, 222, 254, 333, 364, 478
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	2 cut(s)	218, 255
DpnI	GATC	3 cut(s)	87, 143, 401
DpnII	GATC	3 cut(s)	85, 141, 399
Eam1104I	CTCTTC	3 cut(s)	222, 332, 522
EarI	CTCTTC	3 cut(s)	222, 332, 522
Eco31I	GGTCTC	1 cut(s)	311
Eco47III	AGCGCT	1 cut(s)	423
Eco57I	CTGAAG	2 cut(s)	434, 500
Eco72I	CACGTG	1 cut(s)	151
Eco88I	CYCGRG	1 cut(s)	425
EcoRII	CCWGG	2 cut(s)	222, 302
FaiI	YATR	4 cut(s)	23, 191, 499, 525
FokI	GGATG	2 cut(s)	449, 473
FspBI	CTAG	1 cut(s)	544
GlaI	GCGC	1 cut(s)	423
HaeII	RGCGCY	1 cut(s)	425
HapII	CCGG	2 cut(s)	93, 506
HgaI	GACGC	1 cut(s)	203
HhaI	GCGC	1 cut(s)	424
Hin1I	GRCGYC	1 cut(s)	214
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HindIII	AAGCTT	1 cut(s)	49
HinfI	GANTC	1 cut(s)	380
HpaII	CCGG	2 cut(s)	93, 506
HphI	GGTGA	5 cut(s)	53, 140, 190, 256, 520
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	2 cut(s)	219, 385
Hpy188III	TCNNGA	1 cut(s)	68
Hpy8I	GTNNAC	1 cut(s)	34
Hpy99I	CGWCG	2 cut(s)	16, 473
HpyAV	CCTTC	5 cut(s)	32, 52, 241, 409, 475
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4IV	ACGT	2 cut(s)	14, 150
HpyF10VI	GCNNNNNNNGC	1 cut(s)	339
HpyF3I	CTNAG	2 cut(s)	218, 255
HpySE526I	ACGT	2 cut(s)	14, 150
Hsp92I	GRCGYC	1 cut(s)	214
HspAI	GCGC	1 cut(s)	422
Kzo9I	GATC	3 cut(s)	85, 141, 399
LguI	GCTCTTC	1 cut(s)	332
LmnI	GCTCC	1 cut(s)	112
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	1 cut(s)	544
MaeII	ACGT	2 cut(s)	14, 150
MaeIII	GTNAC	2 cut(s)	128, 500
MalI	GATC	3 cut(s)	87, 143, 401
MboI	GATC	3 cut(s)	85, 141, 399
MboII	GAAGA	5 cut(s)	187, 239, 349, 409, 539
MflI	RGATCY	1 cut(s)	141
MhlI	GDGCHC	1 cut(s)	344
MluCI	AATT	1 cut(s)	6
MmeI	TCCRAC	1 cut(s)	414
MnlI	CCTC	8 cut(s)	119, 154, 244, 250, 265, 279, 478, 484
MspI	CCGG	2 cut(s)	93, 506
MspR9I	CCNGG	3 cut(s)	224, 304, 506
Mva1269I	GAATGC	1 cut(s)	96
MvaI	CCWGG	2 cut(s)	224, 304
MwoI	GCNNNNNNNGC	1 cut(s)	339
NciI	CCSGG	1 cut(s)	506
NdeII	GATC	3 cut(s)	85, 141, 399
NlaIV	GGNNCC	1 cut(s)	143
NmeAIII	GCCGAG	1 cut(s)	478
NmuCI	GTSAC	1 cut(s)	128
PaeR7I	CTCGAG	1 cut(s)	425
PaqCI	CACCTGC	1 cut(s)	112
PciSI	GCTCTTC	1 cut(s)	332
PctI	GAATGC	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	380
PmaCI	CACGTG	1 cut(s)	151
PmlI	CACGTG	1 cut(s)	151
Ppu21I	YACGTR	1 cut(s)	151
Psp6I	CCWGG	2 cut(s)	222, 302
PspCI	CACGTG	1 cut(s)	151
PspGI	CCWGG	2 cut(s)	222, 302
PspN4I	GGNNCC	1 cut(s)	143
PspXI	VCTCGAGB	1 cut(s)	425
PsuI	RGATCY	1 cut(s)	141
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SapI	GCTCTTC	1 cut(s)	332
Sau3AI	GATC	3 cut(s)	85, 141, 399
ScrFI	CCNGG	3 cut(s)	224, 304, 506
SduI	GDGCHC	1 cut(s)	344
SfaNI	GCATC	1 cut(s)	289
Sfr274I	CTCGAG	1 cut(s)	425
SlaI	CTCGAG	1 cut(s)	425
SmlI	CTYRAG	2 cut(s)	314, 425
SmoI	CTYRAG	2 cut(s)	314, 425
Sse9I	AATT	1 cut(s)	6
SspMI	CTAG	1 cut(s)	544
StyD4I	CCNGG	3 cut(s)	222, 302, 504
TaaI	ACNGT	1 cut(s)	346
TaiI	ACGT	2 cut(s)	17, 153
TaqI	TCGA	6 cut(s)	11, 124, 297, 402, 426, 468
TasI	AATT	1 cut(s)	6
TfiI	GAWTC	1 cut(s)	380
TscAI	CASTG	2 cut(s)	349, 417
TseFI	GTSAC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	2 cut(s)	527, 540
TspRI	CASTG	2 cut(s)	349, 417
XapI	RAATTY	1 cut(s)	6
XhoI	CTCGAG	1 cut(s)	425
XspI	CTAG	1 cut(s)	544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.