Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

20102805 .. 20104101

Gene Structure 1297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGGTTATATGGAGAGGGATTCGGGAGACAGCAGATGAGAAATTAAAGGATGAGAACAGAAGGGTGAAGGCCATAAATTGCTTTGACTGGTCTGAGGTTGATATTGAACTTAGTCAATTCATGAAAGGTTACTCCGAGGGAAGAATTAATGAAAATGGTATGCCAGAAATGTTGAAACTCATAGATTGGCCTTCCCCTAGTGCATCTGAAGAATTCTTATTATATCAGAGACCTCAATTTATCAGCAAACTGCCTTTACTTGAGTATATTCACTCCAAGTTTGGTCTTTTAAATGTTGCTGCAAAACTGCCACACTATTCTTTGCAAAACGAGGTTGGACCTAAGATTTTTATTTCTTATGGGACCTATGAGGAGCTTGGTAGACACAACTCCGTAATCAATCTCCATTTCAACATGCATGACATGGCTAGTTGCTTCTCCGTTCTTGGGAGAGTAATGCTTTTATGCTGTGCAATTTTCAATGATCATTCAGGGAAAAACATTTTTGGTACGATGATTTGGAATGTGGGGATCTACAAATGGTTACGGGAGAGGATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03010 ko04714 map03010 map04714

Pfam Domains

Protein Families

JmjC WRC zf-4CXXC_R1

Protein Analysis

187

Amino Acids

21.68

Weight (kDa)

6.59

Isoelectric Point (pI)

40.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	382
AclWI	GGATC	1 cut(s)	539
AcsI	RAATTY	1 cut(s)	212
AcuI	CTGAAG	1 cut(s)	228
AfaI	GTAC	1 cut(s)	511
AfiI	CCNNNNNNNGG	1 cut(s)	447
AgsI	TTSAA	4 cut(s)	107, 175, 412, 481
AluBI	AGCT	1 cut(s)	376
AluI	AGCT	1 cut(s)	376
Alw26I	GTCTC	2 cut(s)	20, 223
AlwI	GGATC	1 cut(s)	539
AoxI	GGCC	2 cut(s)	69, 188
ApeKI	GCWGC	1 cut(s)	299
ApoI	RAATTY	1 cut(s)	212
AseI	ATTAAT	1 cut(s)	147
AspS9I	GGNCC	2 cut(s)	338, 363
AsuHPI	GGTGA	1 cut(s)	76
AvaII	GGWCC	2 cut(s)	338, 363
BbvI	GCAGC	1 cut(s)	286
BclI	TGATCA	1 cut(s)	484
BcoDI	GTCTC	2 cut(s)	20, 223
BfaI	CTAG	2 cut(s)	198, 429
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
Bme18I	GGWCC	2 cut(s)	338, 363
BmgT120I	GGNCC	2 cut(s)	338, 363
BmiI	GGNNCC	1 cut(s)	364
BmsI	GCATC	1 cut(s)	212
BpuEI	CTTGAG	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	223
BsaJI	CCNNGG	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	1 cut(s)	447
Bse1I	ACTGG	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	1 cut(s)	447
BseMII	CTCAG	1 cut(s)	84
BseNI	ACTGG	1 cut(s)	92
BseRI	GAGGAG	1 cut(s)	386
BseXI	GCAGC	1 cut(s)	286
BshFI	GGCC	2 cut(s)	71, 190
BslFI	GGGAC	1 cut(s)	376
BslI	CCNNNNNNNGG	1 cut(s)	447
BsmAI	GTCTC	2 cut(s)	20, 223
BsmFI	GGGAC	1 cut(s)	376
BsnI	GGCC	2 cut(s)	71, 190
Bso31I	GGTCTC	1 cut(s)	223
Bsp143I	GATC	2 cut(s)	484, 531
BspANI	GGCC	2 cut(s)	71, 190
BspCNI	CTCAG	1 cut(s)	85
BspHI	TCATGA	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	364
BspPI	GGATC	1 cut(s)	539
BspTNI	GGTCTC	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	92
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	2 cut(s)	484, 531
BstDEI	CTNAG	3 cut(s)	93, 110, 342
BstF5I	GGATG	1 cut(s)	55
BstKTI	GATC	2 cut(s)	487, 534
BstMAI	GTCTC	2 cut(s)	20, 223
BstMBI	GATC	2 cut(s)	484, 531
BstNSI	RCATGY	1 cut(s)	418
BstV1I	GCAGC	1 cut(s)	286
BstX2I	RGATCY	1 cut(s)	531
BstYI	RGATCY	1 cut(s)	531
BsuRI	GGCC	2 cut(s)	71, 190
BtsCI	GGATG	1 cut(s)	55
CciI	TCATGA	1 cut(s)	120
Cfr13I	GGNCC	2 cut(s)	338, 363
Csp6I	GTAC	1 cut(s)	510
CviAII	CATG	4 cut(s)	121, 415, 419, 424
CviJI	RGCY	4 cut(s)	71, 190, 376, 428
CviKI_1	RGCY	4 cut(s)	71, 190, 376, 428
CviQI	GTAC	1 cut(s)	510
DdeI	CTNAG	3 cut(s)	93, 110, 342
DpnI	GATC	2 cut(s)	486, 533
DpnII	GATC	2 cut(s)	484, 531
DraI	TTTAAA	1 cut(s)	291
Eco31I	GGTCTC	1 cut(s)	223
Eco47I	GGWCC	2 cut(s)	338, 363
Eco57I	CTGAAG	1 cut(s)	228
EcoO109I	RGGNCCY	1 cut(s)	363
EcoRI	GAATTC	1 cut(s)	212
EcoT22I	ATGCAT	1 cut(s)	420
FaeI	CATG	4 cut(s)	124, 418, 422, 427
FaqI	GGGAC	1 cut(s)	376
FatI	CATG	4 cut(s)	120, 414, 418, 423
FbaI	TGATCA	1 cut(s)	484
FblI	GTMKAC	1 cut(s)	382
Fnu4HI	GCNGC	1 cut(s)	300
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	300
FspBI	CTAG	2 cut(s)	198, 429
GluI	GCNGC	1 cut(s)	300
HaeIII	GGCC	2 cut(s)	71, 190
Hin1II	CATG	4 cut(s)	124, 418, 422, 427
HinfI	GANTC	1 cut(s)	19
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	383
Hpy188I	TCNGA	4 cut(s)	94, 136, 208, 228
Hpy188III	TCNNGA	2 cut(s)	23, 121
Hpy8I	GTNNAC	1 cut(s)	383
HpyAV	CCTTC	3 cut(s)	54, 61, 201
HpyCH4V	TGCA	5 cut(s)	203, 302, 325, 418, 473
HpyF3I	CTNAG	3 cut(s)	93, 110, 342
Hsp92II	CATG	4 cut(s)	124, 418, 422, 427
Ksp22I	TGATCA	1 cut(s)	484
Kzo9I	GATC	2 cut(s)	484, 531
LmnI	GCTCC	1 cut(s)	373
LpnPI	CCDG	3 cut(s)	73, 177, 477
Lsp1109I	GCAGC	1 cut(s)	286
LweI	GCATC	1 cut(s)	212
MaeI	CTAG	2 cut(s)	198, 429
MaeIII	GTNAC	2 cut(s)	128, 543
MalI	GATC	2 cut(s)	486, 533
MboI	GATC	2 cut(s)	484, 531
MboII	GAAGA	2 cut(s)	153, 221
MflI	RGATCY	1 cut(s)	531
MluCI	AATT	7 cut(s)	41, 76, 116, 144, 212, 236, 474
MmeI	TCCRAC	1 cut(s)	316
MnlI	CCTC	7 cut(s)	8, 88, 130, 243, 325, 364, 546
Mph1103I	ATGCAT	1 cut(s)	420
MseI	TTAA	3 cut(s)	44, 147, 290
NdeII	GATC	2 cut(s)	484, 531
NlaIII	CATG	4 cut(s)	124, 418, 422, 427
NlaIV	GGNNCC	1 cut(s)	364
NsiI	ATGCAT	1 cut(s)	420
NspI	RCATGY	1 cut(s)	418
PagI	TCATGA	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	19
PkrI	GCNGC	1 cut(s)	301
PpuMI	RGGWCCY	1 cut(s)	363
PshBI	ATTAAT	1 cut(s)	147
Psp5II	RGGWCCY	1 cut(s)	363
PspN4I	GGNNCC	1 cut(s)	364
PspPI	GGNCC	2 cut(s)	338, 363
PspPPI	RGGWCCY	1 cut(s)	363
PsuI	RGATCY	1 cut(s)	531
RsaI	GTAC	1 cut(s)	511
RsaNI	GTAC	1 cut(s)	510
SaqAI	TTAA	3 cut(s)	44, 147, 290
SatI	GCNGC	1 cut(s)	300
Sau3AI	GATC	2 cut(s)	484, 531
Sau96I	GGNCC	2 cut(s)	338, 363
SetI	ASST	7 cut(s)	99, 130, 235, 336, 343, 368, 378
SfaNI	GCATC	1 cut(s)	212
SinI	GGWCC	2 cut(s)	338, 363
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	7 cut(s)	41, 76, 116, 144, 212, 236, 474
SspMI	CTAG	2 cut(s)	198, 429
TasI	AATT	7 cut(s)	41, 76, 116, 144, 212, 236, 474
TfiI	GAWTC	1 cut(s)	19
Tru1I	TTAA	3 cut(s)	44, 147, 290
Tru9I	TTAA	3 cut(s)	44, 147, 290
TseI	GCWGC	1 cut(s)	299
TspDTI	ATGAA	3 cut(s)	109, 137, 165
TspGWI	ACGGA	2 cut(s)	382, 430
VpaK11BI	GGWCC	2 cut(s)	338, 363
VspI	ATTAAT	1 cut(s)	147
XapI	RAATTY	1 cut(s)	212
XceI	RCATGY	1 cut(s)	418
XmiI	GTMKAC	1 cut(s)	382
XspI	CTAG	2 cut(s)	198, 429
Zsp2I	ATGCAT	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.