pycom04g18360

Trafficking protein particle complex subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Reverse (-)
20403863 .. 20405331
1469 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 444 bp
ATGTCGCTCGGCCCTTCCGAAAATGGAGAATTGTCTCAAGAAAATGCTGAGGCGGCCGAAAACAAGTCAGCAGAAGAACCAAACATGCATCTCCATTTGTCATGTGGAGTCATAAAGGGTGCTCTTCATAACTTGGGGATTGCTTGTGCTGTTTCTGCCGACACGTCCCACCTTCCTGCGTGTTCATTCGTGGTTCGTATAAAAGCCCCGATGGACGCTCCTACAAGGAACTTTCAGAAAAAAGTTGGGGTTTGCTTCATCGGCCTATTGAGATTTGTAATCTTTCTCGTTTTCTCTTGTGTACAAGAATTTTTACTTCGATTTCAGAATTTAGTTGTAACCTTCAAACTGAGAAGATTCATCTCGGAGAAATCACAAGATTGTACTTACCGGTGTTGTGAGGGTGAGGAGAATGTTGAGAAACATAAATTGTATTTATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

148

Amino Acids

16.4

Weight (kDa)

6.94

Isoelectric Point (pI)

51.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TRAPP PF04051 22 - 68 2.3e-06 Transport protein particle (TRAPP) component
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 53
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 2 cut(s) 308, 328
AfaI GTAC 2 cut(s) 303, 385
AflIII ACRYGT 1 cut(s) 162
AgeI ACCGGT 1 cut(s) 390
AgsI TTSAA 1 cut(s) 346
AjiI CACGTC 1 cut(s) 165
Alw21I GWGCWC 1 cut(s) 124
Alw26I GTCTC 1 cut(s) 39
AoxI GGCC 3 cut(s) 10, 54, 262
ApoI RAATTY 2 cut(s) 308, 328
AsiGI ACCGGT 1 cut(s) 390
AspS9I GGNCC 1 cut(s) 11
AsuHPI GGTGA 1 cut(s) 416
Bbv12I GWGCWC 1 cut(s) 124
BbvCI CCTCAGC 1 cut(s) 48
BccI CCATC 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 39
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmgBI CACGTC 1 cut(s) 165
BmgT120I GGNCC 1 cut(s) 11
BmsI GCATC 1 cut(s) 97
Bpu10I CCTNAGC 1 cut(s) 48
BpuEI CTTGAG 1 cut(s) 21
BsaWI WCCGGW 1 cut(s) 390
Bse118I RCCGGY 1 cut(s) 390
BseMII CTCAG 2 cut(s) 39, 341
BseRI GAGGAG 1 cut(s) 422
BseX3I CGGCCG 1 cut(s) 54
Bsh1285I CGRYCG 1 cut(s) 57
BshFI GGCC 3 cut(s) 12, 56, 264
BshTI ACCGGT 1 cut(s) 390
BsiEI CGRYCG 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 124
BsiSI CCGG 1 cut(s) 391
BslFI GGGAC 1 cut(s) 151
BsmAI GTCTC 1 cut(s) 39
BsmFI GGGAC 1 cut(s) 151
BsnI GGCC 3 cut(s) 12, 56, 264
Bsp1286I GDGCHC 1 cut(s) 124
Bsp1407I TGTACA 1 cut(s) 301
BspACI CCGC 1 cut(s) 53
BspANI GGCC 3 cut(s) 12, 56, 264
BspCNI CTCAG 2 cut(s) 40, 342
BspQI GCTCTTC 1 cut(s) 129
BsrFI RCCGGY 1 cut(s) 390
BsrGI TGTACA 1 cut(s) 301
BssAI RCCGGY 1 cut(s) 390
Bst6I CTCTTC 1 cut(s) 129
BstAUI TGTACA 1 cut(s) 301
BstDEI CTNAG 2 cut(s) 48, 350
BstMAI GTCTC 1 cut(s) 39
BstMCI CGRYCG 1 cut(s) 57
BstMWI GCNNNNNNNGC 3 cut(s) 53, 155, 261
BstNSI RCATGY 1 cut(s) 88
BstZI CGGCCG 1 cut(s) 54
BsuRI GGCC 3 cut(s) 12, 56, 264
BtrI CACGTC 1 cut(s) 165
Cfr10I RCCGGY 1 cut(s) 390
Cfr13I GGNCC 1 cut(s) 11
CseI GACGC 1 cut(s) 224
Csp6I GTAC 2 cut(s) 302, 384
CspAI ACCGGT 1 cut(s) 390
CviAII CATG 2 cut(s) 85, 102
CviJI RGCY 4 cut(s) 12, 56, 206, 264
CviKI_1 RGCY 4 cut(s) 12, 56, 206, 264
CviQI GTAC 2 cut(s) 302, 384
DdeI CTNAG 2 cut(s) 48, 350
EaeI YGGCCR 1 cut(s) 54
EagI CGGCCG 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
EclXI CGGCCG 1 cut(s) 54
Eco52I CGGCCG 1 cut(s) 54
EcoT22I ATGCAT 1 cut(s) 90
FaeI CATG 2 cut(s) 88, 105
FaiI YATR 6 cut(s) 86, 103, 113, 129, 200, 426
FaqI GGGAC 1 cut(s) 151
FatI CATG 2 cut(s) 84, 101
Fnu4HI GCNGC 1 cut(s) 54
Fsp4HI GCNGC 1 cut(s) 54
GluI GCNGC 1 cut(s) 54
HaeIII GGCC 3 cut(s) 12, 56, 264
HapII CCGG 1 cut(s) 391
HgaI GACGC 1 cut(s) 224
Hin1II CATG 2 cut(s) 88, 105
HinfI GANTC 2 cut(s) 108, 357
HpaII CCGG 1 cut(s) 391
HphI GGTGA 1 cut(s) 416
Hpy166II GTNNAC 1 cut(s) 302
Hpy188I TCNGA 4 cut(s) 19, 237, 327, 367
Hpy188III TCNNGA 2 cut(s) 38, 441
Hpy8I GTNNAC 1 cut(s) 302
HpyAV CCTTC 3 cut(s) 24, 182, 352
HpyCH4IV ACGT 1 cut(s) 164
HpyCH4V TGCA 1 cut(s) 88
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 155, 261
HpyF3I CTNAG 2 cut(s) 48, 350
HpySE526I ACGT 1 cut(s) 164
Hsp92II CATG 2 cut(s) 88, 105
LguI GCTCTTC 1 cut(s) 129
LmnI GCTCC 1 cut(s) 223
LpnPI CCDG 2 cut(s) 189, 404
LweI GCATC 1 cut(s) 97
MaeII ACGT 1 cut(s) 164
MaeIII GTNAC 1 cut(s) 337
MboII GAAGA 3 cut(s) 86, 116, 366
MhlI GDGCHC 1 cut(s) 124
MluCI AATT 4 cut(s) 29, 308, 328, 428
MlyI GAGTC 1 cut(s) 117
MnlI CCTC 3 cut(s) 43, 394, 400
Mph1103I ATGCAT 1 cut(s) 90
MspI CCGG 1 cut(s) 391
MwoI GCNNNNNNNGC 3 cut(s) 53, 155, 261
NlaIII CATG 2 cut(s) 88, 105
NsiI ATGCAT 1 cut(s) 90
NspI RCATGY 1 cut(s) 88
PciSI GCTCTTC 1 cut(s) 129
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PfeI GAWTC 1 cut(s) 357
PinAI ACCGGT 1 cut(s) 390
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 1 cut(s) 116
PpsI GAGTC 1 cut(s) 116
PspPI GGNCC 1 cut(s) 11
RsaI GTAC 2 cut(s) 303, 385
RsaNI GTAC 2 cut(s) 302, 384
SapI GCTCTTC 1 cut(s) 129
SatI GCNGC 1 cut(s) 54
Sau96I GGNCC 1 cut(s) 11
SchI GAGTC 1 cut(s) 117
SduI GDGCHC 1 cut(s) 124
SetI ASST 3 cut(s) 167, 174, 344
SfaNI GCATC 1 cut(s) 97
SmlI CTYRAG 1 cut(s) 36
SmoI CTYRAG 1 cut(s) 36
Sse9I AATT 4 cut(s) 29, 308, 328, 428
SsiI CCGC 1 cut(s) 53
TaiI ACGT 1 cut(s) 167
TaqI TCGA 1 cut(s) 319
TasI AATT 4 cut(s) 29, 308, 328, 428
TatI WGTACW 2 cut(s) 301, 383
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 1 cut(s) 357
TspDTI ATGAA 4 cut(s) 116, 174, 247, 349
XapI RAATTY 2 cut(s) 308, 328
XceI RCATGY 1 cut(s) 88
XcmI CCANNNNNNNNNTGG 1 cut(s) 101
Zsp2I ATGCAT 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.