pycom04g18400

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Reverse (-)
20422605 .. 20423906
1302 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1302 bp
ATGGAAGGTCCAAGAAACTCGAGTTCGAGAAAGCGGAAAACGAGAGAGATGTCGAGAGGACAAGTCGTGCTTGCTCTCCCTGCTCCCAGTGTCCCTCTTCCGCCGCATCTCAGCACCACCGCCACCAAAATGGCAGGCAGTAGAGAGAAGCCGAAAGAAGTAGTGCTTGCTCACTCTGCTCCCAACGCCCCTCCACCACCGCTCCACACCACCACCAAAAGGGCAGGCACGAGAGAGAAACCAATAGTAGTGATTGATCATTGCGCTCTCAATGCATCTCCATCGCTACTCCACACCACCGCCACCAAAAGAGCAGGCATGAGAAAGAAGGCGAAAGAAGTAGCACTCGCTCTCTCCCCTGCCAATGCCCCTCCCCCGCTTCTTAAGTTCATGACGGCACGAAAAGTGACTGCACCCTTCGACCCAGACCACCACCCTCAAACCCCGCCAGTCTCGGCCAAAAGAGAACATGAAGAGGGAGCAGCGGCGCCGGCACTACAAGAAGCTGAAAAAAAGAAGCCGAGGTTGAAAGTGGTTGGCGTAAGAAGTAGCACTTGCTCTCTCCACACAACCGCCACCAAAAGGGCAGGTACGAGAAAGAAGGCGAAAGAAGTAGCACTTGTTCTCTCCCCTCCCATTGCCCCTCCACCACCGCTCAACATAACGACTGCACCAAAAGTGACTACAGCCTTCGACCCAGACCACCACCCTCAAACCCTACCGGTCTCGGCCAGAAGAGAACAAGAAGAGGGAGAAGAGGCGCCGGCACTACAAGAACCTGAAAAAAAGAAGCCGAAGTTGAAGGTGGTTGGCGTTCCTTTTTTGGACCCGGATGCTACGGAATCTTCCAGTGATGATGATTATACTCCACCAATTACTAATGGTCGTAAACGAAAAGAAGTTGAGATCGTTTACGAGATAAAATTACTGAGGAAAAACCCTATTTCAAAAACAAGAAGGAAGATAATAAAAGATCAGAAAAATGAGAAAGAACTTGTTGGTGAGAAGATCGTCATTAAGAAAGAAATTGGCTCGTCTTCTTGTGGTGAAAAGGTAAAAGAATCGTCGTCGACTTCATCAACGGCGGGTAAAAAGAAGACTACGACCAAGGGGAAGAATAAAACGGAGACGAAGAAGAAGAAGAAGACGACGGAGGTTGTTGATGTTTTGTGGGAAATTCCAGGGGAGATTCCCGACCTGGATTTACTGGAAAGAGAGAAAGATTGGCTTTTGTATAGGTTCTTTGACGGAGTTCCCGAATACTGTGAGGACATTCCGCCGGAGGTGAAGGTGATTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

434

Amino Acids

47.6

Weight (kDa)

9.76

Isoelectric Point (pI)

51.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 578
AccB1I GGYRCC 2 cut(s) 487, 760
AccBSI CCGCTC 2 cut(s) 202, 655
AccI GTMKAC 1 cut(s) 1070
AcoI YGGCCR 2 cut(s) 456, 729
AcsI RAATTY 1 cut(s) 1176
AcyI GRCGYC 2 cut(s) 488, 761
AfaI GTAC 1 cut(s) 592
AfiI CCNNNNNNNGG 2 cut(s) 219, 582
AflII CTTAAG 1 cut(s) 383
AgeI ACCGGT 1 cut(s) 721
AgsI TTSAA 3 cut(s) 529, 802, 948
AjnI CCWGG 2 cut(s) 1180, 1197
AluBI AGCT 1 cut(s) 506
AluI AGCT 1 cut(s) 506
Alw26I GTCTC 3 cut(s) 457, 730, 1121
Ama87I CYCGRG 1 cut(s) 19
AoxI GGCC 2 cut(s) 456, 729
ApeKI GCWGC 1 cut(s) 482
ApoI RAATTY 1 cut(s) 1176
AsiGI ACCGGT 1 cut(s) 721
AspLEI GCGC 3 cut(s) 266, 490, 763
AspS9I GGNCC 2 cut(s) 8, 826
AsuC2I CCSGG 1 cut(s) 830
AsuHPI GGTGA 3 cut(s) 1013, 1058, 1297
AvaI CYCGRG 1 cut(s) 19
AvaII GGWCC 2 cut(s) 8, 826
BanI GGYRCC 2 cut(s) 487, 760
BauI CACGAG 1 cut(s) 229
BbsI GAAGAC 3 cut(s) 1029, 1103, 1151
BbvI GCAGC 1 cut(s) 494
BccI CCATC 1 cut(s) 289
BceAI ACGGC 2 cut(s) 411, 1098
BcgI CGANNNNNNTGC 2 cut(s) 264, 298
BciT130I CCWGG 2 cut(s) 1182, 1199
BclI TGATCA 1 cut(s) 256
BcnI CCSGG 1 cut(s) 830
BcoDI GTCTC 3 cut(s) 457, 730, 1121
BfmI CTRYAG 1 cut(s) 684
BfoI RGCGCY 2 cut(s) 491, 764
BfrI CTTAAG 1 cut(s) 383
BfuAI ACCTGC 1 cut(s) 578
BisI GCNGC 3 cut(s) 104, 483, 486
BlsI GCNGC 3 cut(s) 105, 484, 487
Bme1390I CCNGG 3 cut(s) 830, 1182, 1199
Bme18I GGWCC 2 cut(s) 8, 826
BmeT110I CYCGRG 1 cut(s) 19
BmgT120I GGNCC 2 cut(s) 8, 826
BmiI GGNNCC 3 cut(s) 489, 762, 828
BmrFI CCNGG 3 cut(s) 830, 1182, 1199
BmrI ACTGGG 1 cut(s) 81
BmsI GCATC 3 cut(s) 115, 284, 823
BmuI ACTGGG 1 cut(s) 81
BpiI GAAGAC 3 cut(s) 1029, 1103, 1151
BpuMI CCSGG 1 cut(s) 830
BsaHI GRCGYC 2 cut(s) 488, 761
BsaI GGTCTC 1 cut(s) 730
BsaJI CCNNGG 3 cut(s) 521, 1107, 1181
BsaWI WCCGGW 1 cut(s) 721
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bsc4I CCNNNNNNNGG 2 cut(s) 219, 582
Bse118I RCCGGY 3 cut(s) 490, 721, 763
Bse1I ACTGG 4 cut(s) 87, 449, 849, 1212
Bse3DI GCAATG 2 cut(s) 259, 636
BseBI CCWGG 2 cut(s) 1182, 1199
BseDI CCNNGG 3 cut(s) 521, 1107, 1181
BseGI GGATG 1 cut(s) 838
BseLI CCNNNNNNNGG 2 cut(s) 219, 582
BseMI GCAATG 2 cut(s) 259, 636
BseMII CTCAG 2 cut(s) 124, 920
BseNI ACTGG 4 cut(s) 87, 449, 849, 1212
BseXI GCAGC 1 cut(s) 494
BsgI GTGCAG 2 cut(s) 396, 654
BshFI GGCC 2 cut(s) 458, 731
BshNI GGYRCC 2 cut(s) 487, 760
BshTI ACCGGT 1 cut(s) 721
BsiHKCI CYCGRG 1 cut(s) 19
BsiSI CCGG 5 cut(s) 491, 722, 764, 830, 1280
BslFI GGGAC 1 cut(s) 77
BslI CCNNNNNNNGG 2 cut(s) 219, 582
BsmAI GTCTC 3 cut(s) 457, 730, 1121
BsmBI CGTCTC 1 cut(s) 1121
BsmFI GGGAC 1 cut(s) 77
BsnI GGCC 2 cut(s) 458, 731
Bso31I GGTCTC 1 cut(s) 730
BsoBI CYCGRG 1 cut(s) 19
Bsp143I GATC 4 cut(s) 256, 906, 973, 1008
BspANI GGCC 2 cut(s) 458, 731
BspCNI CTCAG 2 cut(s) 123, 921
BspHI TCATGA 1 cut(s) 390
BspLI GGNNCC 3 cut(s) 489, 762, 828
BspMI ACCTGC 1 cut(s) 578
BspT107I GGYRCC 2 cut(s) 487, 760
BspTI CTTAAG 1 cut(s) 383
BspTNI GGTCTC 1 cut(s) 730
BsrBI CCGCTC 2 cut(s) 202, 655
BsrDI GCAATG 2 cut(s) 259, 636
BsrFI RCCGGY 3 cut(s) 490, 721, 763
BsrI ACTGG 4 cut(s) 87, 449, 849, 1212
BssAI RCCGGY 3 cut(s) 490, 721, 763
BssECI CCNNGG 3 cut(s) 521, 1107, 1181
BssMI GATC 4 cut(s) 256, 906, 973, 1008
BssNI GRCGYC 2 cut(s) 488, 761
BssSI CACGAG 1 cut(s) 229
BssT1I CCWWGG 1 cut(s) 1107
Bst2BI CACGAG 1 cut(s) 229
Bst2UI CCWGG 2 cut(s) 1182, 1199
Bst4CI ACNGT 1 cut(s) 1265
Bst6I CTCTTC 5 cut(s) 102, 468, 730, 741, 750
BstACI GRCGYC 2 cut(s) 488, 761
BstAFI CTTAAG 1 cut(s) 383
BstC8I GCNNGC 7 cut(s) 72, 136, 168, 226, 316, 492, 765
BstDEI CTNAG 2 cut(s) 110, 929
BstF5I GGATG 1 cut(s) 838
BstH2I RGCGCY 2 cut(s) 491, 764
BstHHI GCGC 3 cut(s) 266, 490, 763
BstKTI GATC 4 cut(s) 259, 909, 976, 1011
BstMAI GTCTC 3 cut(s) 457, 730, 1121
BstMBI GATC 4 cut(s) 256, 906, 973, 1008
BstMWI GCNNNNNNNGC 5 cut(s) 80, 176, 185, 272, 491
BstNI CCWGG 2 cut(s) 1182, 1199
BstSCI CCNGG 3 cut(s) 828, 1180, 1197
BstSFI CTRYAG 1 cut(s) 684
BstV1I GCAGC 1 cut(s) 494
BstV2I GAAGAC 3 cut(s) 1029, 1103, 1151
BstXI CCANNNNNNTGG 1 cut(s) 130
BsuRI GGCC 2 cut(s) 458, 731
BtgZI GCGATG 1 cut(s) 267
BtsCI GGATG 1 cut(s) 838
BtsIMutI CAGTG 2 cut(s) 94, 856
BveI ACCTGC 1 cut(s) 578
Cac8I GCNNGC 7 cut(s) 72, 136, 168, 226, 316, 492, 765
CciI TCATGA 1 cut(s) 390
CfoI GCGC 3 cut(s) 266, 490, 763
Cfr10I RCCGGY 3 cut(s) 490, 721, 763
Cfr13I GGNCC 2 cut(s) 8, 826
Csp6I GTAC 1 cut(s) 591
CspAI ACCGGT 1 cut(s) 721
CviAII CATG 3 cut(s) 319, 391, 470
CviJI RGCY 9 cut(s) 151, 458, 506, 520, 689, 731, 793, 1032, 1228
CviKI_1 RGCY 9 cut(s) 151, 458, 506, 520, 689, 731, 793, 1032, 1228
CviQI GTAC 1 cut(s) 591
DdeI CTNAG 2 cut(s) 110, 929
DinI GGCGCC 2 cut(s) 489, 762
DpnI GATC 4 cut(s) 258, 908, 975, 1010
DpnII GATC 4 cut(s) 256, 906, 973, 1008
EaeI YGGCCR 2 cut(s) 456, 729
Eam1104I CTCTTC 5 cut(s) 102, 468, 730, 741, 750
EarI CTCTTC 5 cut(s) 102, 468, 730, 741, 750
EciI GGCGGA 2 cut(s) 90, 1266
Eco130I CCWWGG 1 cut(s) 1107
Eco31I GGTCTC 1 cut(s) 730
Eco47I GGWCC 2 cut(s) 8, 826
Eco88I CYCGRG 1 cut(s) 19
EcoRII CCWGG 2 cut(s) 1180, 1197
EcoT14I CCWWGG 1 cut(s) 1107
EcoT22I ATGCAT 1 cut(s) 277
EgeI GGCGCC 2 cut(s) 489, 762
EheI GGCGCC 2 cut(s) 489, 762
ErhI CCWWGG 1 cut(s) 1107
Esp3I CGTCTC 1 cut(s) 1121
FaeI CATG 3 cut(s) 322, 394, 473
FaiI YATR 6 cut(s) 320, 392, 471, 662, 864, 1236
FaqI GGGAC 1 cut(s) 77
FatI CATG 3 cut(s) 318, 390, 469
FauI CCCGC 3 cut(s) 384, 453, 1078
FbaI TGATCA 1 cut(s) 256
FblI GTMKAC 1 cut(s) 1070
Fnu4HI GCNGC 3 cut(s) 104, 483, 486
FokI GGATG 1 cut(s) 845
Fsp4HI GCNGC 3 cut(s) 104, 483, 486
GlaI GCGC 3 cut(s) 265, 489, 762
GluI GCNGC 3 cut(s) 104, 483, 486
HaeII RGCGCY 2 cut(s) 491, 764
HaeIII GGCC 2 cut(s) 458, 731
HapII CCGG 5 cut(s) 491, 722, 764, 830, 1280
HhaI GCGC 3 cut(s) 266, 490, 763
Hin1I GRCGYC 2 cut(s) 488, 761
Hin1II CATG 3 cut(s) 322, 394, 473
Hin6I GCGC 3 cut(s) 264, 488, 761
HinP1I GCGC 3 cut(s) 264, 488, 761
HincII GTYRAC 1 cut(s) 1071
HindII GTYRAC 1 cut(s) 1071
HinfI GANTC 3 cut(s) 842, 1061, 1189
HpaII CCGG 5 cut(s) 491, 722, 764, 830, 1280
HphI GGTGA 3 cut(s) 1013, 1058, 1297
Hpy166II GTNNAC 3 cut(s) 890, 913, 1071
Hpy188I TCNGA 1 cut(s) 978
Hpy188III TCNNGA 5 cut(s) 27, 54, 391, 1193, 1256
Hpy8I GTNNAC 3 cut(s) 890, 913, 1071
Hpy99I CGWCG 3 cut(s) 1069, 1072, 1153
HpyAV CCTTC 7 cut(s) 322, 427, 595, 700, 796, 951, 1282
HpyCH4III ACNGT 1 cut(s) 1265
HpyCH4V TGCA 3 cut(s) 275, 413, 671
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 176, 185, 272, 491
HpyF3I CTNAG 2 cut(s) 110, 929
Hsp92I GRCGYC 2 cut(s) 488, 761
Hsp92II CATG 3 cut(s) 322, 394, 473
HspAI GCGC 3 cut(s) 264, 488, 761
KasI GGCGCC 2 cut(s) 487, 760
KroI GCCGGC 2 cut(s) 490, 763
KroNI GCCGGC 2 cut(s) 492, 765
Ksp22I TGATCA 1 cut(s) 256
Kzo9I GATC 4 cut(s) 256, 906, 973, 1008
LmnI GCTCC 4 cut(s) 88, 184, 207, 479
Lsp1109I GCAGC 1 cut(s) 494
LweI GCATC 3 cut(s) 115, 284, 823
MaeIII GTNAC 2 cut(s) 406, 679
MalI GATC 4 cut(s) 258, 908, 975, 1010
MbiI CCGCTC 2 cut(s) 202, 655
MboI GATC 4 cut(s) 256, 906, 973, 1008
MluCI AATT 4 cut(s) 873, 923, 1026, 1176
Mly113I GGCGCC 2 cut(s) 488, 761
Mph1103I ATGCAT 1 cut(s) 277
MroNI GCCGGC 2 cut(s) 490, 763
MseI TTAA 2 cut(s) 384, 1017
MslI CAYNNNNRTG 1 cut(s) 128
MspA1I CMGCKG 1 cut(s) 485
MspCI CTTAAG 1 cut(s) 383
MspI CCGG 5 cut(s) 491, 722, 764, 830, 1280
MspR9I CCNGG 3 cut(s) 830, 1182, 1199
MvaI CCWGG 2 cut(s) 1182, 1199
MwoI GCNNNNNNNGC 5 cut(s) 80, 176, 185, 272, 491
NaeI GCCGGC 2 cut(s) 492, 765
NarI GGCGCC 2 cut(s) 488, 761
NciI CCSGG 1 cut(s) 830
NdeII GATC 4 cut(s) 256, 906, 973, 1008
NgoMIV GCCGGC 2 cut(s) 490, 763
NlaIII CATG 3 cut(s) 322, 394, 473
NlaIV GGNNCC 3 cut(s) 489, 762, 828
NmeAIII GCCGAG 3 cut(s) 434, 546, 707
NmuCI GTSAC 2 cut(s) 406, 679
NsiI ATGCAT 1 cut(s) 277
PaeR7I CTCGAG 1 cut(s) 19
PagI TCATGA 1 cut(s) 390
PcsI WCGNNNNNNNCGW 1 cut(s) 1254
PdiI GCCGGC 2 cut(s) 492, 765
PfeI GAWTC 3 cut(s) 842, 1061, 1189
PinAI ACCGGT 1 cut(s) 721
PkrI GCNGC 3 cut(s) 105, 484, 487
PluTI GGCGCC 2 cut(s) 491, 764
Psp6I CCWGG 2 cut(s) 1180, 1197
PspGI CCWGG 2 cut(s) 1180, 1197
PspN4I GGNNCC 3 cut(s) 489, 762, 828
PspPI GGNCC 2 cut(s) 8, 826
PspXI VCTCGAGB 1 cut(s) 19
PsrI GAACNNNNNNTAC 2 cut(s) 606, 638
RsaI GTAC 1 cut(s) 592
RsaNI GTAC 1 cut(s) 591
RseI CAYNNNNRTG 1 cut(s) 128
SalI GTCGAC 1 cut(s) 1069
SaqAI TTAA 2 cut(s) 384, 1017
SatI GCNGC 3 cut(s) 104, 483, 486
Sau3AI GATC 4 cut(s) 256, 906, 973, 1008
Sau96I GGNCC 2 cut(s) 8, 826
ScrFI CCNGG 3 cut(s) 830, 1182, 1199
SfaNI GCATC 3 cut(s) 115, 284, 823
SfcI CTRYAG 1 cut(s) 684
SfoI GGCGCC 2 cut(s) 489, 762
Sfr274I CTCGAG 1 cut(s) 19
SinI GGWCC 2 cut(s) 8, 826
SlaI CTCGAG 1 cut(s) 19
SmiMI CAYNNNNRTG 1 cut(s) 128
SmlI CTYRAG 2 cut(s) 19, 383
SmoI CTYRAG 2 cut(s) 19, 383
Sse9I AATT 4 cut(s) 873, 923, 1026, 1176
SspDI GGCGCC 2 cut(s) 487, 760
StyD4I CCNGG 3 cut(s) 828, 1180, 1197
StyI CCWWGG 1 cut(s) 1107
TaaI ACNGT 1 cut(s) 1265
TaqI TCGA 6 cut(s) 20, 26, 53, 420, 693, 1070
TasI AATT 4 cut(s) 873, 923, 1026, 1176
TauI GCSGC 2 cut(s) 106, 488
TfiI GAWTC 3 cut(s) 842, 1061, 1189
Tru1I TTAA 2 cut(s) 384, 1017
Tru9I TTAA 2 cut(s) 384, 1017
TscAI CASTG 2 cut(s) 94, 856
TseFI GTSAC 2 cut(s) 406, 679
TseI GCWGC 1 cut(s) 482
Tsp45I GTSAC 2 cut(s) 406, 679
TspDTI ATGAA 3 cut(s) 379, 486, 1065
TspGWI ACGGA 4 cut(s) 854, 1139, 1166, 1263
TspRI CASTG 2 cut(s) 94, 856
Vha464I CTTAAG 1 cut(s) 383
VpaK11BI GGWCC 2 cut(s) 8, 826
XapI RAATTY 1 cut(s) 1176
XhoI CTCGAG 1 cut(s) 19
XmiI GTMKAC 1 cut(s) 1070
Zsp2I ATGCAT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.