Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

20570714 .. 20571591

Gene Structure 878 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTGCAATGAACAACCATACACAAAACCAACAAGAAGCCTCATCACTCCAAGAAACTTCTCTTCTTTTTCATGGTCCAAAAACTCCAATCCATCTCAGCACCGTCCTCTCGGCTCCGATTCGGATCGACTTCAAATCCGACCAGGTGAATGCCAAAGTCAGATACACAAAAACCCAAAGAAAATGGCAGCTCTAGAAACCATACAGTCTCAGTTGCCACTTCAAGATTCCTCATTTCTCAGCACCAGCACTGTCATTGCACTCACTGTGTTCTTCACACTCCTCTGTGTTTGTATCATTATCGGTCATTTGCTCGAAGAGAACCGCTGGGCGAATGAATCGATCACTGCCCTTCTCTTGGGTTTGGTTGCTGGAGTGGTGGTGTTGCTGGTGACAGGGTTCGAAAGCTCGAAGATTTTGGATCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0008150 GO:0008324 GO:0009987 GO:0010107 GO:0010119 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0051453 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0090333 GO:0098588 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0098805 GO:0099516 GO:0099587 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

143

Amino Acids

15.73

Weight (kDa)

7.7

Isoelectric Point (pI)

56.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	325
AclWI	GGATC	1 cut(s)	132
AfiI	CCNNNNNNNGG	1 cut(s)	358
AgsI	TTSAA	2 cut(s)	134, 224
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	2 cut(s)	191, 408
AluI	AGCT	2 cut(s)	191, 408
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	132
ApeKI	GCWGC	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	75
AsuHPI	GGTGA	2 cut(s)	158, 403
AsuII	TTCGAA	1 cut(s)	402
AvaII	GGWCC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	200
BccI	CCATC	1 cut(s)	100
BciT130I	CCWGG	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	213
BfaI	CTAG	1 cut(s)	194
BisI	GCNGC	1 cut(s)	189
BlsI	GCNGC	1 cut(s)	190
Bme1390I	CCNGG	1 cut(s)	144
Bme18I	GGWCC	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	144
BpmI	CTGGAG	1 cut(s)	393
Bpu14I	TTCGAA	1 cut(s)	402
Bsa29I	ATCGAT	1 cut(s)	341
BsaBI	GATNNNNATC	1 cut(s)	123
BsaXI	ACNNNNNCTCC	2 cut(s)	366, 396
Bsc4I	CCNNNNNNNGG	1 cut(s)	358
Bse3DI	GCAATG	2 cut(s)	13, 255
Bse8I	GATNNNNATC	1 cut(s)	123
BseBI	CCWGG	1 cut(s)	144
BseCI	ATCGAT	1 cut(s)	341
BseJI	GATNNNNATC	1 cut(s)	123
BseLI	CCNNNNNNNGG	1 cut(s)	358
BseMI	GCAATG	2 cut(s)	13, 255
BseMII	CTCAG	3 cut(s)	110, 224, 253
BseRI	GAGGAG	1 cut(s)	272
BseXI	GCAGC	1 cut(s)	200
BseYI	CCCAGC	1 cut(s)	327
BshVI	ATCGAT	1 cut(s)	341
BslI	CCNNNNNNNGG	1 cut(s)	358
BsmAI	GTCTC	1 cut(s)	213
BsmI	GAATGC	1 cut(s)	155
Bsp119I	TTCGAA	1 cut(s)	402
Bsp143I	GATC	3 cut(s)	124, 342, 421
BspACI	CCGC	1 cut(s)	325
BspCNI	CTCAG	3 cut(s)	109, 223, 252
BspDI	ATCGAT	1 cut(s)	341
BspLI	GGNNCC	1 cut(s)	115
BspPI	GGATC	1 cut(s)	132
BspT104I	TTCGAA	1 cut(s)	402
BsrDI	GCAATG	2 cut(s)	13, 255
BssMI	GATC	3 cut(s)	124, 342, 421
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	4 cut(s)	104, 207, 253, 268
Bst6I	CTCTTC	2 cut(s)	67, 312
BstBI	TTCGAA	1 cut(s)	402
BstDEI	CTNAG	3 cut(s)	96, 210, 239
BstKTI	GATC	3 cut(s)	127, 345, 424
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	3 cut(s)	124, 342, 421
BstNI	CCWGG	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
Bsu15I	ATCGAT	1 cut(s)	341
BsuTUI	ATCGAT	1 cut(s)	341
BtsI	GCAGTG	1 cut(s)	345
BtsIMutI	CAGTG	3 cut(s)	249, 264, 345
Cfr13I	GGNCC	1 cut(s)	75
ClaI	ATCGAT	1 cut(s)	341
CsiI	ACCWGGT	1 cut(s)	142
CviAII	CATG	1 cut(s)	72
CviJI	RGCY	4 cut(s)	39, 114, 191, 408
CviKI_1	RGCY	4 cut(s)	39, 114, 191, 408
DdeI	CTNAG	3 cut(s)	96, 210, 239
DpnI	GATC	3 cut(s)	126, 344, 423
DpnII	GATC	3 cut(s)	124, 342, 421
Eam1104I	CTCTTC	2 cut(s)	67, 312
EarI	CTCTTC	2 cut(s)	67, 312
Eco47I	GGWCC	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	142
FaeI	CATG	1 cut(s)	75
FaiI	YATR	3 cut(s)	19, 73, 203
FatI	CATG	1 cut(s)	71
Fnu4HI	GCNGC	1 cut(s)	189
Fsp4HI	GCNGC	1 cut(s)	189
FspBI	CTAG	1 cut(s)	194
GluI	GCNGC	1 cut(s)	189
GsaI	CCCAGC	1 cut(s)	331
GsuI	CTGGAG	1 cut(s)	393
Hin1II	CATG	1 cut(s)	75
HinfI	GANTC	3 cut(s)	119, 227, 338
HphI	GGTGA	2 cut(s)	158, 403
Hpy188I	TCNGA	4 cut(s)	118, 124, 140, 162
Hpy188III	TCNNGA	2 cut(s)	194, 224
HpyAV	CCTTC	1 cut(s)	362
HpyCH4III	ACNGT	4 cut(s)	104, 207, 253, 268
HpyCH4V	TGCA	2 cut(s)	6, 260
HpyF3I	CTNAG	3 cut(s)	96, 210, 239
Hsp92II	CATG	1 cut(s)	75
Kzo9I	GATC	3 cut(s)	124, 342, 421
LmnI	GCTCC	1 cut(s)	119
LpnPI	CCDG	7 cut(s)	129, 156, 259, 313, 357, 374, 381
Lsp1109I	GCAGC	1 cut(s)	200
MabI	ACCWGGT	1 cut(s)	142
MaeI	CTAG	1 cut(s)	194
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	3 cut(s)	126, 344, 423
MboI	GATC	3 cut(s)	124, 342, 421
MboII	GAAGA	4 cut(s)	54, 265, 329, 424
MflI	RGATCY	1 cut(s)	421
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	4 cut(s)	50, 117, 241, 293
MspA1I	CMGCKG	1 cut(s)	327
MspR9I	CCNGG	1 cut(s)	144
Mva1269I	GAATGC	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	144
NdeII	GATC	3 cut(s)	124, 342, 421
NlaIII	CATG	1 cut(s)	75
NlaIV	GGNNCC	1 cut(s)	115
NmeAIII	GCCGAG	1 cut(s)	90
NmuCI	GTSAC	1 cut(s)	391
NspV	TTCGAA	1 cut(s)	402
PctI	GAATGC	1 cut(s)	155
PfeI	GAWTC	3 cut(s)	119, 227, 338
PkrI	GCNGC	1 cut(s)	190
Psp6I	CCWGG	1 cut(s)	142
PspFI	CCCAGC	1 cut(s)	327
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	115
PspPI	GGNCC	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	421
SatI	GCNGC	1 cut(s)	189
Sau3AI	GATC	3 cut(s)	124, 342, 421
Sau96I	GGNCC	1 cut(s)	75
ScrFI	CCNGG	1 cut(s)	144
SetI	ASST	3 cut(s)	148, 193, 410
SexAI	ACCWGGT	1 cut(s)	142
SfuI	TTCGAA	1 cut(s)	402
SinI	GGWCC	1 cut(s)	75
SsiI	CCGC	1 cut(s)	325
SspMI	CTAG	1 cut(s)	194
StyD4I	CCNGG	1 cut(s)	142
TaaI	ACNGT	4 cut(s)	104, 207, 253, 268
TaqI	TCGA	5 cut(s)	127, 315, 341, 402, 410
TaqII	GACCGA	1 cut(s)	293
TfiI	GAWTC	3 cut(s)	119, 227, 338
TscAI	CASTG	3 cut(s)	256, 271, 352
TseFI	GTSAC	1 cut(s)	391
TseI	GCWGC	1 cut(s)	188
Tsp45I	GTSAC	1 cut(s)	391
TspDTI	ATGAA	3 cut(s)	24, 60, 351
TspRI	CASTG	3 cut(s)	256, 271, 352
VpaK11BI	GGWCC	1 cut(s)	75
XbaI	TCTAGA	1 cut(s)	193
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.