Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

21134413 .. 21135076

Gene Structure 664 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTATGATCTTCGGGAACTGAAGACTGTTCTCATTGAGGCCACGGGTGGCAACACCGGCATTGGATTGGCATTCATTGCAGCAAGCAGGGGCTACAAGGTTAAGGTGACCATGCCATCTTCGATGAGTATTGAGAGAAGAATTGTGCTCCTAGGTATTAAGGGAGTCTTTGATAAAGCCGAGGAGTTATTGAGTAACACGCCTAATGGTTATATACTTGGCCAATTTGCAAATCCTGCCAATCCGAAGGTAACTTTTGGAGTAACTATTCATTATGAAACCACTGGCCCGGAGATATGGAGAGACACAGGAGGGAAGGTTGATGCCCTGGTTTCGGGAATAGGGACTGGGGGTACCGTTGCCGGTGCAGGGACGTTCCTTAAAGAGCAGAATCCAGAGATTAAGGTGTACGGTGTAGAACCAGCCGAAAGCCCAGTCTTGAACGGTGGCCAAGCTGGTGAGTTACTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000097 GO:0003674 GO:0003824 GO:0004124 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006534 GO:0006535 GO:0006563 GO:0006790 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009069 GO:0009070 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0016829 GO:0016846 GO:0019344 GO:0019752 GO:0019842 GO:0030170 GO:0036094 GO:0042592 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044272 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0046394 GO:0048037 GO:0048878 GO:0050662 GO:0050801 GO:0055080 GO:0055081 GO:0065007 GO:0065008 GO:0070279 GO:0071704 GO:0080144 GO:0080145 GO:0080146 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00270 ko00920 ko01100 ko01110 ko01120 ko01130 ko01200 ko01230 map00270 map00920 map01100 map01110 map01120 map01130 map01200 map01230

Pfam Domains

Protein Families

PALP

Protein Analysis

157

Amino Acids

16.4

Weight (kDa)

5.45

Isoelectric Point (pI)

34.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	7 - 151	6.7e-33	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	353
AccB1I	GGYRCC	1 cut(s)	353
AcoI	YGGCCR	2 cut(s)	220, 448
AcuI	CTGAAG	1 cut(s)	41
AfaI	GTAC	2 cut(s)	355, 410
AfiI	CCNNNNNNNGG	2 cut(s)	334, 369
AgsI	TTSAA	1 cut(s)	442
AjnI	CCWGG	1 cut(s)	327
AluBI	AGCT	1 cut(s)	455
AluI	AGCT	1 cut(s)	455
Alw21I	GWGCWC	1 cut(s)	150
Alw26I	GTCTC	1 cut(s)	297
AoxI	GGCC	4 cut(s)	39, 220, 286, 448
ApeKI	GCWGC	1 cut(s)	80
ArsI	GACNNNNNNTTYG	2 cut(s)	420, 452
Asp718I	GGTACC	1 cut(s)	353
AspA2I	CCTAGG	1 cut(s)	151
AspS9I	GGNCC	1 cut(s)	287
AsuC2I	CCSGG	1 cut(s)	290
AsuHPI	GGTGA	2 cut(s)	118, 470
AvrII	CCTAGG	1 cut(s)	151
BalI	TGGCCA	2 cut(s)	222, 450
BanI	GGYRCC	1 cut(s)	353
BbsI	GAAGAC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	150
BbvI	GCAGC	1 cut(s)	92
BccI	CCATC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	329
BcnI	CCSGG	1 cut(s)	290
BcoDI	GTCTC	1 cut(s)	297
BfaI	CTAG	1 cut(s)	152
BisI	GCNGC	1 cut(s)	81
BlnI	CCTAGG	1 cut(s)	151
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	2 cut(s)	290, 329
BmgT120I	GGNCC	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	355
BmrFI	CCNGG	2 cut(s)	290, 329
BmrI	ACTGGG	2 cut(s)	357, 428
BmsI	GCATC	1 cut(s)	313
BmuI	ACTGGG	2 cut(s)	357, 428
BpiI	GAAGAC	1 cut(s)	29
BpuMI	CCSGG	1 cut(s)	290
BsaJI	CCNNGG	4 cut(s)	42, 151, 180, 327
BsaXI	ACNNNNNCTCC	2 cut(s)	303, 333
Bsc4I	CCNNNNNNNGG	2 cut(s)	334, 369
Bse118I	RCCGGY	2 cut(s)	56, 362
Bse1I	ACTGG	3 cut(s)	289, 352, 434
Bse3DI	GCAATG	1 cut(s)	75
BseBI	CCWGG	1 cut(s)	329
BseDI	CCNNGG	4 cut(s)	42, 151, 180, 327
BseLI	CCNNNNNNNGG	2 cut(s)	334, 369
BseMI	GCAATG	1 cut(s)	75
BseNI	ACTGG	3 cut(s)	289, 352, 434
BseRI	GAGGAG	1 cut(s)	197
BseXI	GCAGC	1 cut(s)	92
BsgI	GTGCAG	1 cut(s)	387
BshFI	GGCC	4 cut(s)	41, 222, 288, 450
BshNI	GGYRCC	1 cut(s)	353
BsiHKAI	GWGCWC	1 cut(s)	150
BsiSI	CCGG	3 cut(s)	57, 290, 363
BslFI	GGGAC	2 cut(s)	358, 385
BslI	CCNNNNNNNGG	2 cut(s)	334, 369
BsmAI	GTCTC	1 cut(s)	297
BsmFI	GGGAC	2 cut(s)	358, 385
BsmI	GAATGC	1 cut(s)	71
BsnI	GGCC	4 cut(s)	41, 222, 288, 450
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	1 cut(s)	7
BspANI	GGCC	4 cut(s)	41, 222, 288, 450
BspLI	GGNNCC	1 cut(s)	355
BspT107I	GGYRCC	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	75
BsrFI	RCCGGY	2 cut(s)	56, 362
BsrI	ACTGG	3 cut(s)	289, 352, 434
BssAI	RCCGGY	2 cut(s)	56, 362
BssECI	CCNNGG	4 cut(s)	42, 151, 180, 327
BssMI	GATC	1 cut(s)	7
BssT1I	CCWWGG	1 cut(s)	151
Bst2UI	CCWGG	1 cut(s)	329
Bst4CI	ACNGT	4 cut(s)	28, 358, 413, 446
BstAPI	GCANNNNNTGC	2 cut(s)	77, 236
BstC8I	GCNNGC	1 cut(s)	85
BstDSI	CCRYGG	1 cut(s)	42
BstEII	GGTNACC	1 cut(s)	106
BstKTI	GATC	1 cut(s)	10
BstMAI	GTCTC	1 cut(s)	297
BstMBI	GATC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 77, 236
BstNI	CCWGG	1 cut(s)	329
BstPI	GGTNACC	1 cut(s)	106
BstSCI	CCNGG	2 cut(s)	288, 327
BstV1I	GCAGC	1 cut(s)	92
BstV2I	GAAGAC	1 cut(s)	29
BsuRI	GGCC	4 cut(s)	41, 222, 288, 450
BtgI	CCRYGG	1 cut(s)	42
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	85
Cfr10I	RCCGGY	2 cut(s)	56, 362
Cfr13I	GGNCC	1 cut(s)	287
Csp6I	GTAC	2 cut(s)	354, 409
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	9 cut(s)	41, 93, 179, 222, 288, 425, 432, 450, 455
CviKI_1	RGCY	9 cut(s)	41, 93, 179, 222, 288, 425, 432, 450, 455
CviQI	GTAC	2 cut(s)	354, 409
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
EaeI	YGGCCR	2 cut(s)	220, 448
Eco130I	CCWWGG	1 cut(s)	151
Eco57I	CTGAAG	1 cut(s)	41
Eco91I	GGTNACC	1 cut(s)	106
EcoO65I	GGTNACC	1 cut(s)	106
EcoRII	CCWGG	1 cut(s)	327
EcoT14I	CCWWGG	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	151
FaeI	CATG	1 cut(s)	115
FaiI	YATR	7 cut(s)	6, 113, 213, 215, 276, 298, 469
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FaqI	GGGAC	2 cut(s)	358, 385
FatI	CATG	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	1 cut(s)	152
GluI	GCNGC	1 cut(s)	81
HaeIII	GGCC	4 cut(s)	41, 222, 288, 450
HapII	CCGG	3 cut(s)	57, 290, 363
Hin1II	CATG	1 cut(s)	115
HinfI	GANTC	2 cut(s)	165, 391
HpaII	CCGG	3 cut(s)	57, 290, 363
HphI	GGTGA	2 cut(s)	118, 470
Hpy166II	GTNNAC	1 cut(s)	409
Hpy188I	TCNGA	1 cut(s)	246
Hpy188III	TCNNGA	4 cut(s)	14, 336, 395, 439
Hpy8I	GTNNAC	1 cut(s)	409
HpyAV	CCTTC	2 cut(s)	241, 310
HpyCH4III	ACNGT	4 cut(s)	28, 358, 413, 446
HpyCH4IV	ACGT	1 cut(s)	374
HpyCH4V	TGCA	3 cut(s)	80, 230, 368
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 77, 236
HpySE526I	ACGT	1 cut(s)	374
Hsp92II	CATG	1 cut(s)	115
KpnI	GGTACC	1 cut(s)	357
Kzo9I	GATC	1 cut(s)	7
LmnI	GCTCC	1 cut(s)	153
Lsp1109I	GCAGC	1 cut(s)	92
LweI	GCATC	1 cut(s)	313
MaeI	CTAG	1 cut(s)	152
MaeII	ACGT	1 cut(s)	374
MaeIII	GTNAC	5 cut(s)	106, 194, 250, 262, 462
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	3 cut(s)	34, 111, 150
MhlI	GDGCHC	1 cut(s)	150
MlsI	TGGCCA	2 cut(s)	222, 450
MluCI	AATT	2 cut(s)	141, 224
MluNI	TGGCCA	2 cut(s)	222, 450
MlyI	GAGTC	1 cut(s)	174
MnlI	CCTC	3 cut(s)	31, 175, 305
Mox20I	TGGCCA	2 cut(s)	222, 450
MscI	TGGCCA	2 cut(s)	222, 450
MseI	TTAA	4 cut(s)	102, 159, 381, 402
Msp20I	TGGCCA	2 cut(s)	222, 450
MspI	CCGG	3 cut(s)	57, 290, 363
MspR9I	CCNGG	2 cut(s)	290, 329
Mva1269I	GAATGC	1 cut(s)	71
MvaI	CCWGG	1 cut(s)	329
MwoI	GCNNNNNNNGC	3 cut(s)	57, 77, 236
NciI	CCSGG	1 cut(s)	290
NdeII	GATC	1 cut(s)	7
NlaIII	CATG	1 cut(s)	115
NlaIV	GGNNCC	1 cut(s)	355
NmeAIII	GCCGAG	1 cut(s)	205
NmuCI	GTSAC	1 cut(s)	106
PctI	GAATGC	1 cut(s)	71
PfeI	GAWTC	1 cut(s)	391
PkrI	GCNGC	1 cut(s)	82
PleI	GAGTC	1 cut(s)	173
PpsI	GAGTC	1 cut(s)	173
Psp6I	CCWGG	1 cut(s)	327
PspEI	GGTNACC	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	327
PspN4I	GGNNCC	1 cut(s)	355
PspPI	GGNCC	1 cut(s)	287
RsaI	GTAC	2 cut(s)	355, 410
RsaNI	GTAC	2 cut(s)	354, 409
SaqAI	TTAA	4 cut(s)	102, 159, 381, 402
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	1 cut(s)	7
Sau96I	GGNCC	1 cut(s)	287
SchI	GAGTC	1 cut(s)	174
ScrFI	CCNGG	2 cut(s)	290, 329
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	8 cut(s)	102, 108, 157, 252, 321, 377, 408, 457
SfaNI	GCATC	1 cut(s)	313
Sse9I	AATT	2 cut(s)	141, 224
SspMI	CTAG	1 cut(s)	152
StyD4I	CCNGG	2 cut(s)	288, 327
StyI	CCWWGG	1 cut(s)	151
TaaI	ACNGT	4 cut(s)	28, 358, 413, 446
TaiI	ACGT	1 cut(s)	377
TaqI	TCGA	1 cut(s)	122
TasI	AATT	2 cut(s)	141, 224
TfiI	GAWTC	1 cut(s)	391
Tru1I	TTAA	4 cut(s)	102, 159, 381, 402
Tru9I	TTAA	4 cut(s)	102, 159, 381, 402
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	1 cut(s)	106
TseI	GCWGC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	106
TspDTI	ATGAA	3 cut(s)	64, 260, 291
TspRI	CASTG	1 cut(s)	289
XmaJI	CCTAGG	1 cut(s)	151
XspI	CTAG	1 cut(s)	152

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.