pycom04g19660

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Forward (+)
21329085 .. 21330110
1026 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 411 bp
ATGAAGTTTCTCCCCTGTGTCATCCCCAACTGCACACTGAACTACAACTGCCAGCCCGCTCCACCTCCAGTTCCTCAGAAAGAAGCCCCTCGCAATTTGTCAGCCTTTGATCCTTGTTACTGGGCTTACTGCGGAGAAGGTAACTGCGTAAGGAACAGTACATACCATTACACCCCCATATGTGAATGCAAATCCGGTGCCTCTAATCTTCTCAATGTCACATTATTCCCCTGCTACAATCAATGCACGCTTCAGAGTGACTGTGCGAGCCTCGGAATTAAGGTTGCAAACGCAAGTTCCTCCCCTACTGGCTCTGTGAATAACAGTAGTCAAGCTACGTCGTTTTTGCCCGGAAAGTTCCAGTTGATGGCCGTAGCGATCGTGTCTGTGGGTCTGATTCTGAGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

14.63

Weight (kDa)

8.5

Isoelectric Point (pI)

44.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 197
AccB7I CCANNNNNTGG 1 cut(s) 367
AccBSI CCGCTC 1 cut(s) 59
AciI CCGC 2 cut(s) 57, 132
AclWI GGATC 1 cut(s) 104
AcoI YGGCCR 1 cut(s) 369
AcuI CTGAAG 1 cut(s) 236
AfaI GTAC 1 cut(s) 160
AfiI CCNNNNNNNGG 1 cut(s) 367
AluBI AGCT 1 cut(s) 335
AluI AGCT 1 cut(s) 335
AlwI GGATC 1 cut(s) 104
AoxI GGCC 1 cut(s) 369
AsuC2I CCSGG 1 cut(s) 351
BanI GGYRCC 1 cut(s) 197
BccI CCATC 1 cut(s) 361
BceAI ACGGC 1 cut(s) 356
BcnI CCSGG 1 cut(s) 351
Bme1390I CCNGG 1 cut(s) 351
BmiI GGNNCC 1 cut(s) 199
BmrFI CCNGG 1 cut(s) 351
BmrI ACTGGG 1 cut(s) 130
BmuI ACTGGG 1 cut(s) 130
BpmI CTGGAG 1 cut(s) 51
BpuMI CCSGG 1 cut(s) 351
BsaJI CCNNGG 1 cut(s) 271
BsaWI WCCGGW 1 cut(s) 194
Bsc4I CCNNNNNNNGG 1 cut(s) 367
Bse1I ACTGG 4 cut(s) 68, 125, 313, 361
BseDI CCNNGG 1 cut(s) 271
BseGI GGATG 1 cut(s) 21
BseLI CCNNNNNNNGG 1 cut(s) 367
BseMII CTCAG 2 cut(s) 89, 392
BseNI ACTGG 4 cut(s) 68, 125, 313, 361
BsgI GTGCAG 1 cut(s) 16
Bsh1285I CGRYCG 1 cut(s) 381
BshFI GGCC 1 cut(s) 371
BshNI GGYRCC 1 cut(s) 197
BsiEI CGRYCG 1 cut(s) 381
BsiSI CCGG 2 cut(s) 195, 351
BslI CCNNNNNNNGG 1 cut(s) 367
BsmI GAATGC 1 cut(s) 191
BsnI GGCC 1 cut(s) 371
Bsp143I GATC 2 cut(s) 109, 378
BspACI CCGC 2 cut(s) 57, 132
BspANI GGCC 1 cut(s) 371
BspCNI CTCAG 2 cut(s) 88, 393
BspLI GGNNCC 1 cut(s) 199
BspPI GGATC 1 cut(s) 104
BspT107I GGYRCC 1 cut(s) 197
BsrBI CCGCTC 1 cut(s) 59
BsrI ACTGG 4 cut(s) 68, 125, 313, 361
BssECI CCNNGG 1 cut(s) 271
BssMI GATC 2 cut(s) 109, 378
Bst4CI ACNGT 3 cut(s) 158, 263, 326
BstC8I GCNNGC 4 cut(s) 53, 57, 248, 268
BstDEI CTNAG 2 cut(s) 75, 401
BstF5I GGATG 1 cut(s) 21
BstKTI GATC 2 cut(s) 112, 381
BstMBI GATC 2 cut(s) 109, 378
BstMCI CGRYCG 1 cut(s) 381
BstSCI CCNGG 1 cut(s) 349
BsuRI GGCC 1 cut(s) 371
BtsCI GGATG 1 cut(s) 21
BtsIMutI CAGTG 1 cut(s) 35
Cac8I GCNNGC 4 cut(s) 53, 57, 248, 268
Csp6I GTAC 1 cut(s) 159
CviJI RGCY 8 cut(s) 55, 86, 104, 125, 270, 312, 335, 371
CviKI_1 RGCY 8 cut(s) 55, 86, 104, 125, 270, 312, 335, 371
CviQI GTAC 1 cut(s) 159
DdeI CTNAG 2 cut(s) 75, 401
DpnI GATC 2 cut(s) 111, 380
DpnII GATC 2 cut(s) 109, 378
EaeI YGGCCR 1 cut(s) 369
Eco57I CTGAAG 1 cut(s) 236
FaiI YATR 3 cut(s) 163, 179, 181
FauI CCCGC 1 cut(s) 64
FauNDI CATATG 1 cut(s) 179
FokI GGATG 1 cut(s) 8
GsuI CTGGAG 1 cut(s) 51
HaeIII GGCC 1 cut(s) 371
HapII CCGG 2 cut(s) 195, 351
HinfI GANTC 1 cut(s) 397
HpaII CCGG 2 cut(s) 195, 351
Hpy188I TCNGA 5 cut(s) 78, 255, 275, 396, 402
Hpy99I CGWCG 1 cut(s) 343
HpyAV CCTTC 1 cut(s) 131
HpyCH4III ACNGT 3 cut(s) 158, 263, 326
HpyCH4IV ACGT 1 cut(s) 338
HpyCH4V TGCA 4 cut(s) 33, 189, 246, 287
HpyF3I CTNAG 2 cut(s) 75, 401
HpySE526I ACGT 1 cut(s) 338
Kzo9I GATC 2 cut(s) 109, 378
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 9 cut(s) 28, 65, 81, 106, 208, 244, 294, 364, 374
MaeII ACGT 1 cut(s) 338
MaeIII GTNAC 4 cut(s) 116, 140, 217, 257
MalI GATC 2 cut(s) 111, 380
MbiI CCGCTC 1 cut(s) 59
MboI GATC 2 cut(s) 109, 378
MboII GAAGA 1 cut(s) 200
MluCI AATT 2 cut(s) 94, 276
MnlI CCTC 7 cut(s) 75, 84, 99, 211, 281, 310, 396
MseI TTAA 1 cut(s) 279
MspI CCGG 2 cut(s) 195, 351
MspR9I CCNGG 1 cut(s) 351
Mva1269I GAATGC 1 cut(s) 191
NciI CCSGG 1 cut(s) 351
NdeI CATATG 1 cut(s) 179
NdeII GATC 2 cut(s) 109, 378
NlaIV GGNNCC 1 cut(s) 199
NmuCI GTSAC 2 cut(s) 217, 257
PctI GAATGC 1 cut(s) 191
PfeI GAWTC 1 cut(s) 397
PflMI CCANNNNNTGG 1 cut(s) 367
Ple19I CGATCG 1 cut(s) 381
PspN4I GGNNCC 1 cut(s) 199
PsrI GAACNNNNNNTAC 2 cut(s) 146, 178
PvuI CGATCG 1 cut(s) 381
RsaI GTAC 1 cut(s) 160
RsaNI GTAC 1 cut(s) 159
SaqAI TTAA 1 cut(s) 279
Sau3AI GATC 2 cut(s) 109, 378
ScrFI CCNGG 1 cut(s) 351
SetI ASST 5 cut(s) 67, 142, 285, 337, 341
Sse9I AATT 2 cut(s) 94, 276
SsiI CCGC 2 cut(s) 57, 132
StyD4I CCNGG 1 cut(s) 349
TaaI ACNGT 3 cut(s) 158, 263, 326
TaiI ACGT 1 cut(s) 341
TasI AATT 2 cut(s) 94, 276
TatI WGTACW 1 cut(s) 158
TfiI GAWTC 1 cut(s) 397
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 1 cut(s) 42
TseFI GTSAC 2 cut(s) 217, 257
Tsp45I GTSAC 2 cut(s) 217, 257
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 42
Van91I CCANNNNNTGG 1 cut(s) 367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.