pycom04g19830

Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Reverse (-)
21455315 .. 21455950
636 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 420 bp
ATGTCCCTGGGCTTTATGACTTTATCTCCACTTGTAATCTATATAATACCATTCAACTTCACTTGCCCTTCACACAATTATTTTCTACGTCTCCCCTTCTCCTCAAACCCTCCATCAACGGAATACCAAAAGCTTGGTTATTGCCAGTTCATCGTCAAAGTTCGAGCAGAAGAACAATCCTTGAAGAAACAAAGAAAAATCATGGCAATGTTTGCGCAGGATCTTGAAGCCACAGAGCTAAGATTAGGGTTACCGGGCACCAATGATTCCGAGCAGAACACCTCTTCTACTACTTTGGTTAGCAAGAGTAACAAAAGACCACTGCAATCCGACATGAACGAAAACAATGATTCTTTACCCGCCAACAGATCCGACGAGCAAATTTCTCAGCCTCCACCTTCCAATGCAGGACACAAGTAG

Protein Analysis

140

Amino Acids

15.64

Weight (kDa)

7.77

Isoelectric Point (pI)

71.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 216
AccB1I GGYRCC 1 cut(s) 257
AciI CCGC 1 cut(s) 360
AclWI GGATC 2 cut(s) 228, 363
AcsI RAATTY 1 cut(s) 381
AgsI TTSAA 3 cut(s) 55, 184, 227
AjnI CCWGG 1 cut(s) 6
AluBI AGCT 2 cut(s) 133, 238
AluI AGCT 2 cut(s) 133, 238
Alw26I GTCTC 1 cut(s) 95
AlwI GGATC 2 cut(s) 228, 363
ApoI RAATTY 1 cut(s) 381
AspLEI GCGC 1 cut(s) 217
AsuC2I CCSGG 1 cut(s) 255
BaeGI GKGCMC 1 cut(s) 260
BanI GGYRCC 1 cut(s) 257
BccI CCATC 1 cut(s) 121
BciT130I CCWGG 1 cut(s) 8
BcnI CCSGG 1 cut(s) 255
BcoDI GTCTC 1 cut(s) 95
Bme1390I CCNGG 2 cut(s) 8, 255
BmiI GGNNCC 1 cut(s) 259
BmrFI CCNGG 2 cut(s) 8, 255
BpuMI CCSGG 1 cut(s) 255
BsaJI CCNNGG 2 cut(s) 6, 7
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bse1I ACTGG 1 cut(s) 145
Bse3DI GCAATG 1 cut(s) 213
BseBI CCWGG 1 cut(s) 8
BseDI CCNNGG 2 cut(s) 6, 7
BseMI GCAATG 1 cut(s) 213
BseMII CTCAG 1 cut(s) 401
BseNI ACTGG 1 cut(s) 145
BseRI GAGGAG 1 cut(s) 91
BseSI GKGCMC 1 cut(s) 260
BshNI GGYRCC 1 cut(s) 257
BsiSI CCGG 1 cut(s) 254
BsmAI GTCTC 1 cut(s) 95
BsmBI CGTCTC 1 cut(s) 95
Bsp1286I GDGCHC 1 cut(s) 260
Bsp143I GATC 2 cut(s) 220, 368
BspACI CCGC 1 cut(s) 360
BspCNI CTCAG 1 cut(s) 400
BspLI GGNNCC 1 cut(s) 259
BspPI GGATC 2 cut(s) 228, 363
BspT107I GGYRCC 1 cut(s) 257
BsrDI GCAATG 1 cut(s) 213
BsrI ACTGG 1 cut(s) 145
BssECI CCNNGG 2 cut(s) 6, 7
BssMI GATC 2 cut(s) 220, 368
Bst2UI CCWGG 1 cut(s) 8
Bst6I CTCTTC 1 cut(s) 289
BstAPI GCANNNNNTGC 1 cut(s) 212
BstDEI CTNAG 2 cut(s) 239, 387
BstEII GGTNACC 1 cut(s) 249
BstHHI GCGC 1 cut(s) 217
BstKTI GATC 2 cut(s) 223, 371
BstMAI GTCTC 1 cut(s) 95
BstMBI GATC 2 cut(s) 220, 368
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstNI CCWGG 1 cut(s) 8
BstPI GGTNACC 1 cut(s) 249
BstSCI CCNGG 2 cut(s) 6, 253
BstSLI GKGCMC 1 cut(s) 260
BstX2I RGATCY 2 cut(s) 220, 368
BstXI CCANNNNNNTGG 1 cut(s) 134
BstYI RGATCY 2 cut(s) 220, 368
BtsI GCAGTG 1 cut(s) 320
BtsIMutI CAGTG 1 cut(s) 320
CfoI GCGC 1 cut(s) 217
CviAII CATG 2 cut(s) 202, 334
CviJI RGCY 5 cut(s) 12, 133, 230, 238, 391
CviKI_1 RGCY 5 cut(s) 12, 133, 230, 238, 391
DdeI CTNAG 2 cut(s) 239, 387
DpnI GATC 2 cut(s) 222, 370
DpnII GATC 2 cut(s) 220, 368
Eam1104I CTCTTC 1 cut(s) 289
EarI CTCTTC 1 cut(s) 289
Eco91I GGTNACC 1 cut(s) 249
EcoO65I GGTNACC 1 cut(s) 249
EcoRII CCWGG 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 95
FaeI CATG 2 cut(s) 205, 337
FaiI YATR 5 cut(s) 17, 42, 44, 203, 335
FatI CATG 2 cut(s) 201, 333
FauI CCCGC 1 cut(s) 367
FspI TGCGCA 1 cut(s) 216
GlaI GCGC 1 cut(s) 216
HapII CCGG 1 cut(s) 254
HhaI GCGC 1 cut(s) 217
Hin1II CATG 2 cut(s) 205, 337
Hin6I GCGC 1 cut(s) 215
HinP1I GCGC 1 cut(s) 215
HindIII AAGCTT 1 cut(s) 131
HinfI GANTC 2 cut(s) 266, 350
HpaII CCGG 1 cut(s) 254
Hpy188I TCNGA 3 cut(s) 271, 331, 373
Hpy188III TCNNGA 1 cut(s) 224
Hpy99I CGWCG 1 cut(s) 377
HpyAV CCTTC 3 cut(s) 78, 106, 408
HpyCH4IV ACGT 1 cut(s) 88
HpyCH4V TGCA 2 cut(s) 325, 407
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 2 cut(s) 239, 387
HpySE526I ACGT 1 cut(s) 88
Hsp92II CATG 2 cut(s) 205, 337
HspAI GCGC 1 cut(s) 215
Kzo9I GATC 2 cut(s) 220, 368
LpnPI CCDG 5 cut(s) 20, 158, 203, 267, 393
MaeII ACGT 1 cut(s) 88
MaeIII GTNAC 2 cut(s) 249, 308
MalI GATC 2 cut(s) 222, 370
MboI GATC 2 cut(s) 220, 368
MboII GAAGA 3 cut(s) 182, 196, 276
MflI RGATCY 2 cut(s) 220, 368
MhlI GDGCHC 1 cut(s) 260
MluCI AATT 2 cut(s) 76, 381
MmeI TCCRAC 2 cut(s) 354, 396
MnlI CCTC 4 cut(s) 112, 120, 292, 402
MslI CAYNNNNRTG 1 cut(s) 206
MspI CCGG 1 cut(s) 254
MspR9I CCNGG 2 cut(s) 8, 255
MvaI CCWGG 1 cut(s) 8
MwoI GCNNNNNNNGC 1 cut(s) 212
NciI CCSGG 1 cut(s) 255
NdeII GATC 2 cut(s) 220, 368
NlaIII CATG 2 cut(s) 205, 337
NlaIV GGNNCC 1 cut(s) 259
NsbI TGCGCA 1 cut(s) 216
PasI CCCWGGG 1 cut(s) 7
PfeI GAWTC 2 cut(s) 266, 350
Psp6I CCWGG 1 cut(s) 6
PspEI GGTNACC 1 cut(s) 249
PspGI CCWGG 1 cut(s) 6
PspN4I GGNNCC 1 cut(s) 259
PsuI RGATCY 2 cut(s) 220, 368
RseI CAYNNNNRTG 1 cut(s) 206
Sau3AI GATC 2 cut(s) 220, 368
ScrFI CCNGG 2 cut(s) 8, 255
SduI GDGCHC 1 cut(s) 260
SetI ASST 5 cut(s) 91, 135, 240, 284, 400
SmiMI CAYNNNNRTG 1 cut(s) 206
Sse9I AATT 2 cut(s) 76, 381
SsiI CCGC 1 cut(s) 360
StyD4I CCNGG 2 cut(s) 6, 253
TaiI ACGT 1 cut(s) 91
TaqI TCGA 1 cut(s) 163
TasI AATT 2 cut(s) 76, 381
TfiI GAWTC 2 cut(s) 266, 350
TscAI CASTG 1 cut(s) 327
TspDTI ATGAA 2 cut(s) 139, 350
TspGWI ACGGA 1 cut(s) 134
TspRI CASTG 1 cut(s) 327
XapI RAATTY 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.