pycom04g19870

Pathogenesis-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Forward (+)
21493715 .. 21494172
458 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 405 bp
ATGGCGGGCAGTGCATGGGGACAAAGTGCGACGGGTGTTACAGCGACAAGTTTGCCCTACAATCCACAGCAAAACAATTACGATTTGCAGGCTGTAAATGCCTACTGCTCAGCATTTGACGCCGGTCAATCACATGCATGGCGCAGCAGATATGGATGGGCTGCCTTTTGTGGACCTGTTGGCCTTACTGGACAAGCTGCATGCGGAAGATGTCTTAAGATACGTAGGGCGCTGGTATACACAAATAATCTTATGCAAAATGATGTATGTTTGCATTGCAGCACAGGAGGCTTACACTTGGACACGAATGTGTTTAACCAAATTGATCAGTGCAACACCAACGAAAATGGCAATGCCCAAGGCCGCCTTTTCGTCACCTACGACTTTGTCAACTGTGGCGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0006952 GO:0008150 GO:0050896
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Barwin

Protein Analysis

135

Amino Acids

14.5

Weight (kDa)

6.23

Isoelectric Point (pI)

28.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Barwin PF00967 9 - 132 9.3e-34 Barwin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 237
AciI CCGC 3 cut(s) 5, 204, 364
AcyI GRCGYC 1 cut(s) 120
AflII CTTAAG 1 cut(s) 215
AleI CACNNNNGTG 1 cut(s) 308
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
AoxI GGCC 2 cut(s) 181, 361
ApeKI GCWGC 4 cut(s) 144, 161, 197, 279
AspLEI GCGC 2 cut(s) 144, 232
AspS9I GGNCC 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 367
AvaII GGWCC 1 cut(s) 173
BbvI GCAGC 4 cut(s) 148, 156, 184, 291
BccI CCATC 1 cut(s) 150
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BclI TGATCA 1 cut(s) 325
BfoI RGCGCY 1 cut(s) 233
BfrI CTTAAG 1 cut(s) 215
BisI GCNGC 5 cut(s) 145, 162, 198, 280, 364
BlpI GCTNAGC 1 cut(s) 109
BlsI GCNGC 5 cut(s) 146, 163, 199, 281, 365
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 173
BoxI GACNNNNGTC 1 cut(s) 123
Bpu1102I GCTNAGC 1 cut(s) 109
BsaAI YACGTR 1 cut(s) 224
BsaHI GRCGYC 1 cut(s) 120
BsaJI CCNNGG 1 cut(s) 358
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 1 cut(s) 193
Bse3DI GCAATG 2 cut(s) 274, 358
BseDI CCNNGG 1 cut(s) 358
BseGI GGATG 1 cut(s) 161
BseMI GCAATG 2 cut(s) 274, 358
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 193
BseXI GCAGC 4 cut(s) 148, 156, 184, 291
BshFI GGCC 2 cut(s) 183, 363
BsiSI CCGG 1 cut(s) 123
BslFI GGGAC 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 33
BsnI GGCC 2 cut(s) 183, 363
Bsp143I GATC 1 cut(s) 325
Bsp1720I GCTNAGC 1 cut(s) 109
BspACI CCGC 3 cut(s) 5, 204, 364
BspANI GGCC 2 cut(s) 183, 363
BspCNI CTCAG 1 cut(s) 122
BspTI CTTAAG 1 cut(s) 215
BsrDI GCAATG 2 cut(s) 274, 358
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 1 cut(s) 193
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 1 cut(s) 358
BssMI GATC 1 cut(s) 325
BssNAI GTATAC 1 cut(s) 238
BssNI GRCGYC 1 cut(s) 120
BssT1I CCWWGG 1 cut(s) 358
Bst1107I GTATAC 1 cut(s) 238
Bst4CI ACNGT 1 cut(s) 395
BstACI GRCGYC 1 cut(s) 120
BstAFI CTTAAG 1 cut(s) 215
BstBAI YACGTR 1 cut(s) 224
BstC8I GCNNGC 3 cut(s) 7, 90, 202
BstDEI CTNAG 1 cut(s) 109
BstF5I GGATG 1 cut(s) 161
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 2 cut(s) 144, 232
BstKTI GATC 1 cut(s) 328
BstMBI GATC 1 cut(s) 325
BstMWI GCNNNNNNNGC 4 cut(s) 11, 98, 119, 288
BstNSI RCATGY 2 cut(s) 137, 204
BstPAI GACNNNNGTC 1 cut(s) 123
BstSNI TACGTA 1 cut(s) 224
BstV1I GCAGC 4 cut(s) 148, 156, 184, 291
BstZ17I GTATAC 1 cut(s) 238
BsuRI GGCC 2 cut(s) 183, 363
BtsCI GGATG 1 cut(s) 161
BtsI GCAGTG 1 cut(s) 16
BtsIMutI CAGTG 2 cut(s) 16, 335
Cac8I GCNNGC 3 cut(s) 7, 90, 202
CfoI GCGC 2 cut(s) 144, 232
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 1 cut(s) 173
CseI GACGC 1 cut(s) 128
CviAII CATG 4 cut(s) 15, 134, 138, 201
CviJI RGCY 6 cut(s) 92, 161, 183, 197, 291, 363
CviKI_1 RGCY 6 cut(s) 92, 161, 183, 197, 291, 363
DdeI CTNAG 1 cut(s) 109
DpnI GATC 1 cut(s) 327
DpnII GATC 1 cut(s) 325
Eco105I TACGTA 1 cut(s) 224
Eco130I CCWWGG 1 cut(s) 358
Eco47I GGWCC 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 358
EcoT22I ATGCAT 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 358
FaeI CATG 4 cut(s) 18, 137, 141, 204
FaiI YATR 8 cut(s) 16, 135, 139, 153, 202, 238, 254, 268
FalI AAGNNNNNCTT 2 cut(s) 351, 383
FaqI GGGAC 1 cut(s) 33
FatI CATG 4 cut(s) 14, 133, 137, 200
FbaI TGATCA 1 cut(s) 325
FblI GTMKAC 1 cut(s) 237
Fnu4HI GCNGC 5 cut(s) 145, 162, 198, 280, 364
FokI GGATG 1 cut(s) 168
Fsp4HI GCNGC 5 cut(s) 145, 162, 198, 280, 364
GlaI GCGC 2 cut(s) 143, 231
GluI GCNGC 5 cut(s) 145, 162, 198, 280, 364
HaeII RGCGCY 1 cut(s) 233
HaeIII GGCC 2 cut(s) 183, 363
HapII CCGG 1 cut(s) 123
HgaI GACGC 1 cut(s) 128
HhaI GCGC 2 cut(s) 144, 232
Hin1I GRCGYC 1 cut(s) 120
Hin1II CATG 4 cut(s) 18, 137, 141, 204
Hin6I GCGC 2 cut(s) 142, 230
HinP1I GCGC 2 cut(s) 142, 230
HincII GTYRAC 1 cut(s) 391
HindII GTYRAC 1 cut(s) 391
HpaII CCGG 1 cut(s) 123
HphI GGTGA 1 cut(s) 367
Hpy166II GTNNAC 3 cut(s) 173, 238, 391
Hpy8I GTNNAC 3 cut(s) 173, 238, 391
Hpy99I CGWCG 1 cut(s) 34
HpyCH4III ACNGT 1 cut(s) 395
HpyCH4IV ACGT 1 cut(s) 223
HpyCH4V TGCA 8 cut(s) 14, 88, 137, 200, 256, 274, 279, 333
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 98, 119, 288
HpyF3I CTNAG 1 cut(s) 109
HpySE526I ACGT 1 cut(s) 223
Hsp92I GRCGYC 1 cut(s) 120
Hsp92II CATG 4 cut(s) 18, 137, 141, 204
HspAI GCGC 2 cut(s) 142, 230
Ksp22I TGATCA 1 cut(s) 325
Kzo9I GATC 1 cut(s) 325
LpnPI CCDG 6 cut(s) 74, 136, 174, 189, 218, 270
Lsp1109I GCAGC 4 cut(s) 148, 156, 184, 291
MaeII ACGT 1 cut(s) 223
MaeIII GTNAC 2 cut(s) 37, 373
MalI GATC 1 cut(s) 327
MboI GATC 1 cut(s) 325
MboII GAAGA 1 cut(s) 219
MluCI AATT 2 cut(s) 76, 321
MnlI CCTC 1 cut(s) 281
Mph1103I ATGCAT 1 cut(s) 139
MseI TTAA 2 cut(s) 216, 315
MslI CAYNNNNRTG 2 cut(s) 136, 308
MspCI CTTAAG 1 cut(s) 215
MspI CCGG 1 cut(s) 123
MwoI GCNNNNNNNGC 4 cut(s) 11, 98, 119, 288
NdeII GATC 1 cut(s) 325
NlaIII CATG 4 cut(s) 18, 137, 141, 204
NmuCI GTSAC 1 cut(s) 373
NsiI ATGCAT 1 cut(s) 139
NspI RCATGY 2 cut(s) 137, 204
OliI CACNNNNGTG 1 cut(s) 308
PaeI GCATGC 1 cut(s) 204
PcsI WCGNNNNNNNCGW 1 cut(s) 378
PflFI GACNNNGTC 1 cut(s) 386
PkrI GCNGC 5 cut(s) 146, 163, 199, 281, 365
Ppu21I YACGTR 1 cut(s) 224
PshAI GACNNNNGTC 1 cut(s) 123
PspPI GGNCC 1 cut(s) 173
PsyI GACNNNGTC 1 cut(s) 386
RseI CAYNNNNRTG 2 cut(s) 136, 308
SaqAI TTAA 2 cut(s) 216, 315
SatI GCNGC 5 cut(s) 145, 162, 198, 280, 364
Sau3AI GATC 1 cut(s) 325
Sau96I GGNCC 1 cut(s) 173
SetI ASST 4 cut(s) 178, 199, 226, 380
SinI GGWCC 1 cut(s) 173
SmiMI CAYNNNNRTG 2 cut(s) 136, 308
SmlI CTYRAG 1 cut(s) 215
SmoI CTYRAG 1 cut(s) 215
SnaBI TACGTA 1 cut(s) 224
SphI GCATGC 1 cut(s) 204
Sse9I AATT 2 cut(s) 76, 321
SsiI CCGC 3 cut(s) 5, 204, 364
StyI CCWWGG 1 cut(s) 358
TaaI ACNGT 1 cut(s) 395
TaiI ACGT 1 cut(s) 226
TasI AATT 2 cut(s) 76, 321
TauI GCSGC 1 cut(s) 366
Tru1I TTAA 2 cut(s) 216, 315
Tru9I TTAA 2 cut(s) 216, 315
TscAI CASTG 2 cut(s) 16, 335
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 4 cut(s) 144, 161, 197, 279
Tsp45I GTSAC 1 cut(s) 373
TspRI CASTG 2 cut(s) 16, 335
Tth111I GACNNNGTC 1 cut(s) 386
Vha464I CTTAAG 1 cut(s) 215
VpaK11BI GGWCC 1 cut(s) 173
XceI RCATGY 2 cut(s) 137, 204
XmiI GTMKAC 1 cut(s) 237
Zsp2I ATGCAT 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.