Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

21539819 .. 21540169

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGGAAAGCGTCAAGAAATTCGCAGACACAGCTGAGAAGTGCTTGTCTGAATCGGGAATGGACCGCCCCACTTTGAACGACATCTTGTGGAACCTCGAGTTCGCGCTCCAGTTGCAGGACGACACAGATGGCTCGAGTCACTCCTCAAGACGCGAGAGAAGTGACTCTGACGACCCCCATCTGAGAAACCAGAACATGATGGCAATACACTACAGCAACCTGAGCCTTGGAAGTGAGAGTGATTTGGGTGAAGAATCCAACACCAACAACAACAACAACACCACCACAAATGAGAACACCGGCGACACCAGCGCAATCTTCTCACAGATTGTCAATCCAGAAGGTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0016324 GO:0030427 GO:0035838 GO:0042995 GO:0044425 GO:0044459 GO:0044463 GO:0044464 GO:0045177 GO:0051286 GO:0071944 GO:0090404 GO:0090406 GO:0098590 GO:0120025 GO:0120038

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Malectin_like Pkinase_Tyr

Protein Analysis

117

Amino Acids

12.91

Weight (kDa)

4.38

Isoelectric Point (pI)

51.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	104, 153
AciI	CCGC	1 cut(s)	64
AcsI	RAATTY	1 cut(s)	17
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgsI	TTSAA	1 cut(s)	76
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
Ama87I	CYCGRG	2 cut(s)	95, 133
ApoI	RAATTY	1 cut(s)	17
AspLEI	GCGC	2 cut(s)	106, 314
AspS9I	GGNCC	1 cut(s)	61
AsuHPI	GGTGA	1 cut(s)	260
AvaI	CYCGRG	2 cut(s)	95, 133
AvaII	GGWCC	1 cut(s)	61
BccI	CCATC	3 cut(s)	122, 186, 193
BfmI	CTRYAG	1 cut(s)	211
Bme18I	GGWCC	1 cut(s)	61
BmeT110I	CYCGRG	2 cut(s)	95, 133
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	1 cut(s)	92
BpmI	CTGGAG	1 cut(s)	92
Bpu10I	CCTNAGC	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	130
BsaJI	CCNNGG	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse118I	RCCGGY	1 cut(s)	299
Bse1I	ACTGG	1 cut(s)	109
BseDI	CCNNGG	1 cut(s)	226
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMII	CTCAG	3 cut(s)	24, 173, 212
BseNI	ACTGG	1 cut(s)	109
BseRI	GAGGAG	1 cut(s)	133
Bsh1236I	CGCG	2 cut(s)	104, 153
BsiHKCI	CYCGRG	2 cut(s)	95, 133
BsiSI	CCGG	1 cut(s)	300
BslI	CCNNNNNNNGG	1 cut(s)	115
BsoBI	CYCGRG	2 cut(s)	95, 133
BspACI	CCGC	1 cut(s)	64
BspCNI	CTCAG	3 cut(s)	25, 174, 213
BspFNI	CGCG	2 cut(s)	104, 153
BspLI	GGNNCC	1 cut(s)	92
BsrFI	RCCGGY	1 cut(s)	299
BsrI	ACTGG	1 cut(s)	109
BssAI	RCCGGY	1 cut(s)	299
BssECI	CCNNGG	1 cut(s)	226
BssT1I	CCWWGG	1 cut(s)	226
BstDEI	CTNAG	3 cut(s)	33, 182, 221
BstFNI	CGCG	2 cut(s)	104, 153
BstHHI	GCGC	2 cut(s)	106, 314
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 112, 222, 309
BstSFI	CTRYAG	1 cut(s)	211
BstUI	CGCG	2 cut(s)	104, 153
CfoI	GCGC	2 cut(s)	106, 314
Cfr10I	RCCGGY	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	61
CseI	GACGC	1 cut(s)	159
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	3 cut(s)	32, 132, 225
CviKI_1	RGCY	3 cut(s)	32, 132, 225
DdeI	CTNAG	3 cut(s)	33, 182, 221
Eco130I	CCWWGG	1 cut(s)	226
Eco47I	GGWCC	1 cut(s)	61
Eco88I	CYCGRG	2 cut(s)	95, 133
EcoT14I	CCWWGG	1 cut(s)	226
ErhI	CCWWGG	1 cut(s)	226
FaeI	CATG	1 cut(s)	199
FaiI	YATR	1 cut(s)	197
FatI	CATG	1 cut(s)	195
GlaI	GCGC	2 cut(s)	105, 313
GsuI	CTGGAG	1 cut(s)	92
HapII	CCGG	1 cut(s)	300
HgaI	GACGC	1 cut(s)	159
HhaI	GCGC	2 cut(s)	106, 314
Hin1II	CATG	1 cut(s)	199
Hin6I	GCGC	2 cut(s)	104, 312
HinP1I	GCGC	2 cut(s)	104, 312
HinfI	GANTC	4 cut(s)	50, 136, 164, 254
HpaII	CCGG	1 cut(s)	300
HphI	GGTGA	1 cut(s)	260
Hpy188I	TCNGA	3 cut(s)	49, 169, 183
Hpy188III	TCNNGA	4 cut(s)	13, 54, 147, 338
HpyAV	CCTTC	1 cut(s)	335
HpyCH4V	TGCA	1 cut(s)	115
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 112, 222, 309
HpyF3I	CTNAG	3 cut(s)	33, 182, 221
Hsp92II	CATG	1 cut(s)	199
HspAI	GCGC	2 cut(s)	104, 312
LmnI	GCTCC	1 cut(s)	111
LpnPI	CCDG	6 cut(s)	101, 122, 203, 233, 313, 322
MaeIII	GTNAC	2 cut(s)	137, 161
MboII	GAAGA	2 cut(s)	263, 310
MluCI	AATT	1 cut(s)	17
MlyI	GAGTC	2 cut(s)	145, 158
MmeI	TCCRAC	1 cut(s)	282
MnlI	CCTC	2 cut(s)	104, 154
MspA1I	CMGCKG	1 cut(s)	32
MspI	CCGG	1 cut(s)	300
MvnI	CGCG	2 cut(s)	104, 153
MwoI	GCNNNNNNNGC	4 cut(s)	29, 112, 222, 309
NlaIII	CATG	1 cut(s)	199
NlaIV	GGNNCC	1 cut(s)	92
NmuCI	GTSAC	2 cut(s)	137, 161
PaeR7I	CTCGAG	2 cut(s)	95, 133
PfeI	GAWTC	2 cut(s)	50, 254
PleI	GAGTC	2 cut(s)	144, 158
PpsI	GAGTC	2 cut(s)	144, 158
PspN4I	GGNNCC	1 cut(s)	92
PspPI	GGNCC	1 cut(s)	61
PspXI	VCTCGAGB	2 cut(s)	95, 133
PvuII	CAGCTG	1 cut(s)	32
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	2 cut(s)	145, 158
SetI	ASST	4 cut(s)	34, 96, 222, 346
SfcI	CTRYAG	1 cut(s)	211
Sfr274I	CTCGAG	2 cut(s)	95, 133
SgrAI	CRCCGGYG	1 cut(s)	299
SinI	GGWCC	1 cut(s)	61
SlaI	CTCGAG	2 cut(s)	95, 133
SmlI	CTYRAG	3 cut(s)	95, 133, 145
SmoI	CTYRAG	3 cut(s)	95, 133, 145
Sse9I	AATT	1 cut(s)	17
SsiI	CCGC	1 cut(s)	64
StyI	CCWWGG	1 cut(s)	226
TaqI	TCGA	3 cut(s)	96, 134, 346
TasI	AATT	1 cut(s)	17
TfiI	GAWTC	2 cut(s)	50, 254
TseFI	GTSAC	2 cut(s)	137, 161
Tsp45I	GTSAC	2 cut(s)	137, 161
VpaK11BI	GGWCC	1 cut(s)	61
XapI	RAATTY	1 cut(s)	17
XhoI	CTCGAG	2 cut(s)	95, 133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.