pycom04g20210

cell redox homeostasis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Reverse (-)
21754732 .. 21755164
433 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 342 bp
ATGGAGATGGCGAGGAAGAATTGTGGGGTTTTGATACGAGAGACGATGATCGGGATTGGGATTGGCAATCGCTATAACCCCCGAATCCCAATCACAGGTCGTCTTCTTCATCATCACCGTACGGTCCAAACCCTAGCCCCCCCAAATTCAATGCCAACAACCACCGCAGCAGCAGCATCTGCCATTCCTTCCTCCAAGGCATCCGCCTCCTCCTTGGCCTCACTCCCAGCCAGGGTCTCTGCCTCCGGTGCACTCTCGGCCTCGGCCTTAGGCCCAGGCTCAAAACTTCTGTTTCCGAGTCCCCAAGACATGATCGATCTTGAAGGAAAAGAAGGAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04621 ko05418 map04621 map05418
Pfam Domains
Protein Families
Thioredoxin

Protein Analysis

114

Amino Acids

11.66

Weight (kDa)

10.16

Isoelectric Point (pI)

29.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 165, 204
AcsI RAATTY 1 cut(s) 145
AfaI GTAC 1 cut(s) 121
AfiI CCNNNNNNNGG 2 cut(s) 95, 232
AgsI TTSAA 2 cut(s) 150, 323
AjnI CCWGG 2 cut(s) 230, 274
Alw21I GWGCWC 1 cut(s) 253
Alw26I GTCTC 2 cut(s) 35, 241
Alw44I GTGCAC 1 cut(s) 249
AlwNI CAGNNNCTG 1 cut(s) 179
AoxI GGCC 4 cut(s) 216, 258, 264, 271
ApaLI GTGCAC 1 cut(s) 249
ApeKI GCWGC 3 cut(s) 167, 170, 173
ApoI RAATTY 1 cut(s) 145
AspS9I GGNCC 2 cut(s) 124, 272
AsuHPI GGTGA 1 cut(s) 107
AvaII GGWCC 1 cut(s) 124
AxyI CCTNAGG 1 cut(s) 268
BaeGI GKGCMC 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 95
Bbv12I GWGCWC 1 cut(s) 253
BbvI GCAGC 3 cut(s) 179, 182, 185
BciT130I CCWGG 2 cut(s) 232, 276
BcoDI GTCTC 2 cut(s) 35, 241
BfaI CTAG 1 cut(s) 134
BisI GCNGC 3 cut(s) 168, 171, 174
BlsI GCNGC 3 cut(s) 169, 172, 175
Bme1390I CCNGG 2 cut(s) 232, 276
Bme18I GGWCC 1 cut(s) 124
BmgT120I GGNCC 2 cut(s) 124, 272
BmrFI CCNGG 2 cut(s) 232, 276
BmsI GCATC 2 cut(s) 185, 209
BpiI GAAGAC 1 cut(s) 95
Bsa29I ATCGAT 1 cut(s) 315
BsaI GGTCTC 1 cut(s) 241
BsaJI CCNNGG 5 cut(s) 195, 213, 231, 261, 274
BsaWI WCCGGW 1 cut(s) 245
Bsc4I CCNNNNNNNGG 2 cut(s) 95, 232
Bse21I CCTNAGG 1 cut(s) 268
BseBI CCWGG 2 cut(s) 232, 276
BseCI ATCGAT 1 cut(s) 315
BseDI CCNNGG 5 cut(s) 195, 213, 231, 261, 274
BseGI GGATG 1 cut(s) 200
BseLI CCNNNNNNNGG 2 cut(s) 95, 232
BseRI GAGGAG 1 cut(s) 199
BseSI GKGCMC 1 cut(s) 253
BseXI GCAGC 3 cut(s) 179, 182, 185
BseYI CCCAGC 1 cut(s) 226
BshFI GGCC 4 cut(s) 218, 260, 266, 273
BshVI ATCGAT 1 cut(s) 315
BsiHKAI GWGCWC 1 cut(s) 253
BsiSI CCGG 1 cut(s) 246
BsiWI CGTACG 1 cut(s) 119
BslFI GGGAC 1 cut(s) 285
BslI CCNNNNNNNGG 2 cut(s) 95, 232
BsmAI GTCTC 2 cut(s) 35, 241
BsmBI CGTCTC 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 285
BsnI GGCC 4 cut(s) 218, 260, 266, 273
Bso31I GGTCTC 1 cut(s) 241
Bsp1286I GDGCHC 1 cut(s) 253
Bsp143I GATC 3 cut(s) 48, 312, 316
BspACI CCGC 2 cut(s) 165, 204
BspANI GGCC 4 cut(s) 218, 260, 266, 273
BspDI ATCGAT 1 cut(s) 315
BspTNI GGTCTC 1 cut(s) 241
BssECI CCNNGG 5 cut(s) 195, 213, 231, 261, 274
BssMI GATC 3 cut(s) 48, 312, 316
BssT1I CCWWGG 2 cut(s) 195, 213
Bst2UI CCWGG 2 cut(s) 232, 276
Bst4CI ACNGT 2 cut(s) 119, 124
BstAPI GCANNNNNTGC 1 cut(s) 179
BstDEI CTNAG 1 cut(s) 268
BstF5I GGATG 1 cut(s) 200
BstKTI GATC 3 cut(s) 51, 315, 319
BstMAI GTCTC 2 cut(s) 35, 241
BstMBI GATC 3 cut(s) 48, 312, 316
BstMWI GCNNNNNNNGC 4 cut(s) 173, 179, 248, 257
BstNI CCWGG 2 cut(s) 232, 276
BstSCI CCNGG 2 cut(s) 230, 274
BstSLI GKGCMC 1 cut(s) 253
BstV1I GCAGC 3 cut(s) 179, 182, 185
BstV2I GAAGAC 1 cut(s) 95
Bsu15I ATCGAT 1 cut(s) 315
Bsu36I CCTNAGG 1 cut(s) 268
BsuRI GGCC 4 cut(s) 218, 260, 266, 273
BsuTUI ATCGAT 1 cut(s) 315
BtsCI GGATG 1 cut(s) 200
CaiI CAGNNNCTG 1 cut(s) 179
Cfr13I GGNCC 2 cut(s) 124, 272
ClaI ATCGAT 1 cut(s) 315
Csp6I GTAC 1 cut(s) 120
CviAII CATG 1 cut(s) 310
CviJI RGCY 7 cut(s) 137, 218, 230, 260, 266, 273, 279
CviKI_1 RGCY 7 cut(s) 137, 218, 230, 260, 266, 273, 279
CviQI GTAC 1 cut(s) 120
DdeI CTNAG 1 cut(s) 268
DpnI GATC 3 cut(s) 50, 314, 318
DpnII GATC 3 cut(s) 48, 312, 316
EciI GGCGGA 1 cut(s) 193
Eco130I CCWWGG 2 cut(s) 195, 213
Eco31I GGTCTC 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 124
Eco81I CCTNAGG 1 cut(s) 268
EcoRII CCWGG 2 cut(s) 230, 274
EcoT14I CCWWGG 2 cut(s) 195, 213
ErhI CCWWGG 2 cut(s) 195, 213
Esp3I CGTCTC 1 cut(s) 35
FaeI CATG 1 cut(s) 313
FaiI YATR 3 cut(s) 75, 311, 340
FaqI GGGAC 1 cut(s) 285
FatI CATG 1 cut(s) 309
Fnu4HI GCNGC 3 cut(s) 168, 171, 174
FokI GGATG 1 cut(s) 187
Fsp4HI GCNGC 3 cut(s) 168, 171, 174
FspBI CTAG 1 cut(s) 134
GluI GCNGC 3 cut(s) 168, 171, 174
GsaI CCCAGC 1 cut(s) 230
HaeIII GGCC 4 cut(s) 218, 260, 266, 273
HapII CCGG 1 cut(s) 246
Hin1II CATG 1 cut(s) 313
HinfI GANTC 2 cut(s) 84, 298
HpaII CCGG 1 cut(s) 246
HphI GGTGA 1 cut(s) 107
Hpy166II GTNNAC 1 cut(s) 251
Hpy188I TCNGA 1 cut(s) 297
Hpy188III TCNNGA 2 cut(s) 52, 320
Hpy8I GTNNAC 1 cut(s) 251
HpyAV CCTTC 3 cut(s) 198, 317, 326
HpyCH4III ACNGT 2 cut(s) 119, 124
HpyCH4V TGCA 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 4 cut(s) 173, 179, 248, 257
HpyF3I CTNAG 1 cut(s) 268
Hsp92II CATG 1 cut(s) 313
Kzo9I GATC 3 cut(s) 48, 312, 316
LpnPI CCDG 7 cut(s) 81, 217, 240, 244, 259, 261, 288
Lsp1109I GCAGC 3 cut(s) 179, 182, 185
LweI GCATC 2 cut(s) 185, 209
MaeI CTAG 1 cut(s) 134
MalI GATC 3 cut(s) 50, 314, 318
MboI GATC 3 cut(s) 48, 312, 316
MboII GAAGA 3 cut(s) 28, 95, 98
MhlI GDGCHC 1 cut(s) 253
MluCI AATT 2 cut(s) 19, 145
MlyI GAGTC 1 cut(s) 307
MnlI CCTC 7 cut(s) 6, 202, 217, 220, 229, 253, 271
MspI CCGG 1 cut(s) 246
MspR9I CCNGG 2 cut(s) 232, 276
MvaI CCWGG 2 cut(s) 232, 276
MwoI GCNNNNNNNGC 4 cut(s) 173, 179, 248, 257
NdeII GATC 3 cut(s) 48, 312, 316
NlaIII CATG 1 cut(s) 313
NmeAIII GCCGAG 2 cut(s) 236, 242
PfeI GAWTC 1 cut(s) 84
Pfl23II CGTACG 1 cut(s) 119
PkrI GCNGC 3 cut(s) 169, 172, 175
PleI GAGTC 1 cut(s) 306
PpsI GAGTC 1 cut(s) 306
Psp6I CCWGG 2 cut(s) 230, 274
PspFI CCCAGC 1 cut(s) 226
PspGI CCWGG 2 cut(s) 230, 274
PspLI CGTACG 1 cut(s) 119
PspPI GGNCC 2 cut(s) 124, 272
PstNI CAGNNNCTG 1 cut(s) 179
RsaI GTAC 1 cut(s) 121
RsaNI GTAC 1 cut(s) 120
SatI GCNGC 3 cut(s) 168, 171, 174
Sau3AI GATC 3 cut(s) 48, 312, 316
Sau96I GGNCC 2 cut(s) 124, 272
SchI GAGTC 1 cut(s) 307
ScrFI CCNGG 2 cut(s) 232, 276
SduI GDGCHC 1 cut(s) 253
SetI ASST 1 cut(s) 100
SfaNI GCATC 2 cut(s) 185, 209
SinI GGWCC 1 cut(s) 124
Sse9I AATT 2 cut(s) 19, 145
SsiI CCGC 2 cut(s) 165, 204
SspMI CTAG 1 cut(s) 134
StyD4I CCNGG 2 cut(s) 230, 274
StyI CCWWGG 2 cut(s) 195, 213
TaaI ACNGT 2 cut(s) 119, 124
TaqI TCGA 1 cut(s) 315
TasI AATT 2 cut(s) 19, 145
TfiI GAWTC 1 cut(s) 84
TseI GCWGC 3 cut(s) 167, 170, 173
TspDTI ATGAA 1 cut(s) 98
VneI GTGCAC 1 cut(s) 249
VpaK11BI GGWCC 1 cut(s) 124
XapI RAATTY 1 cut(s) 145
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.