pycom04g20760

Translational activator

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Reverse (-)
22194374 .. 22194592
219 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 219 bp
ATGCTAACTTTCCATAAATCTTACTGGCTACTATTGGATTGCAACTGCAGGCCTCTTATCCGGATAATAGGTGACCGGTTCCCTTGGCAAGTGAAGAGTGCTATTTTATCTACCTTGACAATTATGATAAGAAAGGGTGGAATGGCGCTGAAACCTTTTCTTCCTCAGCTTCAGACAACATTTGTAAAGTGTCTACAGGATAGCACAAGGTTGGCTTAG

Protein Analysis

73

Amino Acids

8.34

Weight (kDa)

10.05

Isoelectric Point (pI)

46.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 193
AccIII TCCGGA 1 cut(s) 60
AcuI CTGAAG 1 cut(s) 155
AgeI ACCGGT 1 cut(s) 75
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
Aor13HI TCCGGA 1 cut(s) 60
AoxI GGCC 1 cut(s) 50
AsiGI ACCGGT 1 cut(s) 75
AspLEI GCGC 1 cut(s) 148
AsuHPI GGTGA 1 cut(s) 83
BbvCI CCTCAGC 1 cut(s) 165
BfmI CTRYAG 2 cut(s) 46, 194
BfoI RGCGCY 1 cut(s) 149
BmiI GGNNCC 1 cut(s) 80
Bpu10I CCTNAGC 1 cut(s) 165
BsaJI CCNNGG 1 cut(s) 83
BsaWI WCCGGW 2 cut(s) 60, 75
Bse118I RCCGGY 1 cut(s) 75
Bse1I ACTGG 1 cut(s) 29
BseAI TCCGGA 1 cut(s) 60
BseDI CCNNGG 1 cut(s) 83
BseMII CTCAG 1 cut(s) 179
BseNI ACTGG 1 cut(s) 29
BshFI GGCC 1 cut(s) 52
BshTI ACCGGT 1 cut(s) 75
BsiSI CCGG 2 cut(s) 61, 76
BsnI GGCC 1 cut(s) 52
Bsp13I TCCGGA 1 cut(s) 60
BspANI GGCC 1 cut(s) 52
BspCNI CTCAG 1 cut(s) 178
BspEI TCCGGA 1 cut(s) 60
BspLI GGNNCC 1 cut(s) 80
BspMAI CTGCAG 1 cut(s) 50
BsrFI RCCGGY 1 cut(s) 75
BsrI ACTGG 1 cut(s) 29
BssAI RCCGGY 1 cut(s) 75
BssECI CCNNGG 1 cut(s) 83
BssT1I CCWWGG 1 cut(s) 83
Bst6I CTCTTC 1 cut(s) 89
BstC8I GCNNGC 1 cut(s) 50
BstDEI CTNAG 2 cut(s) 165, 216
BstEII GGTNACC 1 cut(s) 71
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 1 cut(s) 148
BstPI GGTNACC 1 cut(s) 71
BstSFI CTRYAG 2 cut(s) 46, 194
BsuRI GGCC 1 cut(s) 52
Cac8I GCNNGC 1 cut(s) 50
CfoI GCGC 1 cut(s) 148
Cfr10I RCCGGY 1 cut(s) 75
CspAI ACCGGT 1 cut(s) 75
CviJI RGCY 4 cut(s) 28, 52, 169, 215
CviKI_1 RGCY 4 cut(s) 28, 52, 169, 215
DdeI CTNAG 2 cut(s) 165, 216
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
Eco130I CCWWGG 1 cut(s) 83
Eco147I AGGCCT 1 cut(s) 52
Eco57I CTGAAG 1 cut(s) 155
Eco91I GGTNACC 1 cut(s) 71
EcoO65I GGTNACC 1 cut(s) 71
EcoT14I CCWWGG 1 cut(s) 83
ErhI CCWWGG 1 cut(s) 83
FaiI YATR 2 cut(s) 15, 125
FalI AAGNNNNNCTT 1 cut(s) 199
FblI GTMKAC 1 cut(s) 193
GlaI GCGC 1 cut(s) 147
HaeII RGCGCY 1 cut(s) 149
HaeIII GGCC 1 cut(s) 52
HapII CCGG 2 cut(s) 61, 76
HhaI GCGC 1 cut(s) 148
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HpaII CCGG 2 cut(s) 61, 76
HphI GGTGA 1 cut(s) 83
Hpy166II GTNNAC 1 cut(s) 194
Hpy188I TCNGA 1 cut(s) 174
Hpy188III TCNNGA 1 cut(s) 61
Hpy8I GTNNAC 1 cut(s) 194
HpyCH4V TGCA 2 cut(s) 42, 48
HpyF3I CTNAG 2 cut(s) 165, 216
HspAI GCGC 1 cut(s) 146
Kpn2I TCCGGA 1 cut(s) 60
LpnPI CCDG 5 cut(s) 10, 34, 74, 89, 182
MaeIII GTNAC 1 cut(s) 71
MboII GAAGA 2 cut(s) 106, 152
MluCI AATT 1 cut(s) 120
MnlI CCTC 2 cut(s) 63, 174
MroI TCCGGA 1 cut(s) 60
MspI CCGG 2 cut(s) 61, 76
NlaIV GGNNCC 1 cut(s) 80
NmuCI GTSAC 1 cut(s) 71
PceI AGGCCT 1 cut(s) 52
PinAI ACCGGT 1 cut(s) 75
PspEI GGTNACC 1 cut(s) 71
PspN4I GGNNCC 1 cut(s) 80
PstI CTGCAG 1 cut(s) 50
SetI ASST 5 cut(s) 73, 116, 157, 171, 212
SfcI CTRYAG 2 cut(s) 46, 194
SgeI CNNG 8 cut(s) 37, 61, 73, 88, 96, 101, 127, 209
Sse9I AATT 1 cut(s) 120
SseBI AGGCCT 1 cut(s) 52
StuI AGGCCT 1 cut(s) 52
StyI CCWWGG 1 cut(s) 83
TasI AATT 1 cut(s) 120
TseFI GTSAC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 71
XmiI GTMKAC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.