pycom04g20950

Encoded by

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Forward (+)
22354186 .. 22354915
730 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 300 bp
ATGAAGTGCGCAAAGCTCAAAGAAGTAAATCCTACTTTGATTGCTAGAGTGGGGAAAGTACTTTTTCGTAGGAGCCCTTCAATTGACATGGAATCCATCAGAAAAAATTTGTGTCCTGAAATCTTGAAACAATTGAGGAAATCATTTTATACAAACATTCCTGTTTCATATAAGGAAAATATTGTGAACGAAGTCGTCCCAAAAATTGGAGTTGATTTCGACCACTCATCTATGTCCTCCTCGTATAGTTGTCTGATTCCACCAGACCAGATGCAACTCTCTCCTGCAAATGCCGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.15

Weight (kDa)

9.3

Isoelectric Point (pI)

67.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7903 PF25475 1 - 76 1.1e-23 Domain of unknown function (DUF7903)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 10
AccB7I CCANNNNNTGG 1 cut(s) 206
AcsI RAATTY 1 cut(s) 106
AfaI GTAC 1 cut(s) 60
AfiI CCNNNNNNNGG 1 cut(s) 206
AgsI TTSAA 2 cut(s) 81, 127
AluBI AGCT 1 cut(s) 16
AluI AGCT 1 cut(s) 16
ApoI RAATTY 1 cut(s) 106
AspLEI GCGC 1 cut(s) 11
BanII GRGCYC 1 cut(s) 77
BarI GAAGNNNNNNTAC 2 cut(s) 61, 93
BccI CCATC 1 cut(s) 104
BceAI ACGGC 1 cut(s) 278
BfaI CTAG 1 cut(s) 45
BmcAI AGTACT 1 cut(s) 60
BmiI GGNNCC 1 cut(s) 74
BmsI GCATC 1 cut(s) 261
Bsc4I CCNNNNNNNGG 1 cut(s) 206
BseLI CCNNNNNNNGG 1 cut(s) 206
BseRI GAGGAG 1 cut(s) 229
BslFI GGGAC 1 cut(s) 182
BslI CCNNNNNNNGG 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 182
Bsp1286I GDGCHC 1 cut(s) 77
BspLI GGNNCC 1 cut(s) 74
BstHHI GCGC 1 cut(s) 11
CfoI GCGC 1 cut(s) 11
Csp6I GTAC 1 cut(s) 59
CviAII CATG 1 cut(s) 88
CviJI RGCY 2 cut(s) 16, 75
CviKI_1 RGCY 2 cut(s) 16, 75
CviQI GTAC 1 cut(s) 59
Eco24I GRGCYC 1 cut(s) 77
EcoT38I GRGCYC 1 cut(s) 77
FaeI CATG 1 cut(s) 91
FaiI YATR 6 cut(s) 89, 150, 169, 171, 233, 246
FaqI GGGAC 1 cut(s) 182
FatI CATG 1 cut(s) 87
FriOI GRGCYC 1 cut(s) 77
FspBI CTAG 1 cut(s) 45
FspI TGCGCA 1 cut(s) 10
GlaI GCGC 1 cut(s) 10
HhaI GCGC 1 cut(s) 11
Hin1II CATG 1 cut(s) 91
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HinfI GANTC 2 cut(s) 92, 256
Hpy166II GTNNAC 1 cut(s) 187
Hpy188I TCNGA 2 cut(s) 101, 255
Hpy188III TCNNGA 2 cut(s) 116, 124
Hpy8I GTNNAC 1 cut(s) 187
HpyAV CCTTC 1 cut(s) 87
HpyCH4V TGCA 2 cut(s) 274, 287
Hsp92II CATG 1 cut(s) 91
HspAI GCGC 1 cut(s) 9
LmnI GCTCC 1 cut(s) 72
LpnPI CCDG 4 cut(s) 129, 174, 276, 281
LweI GCATC 1 cut(s) 261
MaeI CTAG 1 cut(s) 45
MfeI CAATTG 2 cut(s) 81, 131
MhlI GDGCHC 1 cut(s) 77
MluCI AATT 4 cut(s) 81, 106, 131, 204
MnlI CCTC 3 cut(s) 129, 247, 250
MunI CAATTG 2 cut(s) 81, 131
NlaIII CATG 1 cut(s) 91
NlaIV GGNNCC 1 cut(s) 74
NsbI TGCGCA 1 cut(s) 10
PfeI GAWTC 2 cut(s) 92, 256
PflMI CCANNNNNTGG 1 cut(s) 206
PspN4I GGNNCC 1 cut(s) 74
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
ScaI AGTACT 1 cut(s) 60
SduI GDGCHC 1 cut(s) 77
SetI ASST 1 cut(s) 18
SfaNI GCATC 1 cut(s) 261
SgeI CNNG 9 cut(s) 57, 100, 128, 136, 173, 253, 275, 280, 296
Sse9I AATT 4 cut(s) 81, 106, 131, 204
SspI AATATT 1 cut(s) 181
SspMI CTAG 1 cut(s) 45
TaqI TCGA 1 cut(s) 219
TasI AATT 4 cut(s) 81, 106, 131, 204
TatI WGTACW 1 cut(s) 58
TfiI GAWTC 2 cut(s) 92, 256
TspDTI ATGAA 2 cut(s) 17, 156
Van91I CCANNNNNTGG 1 cut(s) 206
XapI RAATTY 1 cut(s) 106
XspI CTAG 1 cut(s) 45
ZrmI AGTACT 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.