pycom04g20990
ERF Family

Belongs to the calycin superfamily. Lipocalin family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Forward (+)
22371240 .. 22371821
582 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 369 bp
ATGCTTCCATCCATTTATGTGGCGAACACACCGGATGACTACATATTTGTGTACTGTGGAAGGAATGACGCATGGGATGGAAACGGTGGTGCTGTTGTATATACAAGGAGTTCAGTTTTGCAAGAACGCATTGTTCCTGACCTTGAAAGAGCAGCTAAAAGTAGGGGGGAAGTTGAAAAGGGTGAACAGTCTGAGTTGACATTGTTCCAAAAGTTACTGGAAGGGTTTAACGAGCTTAAACAAGACGAGGAGAACTTCTTGAGAGGTCTTCTCAAAGAAGAGATGGATCAGCTGAGCGAGCTAAAAATGGAAGCAGGTGAAGCAGAAAAACTTTTTGGACAAACTCTTCCGCTGAAGAAGCTAAAATAG

Protein Analysis

123

Amino Acids

13.86

Weight (kDa)

4.71

Isoelectric Point (pI)

32.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VDE PF07137 9 - 56 4.3e-11 VDE lipocalin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 305
Acc36I ACCTGC 1 cut(s) 305
AciI CCGC 1 cut(s) 350
AclWI GGATC 1 cut(s) 294
AfaI GTAC 1 cut(s) 53
AgsI TTSAA 2 cut(s) 146, 176
AjuI GAANNNNNNNTTGG 2 cut(s) 318, 350
AluBI AGCT 5 cut(s) 155, 235, 292, 301, 361
AluI AGCT 5 cut(s) 155, 235, 292, 301, 361
AlwI GGATC 1 cut(s) 294
ApeKI GCWGC 1 cut(s) 152
ArsI GACNNNNNNTTYG 2 cut(s) 29, 61
AsuHPI GGTGA 2 cut(s) 194, 329
BbsI GAAGAC 1 cut(s) 260
BbvI GCAGC 1 cut(s) 164
BccI CCATC 3 cut(s) 16, 71, 277
BfuAI ACCTGC 1 cut(s) 305
BisI GCNGC 1 cut(s) 153
BlpI GCTNAGC 1 cut(s) 293
BlsI GCNGC 1 cut(s) 154
BpiI GAAGAC 1 cut(s) 260
BplI GAGNNNNNCTC 2 cut(s) 255, 287
Bpu1102I GCTNAGC 1 cut(s) 293
BpuEI CTTGAG 1 cut(s) 280
BsaWI WCCGGW 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 222
BseGI GGATG 3 cut(s) 8, 40, 82
BseMII CTCAG 2 cut(s) 183, 284
BseNI ACTGG 1 cut(s) 222
BseRI GAGGAG 1 cut(s) 263
BseXI GCAGC 1 cut(s) 164
BsiSI CCGG 1 cut(s) 32
Bsp143I GATC 1 cut(s) 286
Bsp1720I GCTNAGC 1 cut(s) 293
BspACI CCGC 1 cut(s) 350
BspCNI CTCAG 2 cut(s) 184, 285
BspMI ACCTGC 1 cut(s) 305
BspPI GGATC 1 cut(s) 294
BsrI ACTGG 1 cut(s) 222
BssMI GATC 1 cut(s) 286
Bst4CI ACNGT 3 cut(s) 56, 86, 189
Bst6I CTCTTC 2 cut(s) 273, 351
BstC8I GCNNGC 1 cut(s) 299
BstDEI CTNAG 2 cut(s) 192, 293
BstF5I GGATG 3 cut(s) 8, 40, 82
BstKTI GATC 1 cut(s) 289
BstMBI GATC 1 cut(s) 286
BstMWI GCNNNNNNNGC 3 cut(s) 298, 320, 358
BstV1I GCAGC 1 cut(s) 164
BstV2I GAAGAC 1 cut(s) 260
BstXI CCANNNNNNTGG 1 cut(s) 19
BtsCI GGATG 3 cut(s) 8, 40, 82
BveI ACCTGC 1 cut(s) 305
Cac8I GCNNGC 1 cut(s) 299
CseI GACGC 1 cut(s) 77
Csp6I GTAC 1 cut(s) 52
CviAII CATG 1 cut(s) 72
CviJI RGCY 5 cut(s) 155, 235, 292, 301, 361
CviKI_1 RGCY 5 cut(s) 155, 235, 292, 301, 361
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 2 cut(s) 192, 293
DpnI GATC 1 cut(s) 288
DpnII GATC 1 cut(s) 286
Eam1104I CTCTTC 2 cut(s) 273, 351
EarI CTCTTC 2 cut(s) 273, 351
FaeI CATG 1 cut(s) 75
FaiI YATR 5 cut(s) 18, 44, 73, 100, 102
FatI CATG 1 cut(s) 71
Fnu4HI GCNGC 1 cut(s) 153
FokI GGATG 2 cut(s) 47, 89
Fsp4HI GCNGC 1 cut(s) 153
GluI GCNGC 1 cut(s) 153
HapII CCGG 1 cut(s) 32
HgaI GACGC 1 cut(s) 77
Hin1II CATG 1 cut(s) 75
HincII GTYRAC 1 cut(s) 198
HindII GTYRAC 1 cut(s) 198
HpaII CCGG 1 cut(s) 32
HphI GGTGA 2 cut(s) 194, 329
Hpy166II GTNNAC 3 cut(s) 52, 185, 198
Hpy188I TCNGA 1 cut(s) 193
Hpy188III TCNNGA 2 cut(s) 137, 259
Hpy8I GTNNAC 3 cut(s) 52, 185, 198
HpyAV CCTTC 2 cut(s) 54, 215
HpyCH4III ACNGT 3 cut(s) 56, 86, 189
HpyCH4V TGCA 1 cut(s) 121
HpyF10VI GCNNNNNNNGC 3 cut(s) 298, 320, 358
HpyF3I CTNAG 2 cut(s) 192, 293
Hsp92II CATG 1 cut(s) 75
Kzo9I GATC 1 cut(s) 286
LpnPI CCDG 4 cut(s) 45, 150, 203, 300
Lsp1109I GCAGC 1 cut(s) 164
MaeIII GTNAC 1 cut(s) 213
MalI GATC 1 cut(s) 288
MboI GATC 1 cut(s) 286
MboII GAAGA 4 cut(s) 260, 290, 338, 367
MnlI CCTC 2 cut(s) 241, 257
MseI TTAA 2 cut(s) 228, 237
MslI CAYNNNNRTG 2 cut(s) 17, 47
MspA1I CMGCKG 2 cut(s) 292, 352
MspI CCGG 1 cut(s) 32
MwoI GCNNNNNNNGC 3 cut(s) 298, 320, 358
NdeII GATC 1 cut(s) 286
NlaIII CATG 1 cut(s) 75
PaqCI CACCTGC 1 cut(s) 305
PkrI GCNGC 1 cut(s) 154
PvuII CAGCTG 1 cut(s) 292
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
RseI CAYNNNNRTG 2 cut(s) 17, 47
SaqAI TTAA 2 cut(s) 228, 237
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 1 cut(s) 286
SetI ASST 8 cut(s) 144, 157, 237, 268, 294, 303, 319, 363
SmiMI CAYNNNNRTG 2 cut(s) 17, 47
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
SsiI CCGC 1 cut(s) 350
TaaI ACNGT 3 cut(s) 56, 86, 189
TatI WGTACW 1 cut(s) 51
Tru1I TTAA 2 cut(s) 228, 237
Tru9I TTAA 2 cut(s) 228, 237
TseI GCWGC 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.