pycom04g21430

CBS domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
N/A
Physical Location & Seq
Reverse (-)
22596472 .. 22596891
420 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 420 bp
ATGATGAAGCATGGTGTAAAGCGTCTTATTGTTCGAAAGAGTGTGGTATGGAAAGGCATGAGCAAACGTTTCTCTATGATCTATAGTGGTAAATGGCTCAAGAACATAGATGCTAGTGGCAGCAGCAATACCCTTGCTGCCAATCCCAATCGGCCTTCCTCATCTTCCACTAGCAGTACCCGTGACAAGTTTTGCTGTCTCTCAAGAGAAGATGTCATCCGTTTCCTGATTGGTTGCCTAGGTGCCCTAGCACCTCTTCCACTCTCCTCTATCTCCTCTATTGGAGCAATTAACCCAAACTACCAATTTGTTGAAGCCTCGGCTGCAGCCATTGAAGCCACTAAAAAGCTTCCGGACGACCCTAGTGCAGTTGCTGTTGTCGAACAGACACAGGATGATGAGTATAAGATCATCGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBS

Protein Analysis

140

Amino Acids

15.04

Weight (kDa)

9.4

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 242
AccIII TCCGGA 1 cut(s) 352
AclI AACGTT 1 cut(s) 67
AfaI GTAC 1 cut(s) 178
AgsI TTSAA 2 cut(s) 314, 335
AluBI AGCT 1 cut(s) 349
AluI AGCT 1 cut(s) 349
Alw26I GTCTC 1 cut(s) 203
AlwNI CAGNNNCTG 1 cut(s) 374
Aor13HI TCCGGA 1 cut(s) 352
AoxI GGCC 1 cut(s) 152
ApeKI GCWGC 5 cut(s) 120, 123, 137, 323, 326
AspA2I CCTAGG 1 cut(s) 238
AsuII TTCGAA 1 cut(s) 34
AvrII CCTAGG 1 cut(s) 238
BaeGI GKGCMC 1 cut(s) 247
BanI GGYRCC 1 cut(s) 242
BbvI GCAGC 5 cut(s) 124, 132, 135, 310, 338
BcgI CGANNNNNNTGC 2 cut(s) 347, 381
BcoDI GTCTC 1 cut(s) 203
BfaI CTAG 5 cut(s) 114, 171, 239, 248, 363
BfmI CTRYAG 2 cut(s) 82, 324
BisI GCNGC 5 cut(s) 121, 124, 138, 324, 327
BlnI CCTAGG 1 cut(s) 238
BlsI GCNGC 5 cut(s) 122, 125, 139, 325, 328
BmiI GGNNCC 1 cut(s) 244
BmsI GCATC 1 cut(s) 100
Bpu14I TTCGAA 1 cut(s) 34
BpuEI CTTGAG 2 cut(s) 83, 187
BsaJI CCNNGG 2 cut(s) 238, 318
BsaWI WCCGGW 1 cut(s) 352
BseAI TCCGGA 1 cut(s) 352
BseDI CCNNGG 2 cut(s) 238, 318
BseGI GGATG 2 cut(s) 216, 400
BseRI GAGGAG 2 cut(s) 256, 265
BseSI GKGCMC 1 cut(s) 247
BseXI GCAGC 5 cut(s) 124, 132, 135, 310, 338
BsgI GTGCAG 1 cut(s) 387
BshFI GGCC 1 cut(s) 154
BshNI GGYRCC 1 cut(s) 242
BsiSI CCGG 1 cut(s) 353
BsmAI GTCTC 1 cut(s) 203
BsnI GGCC 1 cut(s) 154
Bsp119I TTCGAA 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 247
Bsp13I TCCGGA 1 cut(s) 352
Bsp143I GATC 2 cut(s) 78, 408
BspANI GGCC 1 cut(s) 154
BspEI TCCGGA 1 cut(s) 352
BspLI GGNNCC 1 cut(s) 244
BspMAI CTGCAG 1 cut(s) 328
BspT104I TTCGAA 1 cut(s) 34
BspT107I GGYRCC 1 cut(s) 242
BssECI CCNNGG 2 cut(s) 238, 318
BssMI GATC 2 cut(s) 78, 408
BssT1I CCWWGG 1 cut(s) 238
Bst6I CTCTTC 1 cut(s) 261
BstBI TTCGAA 1 cut(s) 34
BstF5I GGATG 2 cut(s) 216, 400
BstKTI GATC 2 cut(s) 81, 411
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 2 cut(s) 78, 408
BstMWI GCNNNNNNNGC 2 cut(s) 323, 335
BstSFI CTRYAG 2 cut(s) 82, 324
BstSLI GKGCMC 1 cut(s) 247
BstV1I GCAGC 5 cut(s) 124, 132, 135, 310, 338
BsuRI GGCC 1 cut(s) 154
BtsCI GGATG 2 cut(s) 216, 400
CaiI CAGNNNCTG 1 cut(s) 374
CseI GACGC 1 cut(s) 11
Csp6I GTAC 1 cut(s) 177
CviAII CATG 2 cut(s) 11, 58
CviJI RGCY 7 cut(s) 97, 154, 317, 323, 329, 338, 349
CviKI_1 RGCY 7 cut(s) 97, 154, 317, 323, 329, 338, 349
CviQI GTAC 1 cut(s) 177
DpnI GATC 2 cut(s) 80, 410
DpnII GATC 2 cut(s) 78, 408
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
Eco130I CCWWGG 1 cut(s) 238
EcoT14I CCWWGG 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 238
FaeI CATG 2 cut(s) 14, 61
FaiI YATR 7 cut(s) 12, 49, 59, 77, 84, 107, 405
FatI CATG 2 cut(s) 10, 57
Fnu4HI GCNGC 5 cut(s) 121, 124, 138, 324, 327
FokI GGATG 2 cut(s) 203, 407
Fsp4HI GCNGC 5 cut(s) 121, 124, 138, 324, 327
FspBI CTAG 5 cut(s) 114, 171, 239, 248, 363
GluI GCNGC 5 cut(s) 121, 124, 138, 324, 327
HaeIII GGCC 1 cut(s) 154
HapII CCGG 1 cut(s) 353
HgaI GACGC 1 cut(s) 11
Hin1II CATG 2 cut(s) 14, 61
HindIII AAGCTT 1 cut(s) 347
HpaII CCGG 1 cut(s) 353
Hpy188I TCNGA 1 cut(s) 416
Hpy188III TCNNGA 4 cut(s) 100, 204, 226, 353
HpyAV CCTTC 1 cut(s) 165
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 2 cut(s) 326, 368
HpyF10VI GCNNNNNNNGC 2 cut(s) 323, 335
HpySE526I ACGT 1 cut(s) 67
Hsp92II CATG 2 cut(s) 14, 61
Kpn2I TCCGGA 1 cut(s) 352
Kzo9I GATC 2 cut(s) 78, 408
LmnI GCTCC 1 cut(s) 284
LpnPI CCDG 3 cut(s) 239, 366, 377
Lsp1109I GCAGC 5 cut(s) 124, 132, 135, 310, 338
LweI GCATC 1 cut(s) 100
MaeI CTAG 5 cut(s) 114, 171, 239, 248, 363
MaeII ACGT 1 cut(s) 67
MaeIII GTNAC 1 cut(s) 182
MalI GATC 2 cut(s) 80, 410
MboI GATC 2 cut(s) 78, 408
MboII GAAGA 3 cut(s) 156, 221, 248
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 2 cut(s) 288, 305
MnlI CCTC 5 cut(s) 169, 264, 277, 286, 328
MroI TCCGGA 1 cut(s) 352
MseI TTAA 1 cut(s) 291
MspI CCGG 1 cut(s) 353
MwoI GCNNNNNNNGC 2 cut(s) 323, 335
NdeII GATC 2 cut(s) 78, 408
NlaIII CATG 2 cut(s) 14, 61
NlaIV GGNNCC 1 cut(s) 244
NmeAIII GCCGAG 1 cut(s) 299
NmuCI GTSAC 1 cut(s) 182
NspV TTCGAA 1 cut(s) 34
PkrI GCNGC 5 cut(s) 122, 125, 139, 325, 328
Psp1406I AACGTT 1 cut(s) 67
PspN4I GGNNCC 1 cut(s) 244
PstI CTGCAG 1 cut(s) 328
PstNI CAGNNNCTG 1 cut(s) 374
RsaI GTAC 1 cut(s) 178
RsaNI GTAC 1 cut(s) 177
SaqAI TTAA 1 cut(s) 291
SatI GCNGC 5 cut(s) 121, 124, 138, 324, 327
Sau3AI GATC 2 cut(s) 78, 408
SduI GDGCHC 1 cut(s) 247
SetI ASST 4 cut(s) 70, 244, 256, 351
SfaNI GCATC 1 cut(s) 100
SfcI CTRYAG 2 cut(s) 82, 324
SfuI TTCGAA 1 cut(s) 34
SmlI CTYRAG 2 cut(s) 98, 202
SmoI CTYRAG 2 cut(s) 98, 202
Sse9I AATT 2 cut(s) 288, 305
SspMI CTAG 5 cut(s) 114, 171, 239, 248, 363
StyI CCWWGG 1 cut(s) 238
TaiI ACGT 1 cut(s) 70
TaqI TCGA 2 cut(s) 34, 381
TasI AATT 2 cut(s) 288, 305
Tru1I TTAA 1 cut(s) 291
Tru9I TTAA 1 cut(s) 291
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 5 cut(s) 120, 123, 137, 323, 326
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 20
TspGWI ACGGA 1 cut(s) 209
XmaJI CCTAGG 1 cut(s) 238
XspI CTAG 5 cut(s) 114, 171, 239, 248, 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.