Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

1459802 .. 1461122

Gene Structure 1321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGATTGGCATAGATTTACTGCAGTTTAAATTTAAGTCTTCTAGCGATACTTATTCTAATTTCATCTTGCTCCAAAATTTGTTACAGGCTGTCTTTCAACGATATTTACGTCCTGAAAAGGACTATTTATCATTTTCTCTTATATACAATAACGGAAAGCGGTCTCTTGATCTGATTTGCAAGGACAAAGTTGAGGCGCAAGTGTGGATTGCAGGCCTTAAAGCACTCATTTCCTCTGGCAGAGGTGGGCGTTCGAAAATTGACGGATGGAGTGATGGAGGCCTCTACCTTGATGATGGCAAGGACTTGACATCAAATAGTCCTACTGATAGTTCTGCTAGTGGTGCACGAGATAGTGGCTCTCCAGAGATTTCTGTTAATTTCAAACCAAATACTTCGCCCAAGAGTTTTCCCCCTGAAAATTCTCCAGTTTCTGAGAGGTCACATGCTGCATCAGACCTGACAAATATGCAAGTTAAAGGATCTGGTTCAGATGCATTTCGAGTTAGTGTTTCAAGTGCTCCTAGCACTTCAAGTCATGGTTCTGGACAGGATGATTGTGAAGCTCTAGGTGATGTGTACATATGGGGTGAGGTTATTTGTGATAGTGTTGTTAAGGTTGGGGCTGATAAAAATGTGAATTATTTGAGCCCAAGATCAGATCGTTTGTGCTTGTCCCTAGGCCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005085 GO:0005086 GO:0005088 GO:0005488 GO:0005515 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0008150 GO:0008289 GO:0012505 GO:0016020 GO:0017016 GO:0017112 GO:0017137 GO:0019899 GO:0031267 GO:0035091 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0051020 GO:0065007 GO:0065009 GO:0070300 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRX BRX_N FYVE PH_12 RCC1

Protein Analysis

230

Amino Acids

24.7

Weight (kDa)

5.63

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PH_12	PF16457	38 - 77	9.8e-06	Pleckstrin homology domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	160
AclWI	GGATC	1 cut(s)	490
AcsI	RAATTY	3 cut(s)	29, 76, 421
AfaI	GTAC	1 cut(s)	581
AgsI	TTSAA	4 cut(s)	98, 385, 516, 534
AluBI	AGCT	1 cut(s)	566
AluI	AGCT	1 cut(s)	566
Alw21I	GWGCWC	2 cut(s)	349, 523
Alw26I	GTCTC	1 cut(s)	168
Alw44I	GTGCAC	1 cut(s)	345
AlwI	GGATC	1 cut(s)	490
AlwNI	CAGNNNCTG	1 cut(s)	434
AoxI	GGCC	3 cut(s)	214, 280, 682
ApaLI	GTGCAC	1 cut(s)	345
ApeKI	GCWGC	1 cut(s)	449
ApoI	RAATTY	3 cut(s)	29, 76, 421
AspA2I	CCTAGG	1 cut(s)	679
AspLEI	GCGC	1 cut(s)	199
AsuHPI	GGTGA	2 cut(s)	584, 602
AsuII	TTCGAA	1 cut(s)	254
AvrII	CCTAGG	1 cut(s)	679
BaeGI	GKGCMC	1 cut(s)	349
BanII	GRGCYC	1 cut(s)	653
BauI	CACGAG	1 cut(s)	348
BbsI	GAAGAC	1 cut(s)	30
Bbv12I	GWGCWC	2 cut(s)	349, 523
BbvI	GCAGC	1 cut(s)	436
BccI	CCATC	3 cut(s)	261, 269, 290
BcoDI	GTCTC	1 cut(s)	168
BfaI	CTAG	5 cut(s)	42, 339, 525, 569, 680
BfmI	CTRYAG	1 cut(s)	20
BisI	GCNGC	1 cut(s)	450
BlnI	CCTAGG	1 cut(s)	679
BlsI	GCNGC	1 cut(s)	451
BmsI	GCATC	2 cut(s)	461, 484
BpiI	GAAGAC	1 cut(s)	30
BpmI	CTGGAG	2 cut(s)	348, 411
Bpu14I	TTCGAA	1 cut(s)	254
BsaI	GGTCTC	1 cut(s)	168
BsaJI	CCNNGG	1 cut(s)	679
Bse1I	ACTGG	1 cut(s)	428
BseDI	CCNNGG	1 cut(s)	679
BseGI	GGATG	2 cut(s)	272, 559
BseMII	CTCAG	1 cut(s)	426
BseNI	ACTGG	1 cut(s)	428
BseSI	GKGCMC	1 cut(s)	349
BseXI	GCAGC	1 cut(s)	436
BshFI	GGCC	3 cut(s)	216, 282, 684
BsiHKAI	GWGCWC	2 cut(s)	349, 523
BslFI	GGGAC	1 cut(s)	661
BsmAI	GTCTC	1 cut(s)	168
BsmFI	GGGAC	1 cut(s)	661
BsnI	GGCC	3 cut(s)	216, 282, 684
Bso31I	GGTCTC	1 cut(s)	168
Bsp119I	TTCGAA	1 cut(s)	254
Bsp1286I	GDGCHC	3 cut(s)	349, 523, 653
Bsp1407I	TGTACA	1 cut(s)	579
Bsp143I	GATC	4 cut(s)	169, 482, 656, 661
BspACI	CCGC	1 cut(s)	160
BspANI	GGCC	3 cut(s)	216, 282, 684
BspCNI	CTCAG	1 cut(s)	427
BspMAI	CTGCAG	1 cut(s)	24
BspPI	GGATC	1 cut(s)	490
BspT104I	TTCGAA	1 cut(s)	254
BspTNI	GGTCTC	1 cut(s)	168
BsrGI	TGTACA	1 cut(s)	579
BsrI	ACTGG	1 cut(s)	428
BssECI	CCNNGG	1 cut(s)	679
BssMI	GATC	4 cut(s)	169, 482, 656, 661
BssSI	CACGAG	1 cut(s)	348
BssT1I	CCWWGG	1 cut(s)	679
Bst2BI	CACGAG	1 cut(s)	348
BstAUI	TGTACA	1 cut(s)	579
BstBI	TTCGAA	1 cut(s)	254
BstC8I	GCNNGC	1 cut(s)	214
BstDEI	CTNAG	1 cut(s)	435
BstF5I	GGATG	2 cut(s)	272, 559
BstHHI	GCGC	1 cut(s)	199
BstKTI	GATC	4 cut(s)	172, 485, 659, 664
BstMAI	GTCTC	1 cut(s)	168
BstMBI	GATC	4 cut(s)	169, 482, 656, 661
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstNSI	RCATGY	1 cut(s)	449
BstSFI	CTRYAG	1 cut(s)	20
BstSLI	GKGCMC	1 cut(s)	349
BstV1I	GCAGC	1 cut(s)	436
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	482
BstYI	RGATCY	1 cut(s)	482
BsuRI	GGCC	3 cut(s)	216, 282, 684
BtsCI	GGATG	2 cut(s)	272, 559
Cac8I	GCNNGC	1 cut(s)	214
CaiI	CAGNNNCTG	1 cut(s)	434
CfoI	GCGC	1 cut(s)	199
Csp6I	GTAC	1 cut(s)	580
CviAII	CATG	2 cut(s)	446, 539
CviJI	RGCY	8 cut(s)	89, 216, 282, 360, 566, 626, 651, 684
CviKI_1	RGCY	8 cut(s)	89, 216, 282, 360, 566, 626, 651, 684
CviQI	GTAC	1 cut(s)	580
DdeI	CTNAG	1 cut(s)	435
DpnI	GATC	4 cut(s)	171, 484, 658, 663
DpnII	GATC	4 cut(s)	169, 482, 656, 661
DraI	TTTAAA	1 cut(s)	28
Eco130I	CCWWGG	1 cut(s)	679
Eco147I	AGGCCT	2 cut(s)	216, 282
Eco24I	GRGCYC	1 cut(s)	653
Eco31I	GGTCTC	1 cut(s)	168
EcoT14I	CCWWGG	1 cut(s)	679
EcoT22I	ATGCAT	1 cut(s)	499
EcoT38I	GRGCYC	1 cut(s)	653
ErhI	CCWWGG	1 cut(s)	679
FaeI	CATG	2 cut(s)	449, 542
FaiI	YATR	8 cut(s)	11, 143, 145, 447, 470, 540, 584, 586
FaqI	GGGAC	1 cut(s)	661
FatI	CATG	2 cut(s)	445, 538
FauNDI	CATATG	1 cut(s)	584
Fnu4HI	GCNGC	1 cut(s)	450
FokI	GGATG	2 cut(s)	279, 566
FriOI	GRGCYC	1 cut(s)	653
Fsp4HI	GCNGC	1 cut(s)	450
FspBI	CTAG	5 cut(s)	42, 339, 525, 569, 680
GlaI	GCGC	1 cut(s)	198
GluI	GCNGC	1 cut(s)	450
GsuI	CTGGAG	2 cut(s)	348, 411
HaeIII	GGCC	3 cut(s)	216, 282, 684
HhaI	GCGC	1 cut(s)	199
Hin1II	CATG	2 cut(s)	449, 542
Hin6I	GCGC	1 cut(s)	197
HinP1I	GCGC	1 cut(s)	197
HphI	GGTGA	2 cut(s)	584, 602
Hpy166II	GTNNAC	2 cut(s)	347, 580
Hpy188I	TCNGA	5 cut(s)	174, 436, 457, 493, 661
Hpy188III	TCNNGA	4 cut(s)	113, 167, 365, 546
Hpy8I	GTNNAC	2 cut(s)	347, 580
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	7 cut(s)	22, 180, 212, 347, 452, 472, 497
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	1 cut(s)	435
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	2 cut(s)	449, 542
HspAI	GCGC	1 cut(s)	197
Kzo9I	GATC	4 cut(s)	169, 482, 656, 661
LmnI	GCTCC	2 cut(s)	75, 526
Lsp1109I	GCAGC	1 cut(s)	436
LweI	GCATC	2 cut(s)	461, 484
MaeI	CTAG	5 cut(s)	42, 339, 525, 569, 680
MaeII	ACGT	1 cut(s)	109
MaeIII	GTNAC	2 cut(s)	81, 441
MalI	GATC	4 cut(s)	171, 484, 658, 663
MboI	GATC	4 cut(s)	169, 482, 656, 661
MboII	GAAGA	1 cut(s)	30
MflI	RGATCY	1 cut(s)	482
MhlI	GDGCHC	3 cut(s)	349, 523, 653
MluCI	AATT	7 cut(s)	29, 58, 76, 258, 379, 421, 640
MnlI	CCTC	7 cut(s)	187, 236, 244, 272, 293, 432, 586
Mph1103I	ATGCAT	1 cut(s)	499
MseI	TTAA	6 cut(s)	27, 33, 219, 378, 477, 615
MwoI	GCNNNNNNNGC	1 cut(s)	344
NdeI	CATATG	1 cut(s)	584
NdeII	GATC	4 cut(s)	169, 482, 656, 661
NlaIII	CATG	2 cut(s)	449, 542
NmuCI	GTSAC	1 cut(s)	441
NsiI	ATGCAT	1 cut(s)	499
NspI	RCATGY	1 cut(s)	449
NspV	TTCGAA	1 cut(s)	254
PceI	AGGCCT	2 cut(s)	216, 282
PcsI	WCGNNNNNNNCGW	1 cut(s)	106
PkrI	GCNGC	1 cut(s)	451
PstI	CTGCAG	1 cut(s)	24
PstNI	CAGNNNCTG	1 cut(s)	434
PsuI	RGATCY	1 cut(s)	482
RsaI	GTAC	1 cut(s)	581
RsaNI	GTAC	1 cut(s)	580
SaqAI	TTAA	6 cut(s)	27, 33, 219, 378, 477, 615
SatI	GCNGC	1 cut(s)	450
Sau3AI	GATC	4 cut(s)	169, 482, 656, 661
SduI	GDGCHC	3 cut(s)	349, 523, 653
SetI	ASST	9 cut(s)	112, 247, 291, 443, 462, 568, 574, 597, 621
SfaNI	GCATC	2 cut(s)	461, 484
SfcI	CTRYAG	1 cut(s)	20
SfuI	TTCGAA	1 cut(s)	254
Sse9I	AATT	7 cut(s)	29, 58, 76, 258, 379, 421, 640
SseBI	AGGCCT	2 cut(s)	216, 282
SsiI	CCGC	1 cut(s)	160
SspMI	CTAG	5 cut(s)	42, 339, 525, 569, 680
StuI	AGGCCT	2 cut(s)	216, 282
StyI	CCWWGG	1 cut(s)	679
TaiI	ACGT	1 cut(s)	112
TaqI	TCGA	2 cut(s)	254, 502
TasI	AATT	7 cut(s)	29, 58, 76, 258, 379, 421, 640
TatI	WGTACW	1 cut(s)	579
Tru1I	TTAA	6 cut(s)	27, 33, 219, 378, 477, 615
Tru9I	TTAA	6 cut(s)	27, 33, 219, 378, 477, 615
TseFI	GTSAC	1 cut(s)	441
TseI	GCWGC	1 cut(s)	449
Tsp45I	GTSAC	1 cut(s)	441
TspDTI	ATGAA	1 cut(s)	52
TspGWI	ACGGA	2 cut(s)	168, 279
VneI	GTGCAC	1 cut(s)	345
XapI	RAATTY	3 cut(s)	29, 76, 421
XceI	RCATGY	1 cut(s)	449
XmaJI	CCTAGG	1 cut(s)	679
XspI	CTAG	5 cut(s)	42, 339, 525, 569, 680
Zsp2I	ATGCAT	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.