pycom05g01410

Uncharacterised protein family (UPF0203)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Reverse (-)
1755060 .. 1755521
462 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 219 bp
ATGGCGGAATTGCCCTCAATTATTCTCTCTTTCACAAATCTCTGCTTCCGTTGCTCTCGACTTGCCTTCTATCACTCTCAAACGCCGGGTAGGCTATGGACCACCCCCTTTCTACCTTCTTCTTCTTCTTCTTCTTTCACTTCTCCCTGTGCAAATCTGAGAGGCGCCTACCACAATTGCACTAGGTTGTACTCGGCAAAGTTTGTGAAGGACCAATAA

Protein Analysis

73

Amino Acids

8.11

Weight (kDa)

9.43

Isoelectric Point (pI)

65.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 164
AciI CCGC 1 cut(s) 5
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 1 cut(s) 191
AspLEI GCGC 1 cut(s) 167
AspS9I GGNCC 2 cut(s) 99, 211
AsuC2I CCSGG 1 cut(s) 87
AvaII GGWCC 2 cut(s) 99, 211
BanI GGYRCC 1 cut(s) 164
BcnI CCSGG 1 cut(s) 87
BfaI CTAG 1 cut(s) 183
BfoI RGCGCY 1 cut(s) 168
BglI GCCNNNNNGGC 1 cut(s) 91
Bme1390I CCNGG 1 cut(s) 87
Bme18I GGWCC 2 cut(s) 99, 211
BmgT120I GGNCC 2 cut(s) 99, 211
BmiI GGNNCC 1 cut(s) 166
BmrFI CCNGG 1 cut(s) 87
BpuMI CCSGG 1 cut(s) 87
BsaHI GRCGYC 1 cut(s) 165
BseMII CTCAG 1 cut(s) 149
BshNI GGYRCC 1 cut(s) 164
BsiSI CCGG 1 cut(s) 86
BspACI CCGC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 166
BspT107I GGYRCC 1 cut(s) 164
BssNI GRCGYC 1 cut(s) 165
BstACI GRCGYC 1 cut(s) 165
BstDEI CTNAG 1 cut(s) 158
BstH2I RGCGCY 1 cut(s) 168
BstHHI GCGC 1 cut(s) 167
BstMWI GCNNNNNNNGC 2 cut(s) 51, 91
BstSCI CCNGG 1 cut(s) 85
CfoI GCGC 1 cut(s) 167
Cfr13I GGNCC 2 cut(s) 99, 211
Csp6I GTAC 1 cut(s) 190
CviJI RGCY 1 cut(s) 94
CviKI_1 RGCY 1 cut(s) 94
CviQI GTAC 1 cut(s) 190
DdeI CTNAG 1 cut(s) 158
DinI GGCGCC 1 cut(s) 166
EciI GGCGGA 1 cut(s) 20
Eco47I GGWCC 2 cut(s) 99, 211
EgeI GGCGCC 1 cut(s) 166
EheI GGCGCC 1 cut(s) 166
FaiI YATR 1 cut(s) 97
FspBI CTAG 1 cut(s) 183
GlaI GCGC 1 cut(s) 166
HaeII RGCGCY 1 cut(s) 168
HapII CCGG 1 cut(s) 86
HhaI GCGC 1 cut(s) 167
Hin1I GRCGYC 1 cut(s) 165
Hin6I GCGC 1 cut(s) 165
HinP1I GCGC 1 cut(s) 165
HpaII CCGG 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 159
Hpy188III TCNNGA 1 cut(s) 57
HpyAV CCTTC 3 cut(s) 76, 126, 202
HpyCH4V TGCA 2 cut(s) 152, 180
HpyF10VI GCNNNNNNNGC 2 cut(s) 51, 91
HpyF3I CTNAG 1 cut(s) 158
Hsp92I GRCGYC 1 cut(s) 165
HspAI GCGC 1 cut(s) 165
KasI GGCGCC 1 cut(s) 164
LpnPI CCDG 2 cut(s) 99, 160
MaeI CTAG 1 cut(s) 183
MboII GAAGA 5 cut(s) 111, 114, 117, 120, 123
MfeI CAATTG 1 cut(s) 175
MluCI AATT 3 cut(s) 8, 18, 175
Mly113I GGCGCC 1 cut(s) 165
MnlI CCTC 2 cut(s) 25, 155
MspI CCGG 1 cut(s) 86
MspR9I CCNGG 1 cut(s) 87
MunI CAATTG 1 cut(s) 175
MwoI GCNNNNNNNGC 2 cut(s) 51, 91
NarI GGCGCC 1 cut(s) 165
NciI CCSGG 1 cut(s) 87
NlaIV GGNNCC 1 cut(s) 166
NmeAIII GCCGAG 1 cut(s) 173
PluTI GGCGCC 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 166
PspPI GGNCC 2 cut(s) 99, 211
RsaI GTAC 1 cut(s) 191
RsaNI GTAC 1 cut(s) 190
Sau96I GGNCC 2 cut(s) 99, 211
ScrFI CCNGG 1 cut(s) 87
SetI ASST 2 cut(s) 118, 188
SfoI GGCGCC 1 cut(s) 166
SgeI CNNG 7 cut(s) 69, 74, 98, 99, 159, 195, 205
SinI GGWCC 2 cut(s) 99, 211
Sse9I AATT 3 cut(s) 8, 18, 175
SsiI CCGC 1 cut(s) 5
SspDI GGCGCC 1 cut(s) 164
SspMI CTAG 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 85
TaqI TCGA 1 cut(s) 58
TasI AATT 3 cut(s) 8, 18, 175
TatI WGTACW 1 cut(s) 189
TspGWI ACGGA 1 cut(s) 38
VpaK11BI GGWCC 2 cut(s) 99, 211
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.