pycom05g01480

Zinc finger HIT domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Reverse (-)
1812995 .. 1813297
303 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 303 bp
ATGACAATATCATTCGGCAAGGAAGGAACGAAACTTATCCAACCTCTTGGCAAAGAGGAGGAATCAATATCACCAGAAGATGATGTAGAAAAGCAAGCCCACTCAAGCCTGACTCCTAGTCTTGACTGCCTCAAGTCAGAAATACCATCACCGTCTATTCATCTGGTTGACGTTGTATATAGCCACTGTTTTACAATCCCTCTTCATAATGGAGATTGCAATCAGATGCAATATCGAATAGCCATGACGGTGTTTTCTATGTTCCCTGCATTGTGGGTTTGCAATTCGGACTTGGTCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

101

Amino Acids

11.14

Weight (kDa)

4.78

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AhdI GACNNNNNGTC 1 cut(s) 117
AsuHPI GGTGA 2 cut(s) 63, 141
BccI CCATC 1 cut(s) 154
BfaI CTAG 1 cut(s) 117
BmeRI GACNNNNNGTC 1 cut(s) 117
BmsI GCATC 1 cut(s) 216
BpuEI CTTGAG 2 cut(s) 88, 116
BsaBI GATNNNNATC 1 cut(s) 219
Bse8I GATNNNNATC 1 cut(s) 219
BseJI GATNNNNATC 1 cut(s) 219
BseRI GAGGAG 1 cut(s) 71
Bst4CI ACNGT 3 cut(s) 153, 188, 250
Bst6I CTCTTC 1 cut(s) 207
BstC8I GCNNGC 1 cut(s) 96
BstXI CCANNNNNNTGG 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 184
Cac8I GCNNGC 1 cut(s) 96
CviAII CATG 1 cut(s) 244
CviJI RGCY 4 cut(s) 98, 108, 183, 242
CviKI_1 RGCY 4 cut(s) 98, 108, 183, 242
DriI GACNNNNNGTC 1 cut(s) 117
Eam1104I CTCTTC 1 cut(s) 207
Eam1105I GACNNNNNGTC 1 cut(s) 117
EarI CTCTTC 1 cut(s) 207
FaeI CATG 1 cut(s) 247
FaiI YATR 7 cut(s) 178, 180, 207, 245, 260, 299, 301
FatI CATG 1 cut(s) 243
FspBI CTAG 1 cut(s) 117
Hin1II CATG 1 cut(s) 247
HincII GTYRAC 1 cut(s) 169
HindII GTYRAC 1 cut(s) 169
HinfI GANTC 2 cut(s) 62, 112
HphI GGTGA 2 cut(s) 63, 141
Hpy166II GTNNAC 1 cut(s) 169
Hpy188I TCNGA 3 cut(s) 139, 225, 289
Hpy188III TCNNGA 1 cut(s) 122
Hpy8I GTNNAC 1 cut(s) 169
HpyAV CCTTC 1 cut(s) 17
HpyCH4III ACNGT 3 cut(s) 153, 188, 250
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 4 cut(s) 219, 229, 269, 282
HpySE526I ACGT 1 cut(s) 171
Hsp92II CATG 1 cut(s) 247
LpnPI CCDG 4 cut(s) 87, 122, 149, 279
LweI GCATC 1 cut(s) 216
MaeI CTAG 1 cut(s) 117
MaeII ACGT 1 cut(s) 171
MboII GAAGA 2 cut(s) 89, 194
MluCI AATT 1 cut(s) 283
MlyI GAGTC 1 cut(s) 106
MmeI TCCRAC 1 cut(s) 64
MnlI CCTC 5 cut(s) 49, 52, 54, 140, 210
MslI CAYNNNNRTG 1 cut(s) 248
NlaIII CATG 1 cut(s) 247
PfeI GAWTC 1 cut(s) 62
PflFI GACNNNGTC 1 cut(s) 293
PleI GAGTC 1 cut(s) 106
PpsI GAGTC 1 cut(s) 106
PsyI GACNNNGTC 1 cut(s) 293
RseI CAYNNNNRTG 1 cut(s) 248
SchI GAGTC 1 cut(s) 106
SetI ASST 2 cut(s) 46, 174
SfaNI GCATC 1 cut(s) 216
SmiMI CAYNNNNRTG 1 cut(s) 248
SmlI CTYRAG 2 cut(s) 103, 131
SmoI CTYRAG 2 cut(s) 103, 131
Sse9I AATT 1 cut(s) 283
SspMI CTAG 1 cut(s) 117
TaaI ACNGT 3 cut(s) 153, 188, 250
TaiI ACGT 1 cut(s) 174
TaqI TCGA 1 cut(s) 235
TasI AATT 1 cut(s) 283
TfiI GAWTC 1 cut(s) 62
TscAI CASTG 1 cut(s) 191
TspDTI ATGAA 2 cut(s) 149, 194
TspRI CASTG 1 cut(s) 191
Tth111I GACNNNGTC 1 cut(s) 293
XspI CTAG 1 cut(s) 117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.