Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2282927 .. 2284507

Gene Structure 1581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

ATGGCGGTTTCCGTGACGGCGTCCACGATTCTTTCTCTCAGCTCTGACCGTACGACTCGCTTAGCTGCGGCGGCGGCCTCATCCTCCTCCTCTTCTTGTTCAAAACTGTCTTCCTCTACTTCTCTGCGATTTCCGGCGCAGCTTCGACGTGTTCGGATCGGAACTCAGGACTCACGGCCTCGGCTTCTTCCTCCGAACAAGGAAGAAAGAAAAATAGCAAGAAGCCATTCGGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004791 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006979 GO:0008047 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009636 GO:0009987 GO:0015035 GO:0015036 GO:0016209 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0016671 GO:0019725 GO:0030234 GO:0033554 GO:0034599 GO:0042221 GO:0042592 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045454 GO:0047134 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051716 GO:0055114 GO:0065007 GO:0065008 GO:0065009 GO:0070887 GO:0097237 GO:0098754 GO:0098772 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Thioredoxin

Protein Analysis

79

Amino Acids

8.3

Weight (kDa)

11.83

Isoelectric Point (pI)

75.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	5, 68, 71, 74
AclWI	GGATC	1 cut(s)	164
AcyI	GRCGYC	1 cut(s)	20
AfaI	GTAC	1 cut(s)	52
AflIII	ACRYGT	1 cut(s)	148
AgsI	TTSAA	1 cut(s)	102
AjiI	CACGTC	1 cut(s)	149
AluBI	AGCT	3 cut(s)	42, 65, 142
AluI	AGCT	3 cut(s)	42, 65, 142
AlwI	GGATC	1 cut(s)	164
AoxI	GGCC	2 cut(s)	75, 176
ApeKI	GCWGC	2 cut(s)	65, 139
Asp700I	GAANNNNTTC	1 cut(s)	226
AspLEI	GCGC	1 cut(s)	139
BbsI	GAAGAC	1 cut(s)	102
BbvI	GCAGC	2 cut(s)	52, 151
BceAI	ACGGC	2 cut(s)	33, 191
BisI	GCNGC	5 cut(s)	66, 69, 72, 75, 140
BlpI	GCTNAGC	1 cut(s)	61
BlsI	GCNGC	5 cut(s)	67, 70, 73, 76, 141
BmgBI	CACGTC	1 cut(s)	149
BpiI	GAAGAC	1 cut(s)	102
Bpu1102I	GCTNAGC	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	179
BseDI	CCNNGG	1 cut(s)	179
BseGI	GGATG	1 cut(s)	80
BseMII	CTCAG	2 cut(s)	52, 179
BseRI	GAGGAG	2 cut(s)	76, 79
BseXI	GCAGC	2 cut(s)	52, 151
BshFI	GGCC	2 cut(s)	77, 178
BsiSI	CCGG	1 cut(s)	134
BsiWI	CGTACG	1 cut(s)	50
BsnI	GGCC	2 cut(s)	77, 178
Bsp143I	GATC	1 cut(s)	156
Bsp1720I	GCTNAGC	1 cut(s)	61
BspACI	CCGC	4 cut(s)	5, 68, 71, 74
BspANI	GGCC	2 cut(s)	77, 178
BspCNI	CTCAG	2 cut(s)	51, 178
BspPI	GGATC	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	179
BssMI	GATC	1 cut(s)	156
BssNI	GRCGYC	1 cut(s)	20
Bst4CI	ACNGT	2 cut(s)	50, 108
Bst6I	CTCTTC	1 cut(s)	97
BstACI	GRCGYC	1 cut(s)	20
BstDEI	CTNAG	3 cut(s)	38, 61, 165
BstF5I	GGATG	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	139
BstKTI	GATC	1 cut(s)	159
BstMBI	GATC	1 cut(s)	156
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 74
BstV1I	GCAGC	2 cut(s)	52, 151
BstV2I	GAAGAC	1 cut(s)	102
BsuRI	GGCC	2 cut(s)	77, 178
BtrI	CACGTC	1 cut(s)	149
BtsCI	GGATG	1 cut(s)	80
CfoI	GCGC	1 cut(s)	139
CseI	GACGC	1 cut(s)	9
Csp6I	GTAC	1 cut(s)	51
CviJI	RGCY	7 cut(s)	42, 65, 77, 142, 178, 184, 225
CviKI_1	RGCY	7 cut(s)	42, 65, 77, 142, 178, 184, 225
CviQI	GTAC	1 cut(s)	51
DdeI	CTNAG	3 cut(s)	38, 61, 165
DpnI	GATC	1 cut(s)	158
DpnII	GATC	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	97
EarI	CTCTTC	1 cut(s)	97
FaiI	YATR	1 cut(s)	235
Fnu4HI	GCNGC	5 cut(s)	66, 69, 72, 75, 140
FokI	GGATG	1 cut(s)	67
Fsp4HI	GCNGC	5 cut(s)	66, 69, 72, 75, 140
GlaI	GCGC	1 cut(s)	138
GluI	GCNGC	5 cut(s)	66, 69, 72, 75, 140
HaeIII	GGCC	2 cut(s)	77, 178
HapII	CCGG	1 cut(s)	134
HgaI	GACGC	1 cut(s)	9
HhaI	GCGC	1 cut(s)	139
Hin1I	GRCGYC	1 cut(s)	20
Hin6I	GCGC	1 cut(s)	137
HinP1I	GCGC	1 cut(s)	137
HinfI	GANTC	3 cut(s)	28, 55, 170
HpaII	CCGG	1 cut(s)	134
Hpy166II	GTNNAC	1 cut(s)	24
Hpy188I	TCNGA	4 cut(s)	46, 156, 161, 195
Hpy188III	TCNNGA	1 cut(s)	167
Hpy8I	GTNNAC	1 cut(s)	24
Hpy99I	CGWCG	1 cut(s)	150
HpyCH4III	ACNGT	2 cut(s)	50, 108
HpyCH4IV	ACGT	1 cut(s)	148
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 74
HpyF3I	CTNAG	3 cut(s)	38, 61, 165
HpySE526I	ACGT	1 cut(s)	148
Hsp92I	GRCGYC	1 cut(s)	20
HspAI	GCGC	1 cut(s)	137
Kzo9I	GATC	1 cut(s)	156
LpnPI	CCDG	2 cut(s)	147, 152
Lsp1109I	GCAGC	2 cut(s)	52, 151
MaeII	ACGT	1 cut(s)	148
MaeIII	GTNAC	1 cut(s)	13
MalI	GATC	1 cut(s)	158
MboI	GATC	1 cut(s)	156
MboII	GAAGA	4 cut(s)	84, 102, 179, 215
MlyI	GAGTC	2 cut(s)	49, 164
MnlI	CCTC	7 cut(s)	88, 94, 97, 100, 124, 189, 201
MroXI	GAANNNNTTC	1 cut(s)	226
MspI	CCGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	2 cut(s)	71, 74
NdeII	GATC	1 cut(s)	156
NmeAIII	GCCGAG	1 cut(s)	160
NmuCI	GTSAC	1 cut(s)	13
PcsI	WCGNNNNNNNCGW	1 cut(s)	23
PdmI	GAANNNNTTC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	28
Pfl23II	CGTACG	1 cut(s)	50
PflFI	GACNNNGTC	1 cut(s)	19
PkrI	GCNGC	5 cut(s)	67, 70, 73, 76, 141
PleI	GAGTC	2 cut(s)	49, 164
PpsI	GAGTC	2 cut(s)	49, 164
PspLI	CGTACG	1 cut(s)	50
PsyI	GACNNNGTC	1 cut(s)	19
RsaI	GTAC	1 cut(s)	52
RsaNI	GTAC	1 cut(s)	51
SatI	GCNGC	5 cut(s)	66, 69, 72, 75, 140
Sau3AI	GATC	1 cut(s)	156
SchI	GAGTC	2 cut(s)	49, 164
SetI	ASST	4 cut(s)	44, 67, 144, 151
SsiI	CCGC	4 cut(s)	5, 68, 71, 74
TaaI	ACNGT	2 cut(s)	50, 108
TaiI	ACGT	1 cut(s)	151
TaqI	TCGA	1 cut(s)	145
TauI	GCSGC	3 cut(s)	71, 74, 77
TfiI	GAWTC	1 cut(s)	28
TseFI	GTSAC	1 cut(s)	13
TseI	GCWGC	2 cut(s)	65, 139
Tsp45I	GTSAC	1 cut(s)	13
Tth111I	GACNNNGTC	1 cut(s)	19
XmnI	GAANNNNTTC	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.