Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

3769351 .. 3769962

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGAAGTTGAAACCGCCGACAAGAATTCTCAGGCCGAGCTGGAGCAGCAGGTGAGCCCGCTGAAAAAAATCATCCTGGTCGCCTCCATTGCCGCCGGCGTCCAATTCGGGTGGGCACTGCAACTCTCCCTCCTCACCCCCTACGTCCAGCTCCTCGGCGTCCCCCACACCTGGGCCGCCTTCATCTGGCTCTGCGGCCCCATCTCCGGCTTGCTCGTTCAGCCCATCGTAGGCTACCACAGCGACCGTTGCACCTCCCGCTTTGGACGCCGTAGCCCTTTCATCGCTTCCGGCTCCGCCCTCGTCGCCGTCGCCGTCTTTCTCATCGGTTACGCTGCTGATCGATCGGACACCTCACCGGCGATTCCCTTGAGAAAACCACCAAGCCCCGTGCTGTCTCTATCTTCGTGGTCGGTTTCTGGATCCTCGACGTCGCCAACAACATGCTGCAGGGGCCATGCAGGGCCCTCCTCGCCGACATCTCTGGATCCGACCCGAAGAAAATGCGGACCGCCAACGCCCTCTTCGCTTTCTTCATGGCTGTCGGAAACGTACTTGGTTACGCCGCTGGGGCCTACAACAACCTCCACAGAATGTTCCCCTTCACCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008506 GO:0008515 GO:0008643 GO:0009669 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015154 GO:0015157 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_2

Protein Analysis

204

Amino Acids

21.38

Weight (kDa)

8.59

Isoelectric Point (pI)

59.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_2	PF13347	31 - 109	1.9e-06	MFS/sugar transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	40
AatII	GACGTC	1 cut(s)	434
Acc36I	ACCTGC	1 cut(s)	40
AclWI	GGATC	4 cut(s)	417, 430, 482, 495
AcsI	RAATTY	1 cut(s)	25
AcyI	GRCGYC	4 cut(s)	99, 159, 268, 431
AfaI	GTAC	1 cut(s)	554
AfiI	CCNNNNNNNGG	5 cut(s)	171, 172, 186, 206, 230
AgsI	TTSAA	1 cut(s)	11
AjnI	CCWGG	2 cut(s)	75, 170
AjuI	GAANNNNNNNTTGG	2 cut(s)	508, 540
AluBI	AGCT	2 cut(s)	40, 151
AluI	AGCT	2 cut(s)	40, 151
Alw26I	GTCTC	1 cut(s)	402
AlwI	GGATC	4 cut(s)	417, 430, 482, 495
AoxI	GGCC	6 cut(s)	33, 174, 196, 454, 464, 572
ApaI	GGGCCC	1 cut(s)	468
ApeKI	GCWGC	3 cut(s)	46, 335, 447
ApoI	RAATTY	1 cut(s)	25
AspS9I	GGNCC	7 cut(s)	174, 197, 454, 464, 465, 509, 572
AsuHPI	GGTGA	4 cut(s)	64, 127, 348, 597
AvaII	GGWCC	1 cut(s)	509
BaeGI	GKGCMC	2 cut(s)	118, 468
BamHI	GGATCC	2 cut(s)	422, 487
BanII	GRGCYC	2 cut(s)	59, 468
BbvI	GCAGC	3 cut(s)	58, 322, 434
BccI	CCATC	2 cut(s)	209, 233
BceAI	ACGGC	3 cut(s)	255, 293, 299
BcgI	CGANNNNNNTGC	2 cut(s)	486, 520
BciT130I	CCWGG	2 cut(s)	77, 172
BcoDI	GTCTC	1 cut(s)	402
BfmI	CTRYAG	1 cut(s)	448
BfuAI	ACCTGC	1 cut(s)	40
BglI	GCCNNNNNGGC	1 cut(s)	571
BisI	GCNGC	7 cut(s)	47, 93, 177, 196, 336, 448, 566
BlsI	GCNGC	7 cut(s)	48, 94, 178, 197, 337, 449, 567
Bme1390I	CCNGG	2 cut(s)	77, 172
Bme18I	GGWCC	1 cut(s)	509
BmgT120I	GGNCC	7 cut(s)	174, 197, 454, 464, 465, 509, 572
BmiI	GGNNCC	7 cut(s)	199, 295, 424, 455, 466, 489, 573
BmrFI	CCNGG	2 cut(s)	77, 172
BpmI	CTGGAG	1 cut(s)	62
BpuEI	CTTGAG	1 cut(s)	391
Bsa29I	ATCGAT	1 cut(s)	343
BsaHI	GRCGYC	4 cut(s)	99, 159, 268, 431
BsaJI	CCNNGG	2 cut(s)	154, 171
BsaXI	ACNNNNNCTCC	2 cut(s)	114, 144
Bsc4I	CCNNNNNNNGG	5 cut(s)	171, 172, 186, 206, 230
Bse118I	RCCGGY	2 cut(s)	95, 358
Bse3DI	GCAATG	1 cut(s)	87
BseBI	CCWGG	2 cut(s)	77, 172
BseCI	ATCGAT	1 cut(s)	343
BseDI	CCNNGG	2 cut(s)	154, 171
BseGI	GGATG	1 cut(s)	72
BseLI	CCNNNNNNNGG	5 cut(s)	171, 172, 186, 206, 230
BseMI	GCAATG	1 cut(s)	87
BseMII	CTCAG	1 cut(s)	44
BseRI	GAGGAG	3 cut(s)	122, 143, 460
BseSI	GKGCMC	2 cut(s)	118, 468
BseXI	GCAGC	3 cut(s)	58, 322, 434
BseYI	CCCAGC	1 cut(s)	568
Bsh1285I	CGRYCG	2 cut(s)	247, 347
BshFI	GGCC	6 cut(s)	35, 176, 198, 456, 466, 574
BshVI	ATCGAT	1 cut(s)	343
BsiEI	CGRYCG	2 cut(s)	247, 347
BsiSI	CCGG	4 cut(s)	96, 207, 291, 359
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	5 cut(s)	171, 172, 186, 206, 230
BsmAI	GTCTC	1 cut(s)	402
BsmFI	GGGAC	1 cut(s)	146
BsnI	GGCC	6 cut(s)	35, 176, 198, 456, 466, 574
Bsp120I	GGGCCC	1 cut(s)	464
Bsp1286I	GDGCHC	3 cut(s)	59, 118, 468
Bsp143I	GATC	4 cut(s)	340, 344, 422, 487
BspANI	GGCC	6 cut(s)	35, 176, 198, 456, 466, 574
BspCNI	CTCAG	1 cut(s)	43
BspDI	ATCGAT	1 cut(s)	343
BspLI	GGNNCC	7 cut(s)	199, 295, 424, 455, 466, 489, 573
BspMAI	CTGCAG	1 cut(s)	452
BspMI	ACCTGC	1 cut(s)	40
BspPI	GGATC	4 cut(s)	417, 430, 482, 495
BsrDI	GCAATG	1 cut(s)	87
BsrFI	RCCGGY	2 cut(s)	95, 358
BssAI	RCCGGY	2 cut(s)	95, 358
BssECI	CCNNGG	2 cut(s)	154, 171
BssMI	GATC	4 cut(s)	340, 344, 422, 487
BssNI	GRCGYC	4 cut(s)	99, 159, 268, 431
Bst2UI	CCWGG	2 cut(s)	77, 172
Bst4CI	ACNGT	1 cut(s)	248
Bst6I	CTCTTC	1 cut(s)	529
BstACI	GRCGYC	4 cut(s)	99, 159, 268, 431
BstC8I	GCNNGC	3 cut(s)	59, 97, 212
BstDEI	CTNAG	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	72
BstKTI	GATC	4 cut(s)	343, 347, 425, 490
BstMAI	GTCTC	1 cut(s)	402
BstMBI	GATC	4 cut(s)	340, 344, 422, 487
BstMCI	CGRYCG	2 cut(s)	247, 347
BstNI	CCWGG	2 cut(s)	77, 172
BstNSI	RCATGY	1 cut(s)	447
BstSCI	CCNGG	2 cut(s)	75, 170
BstSFI	CTRYAG	1 cut(s)	448
BstSLI	GKGCMC	2 cut(s)	118, 468
BstV1I	GCAGC	3 cut(s)	58, 322, 434
BstX2I	RGATCY	2 cut(s)	422, 487
BstYI	RGATCY	2 cut(s)	422, 487
Bsu15I	ATCGAT	1 cut(s)	343
BsuRI	GGCC	6 cut(s)	35, 176, 198, 456, 466, 574
BsuTUI	ATCGAT	1 cut(s)	343
BtgZI	GCGATG	1 cut(s)	268
BtsCI	GGATG	1 cut(s)	72
BtsI	GCAGTG	1 cut(s)	116
BtsIMutI	CAGTG	1 cut(s)	116
BveI	ACCTGC	1 cut(s)	40
Cac8I	GCNNGC	3 cut(s)	59, 97, 212
Cfr10I	RCCGGY	2 cut(s)	95, 358
Cfr13I	GGNCC	7 cut(s)	174, 197, 454, 464, 465, 509, 572
ClaI	ATCGAT	1 cut(s)	343
CpoI	CGGWCCG	1 cut(s)	509
CseI	GACGC	3 cut(s)	88, 148, 276
Csp6I	GTAC	1 cut(s)	553
CspCI	CAANNNNNGTGG	2 cut(s)	92, 127
CspI	CGGWCCG	1 cut(s)	509
CviAII	CATG	4 cut(s)	444, 458, 537, 609
CviQI	GTAC	1 cut(s)	553
DdeI	CTNAG	1 cut(s)	30
DpnI	GATC	4 cut(s)	342, 346, 424, 489
DpnII	GATC	4 cut(s)	340, 344, 422, 487
Eam1104I	CTCTTC	1 cut(s)	529
EarI	CTCTTC	1 cut(s)	529
EciI	GGCGGA	1 cut(s)	286
Eco24I	GRGCYC	2 cut(s)	59, 468
Eco47I	GGWCC	1 cut(s)	509
EcoO109I	RGGNCCY	3 cut(s)	464, 465, 572
EcoRI	GAATTC	1 cut(s)	25
EcoRII	CCWGG	2 cut(s)	75, 170
EcoT38I	GRGCYC	2 cut(s)	59, 468
FaeI	CATG	4 cut(s)	447, 461, 540, 612
FaiI	YATR	4 cut(s)	445, 459, 538, 610
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	4 cut(s)	443, 457, 536, 608
FauI	CCCGC	2 cut(s)	66, 266
Fnu4HI	GCNGC	7 cut(s)	47, 93, 177, 196, 336, 448, 566
FokI	GGATG	1 cut(s)	59
FriOI	GRGCYC	2 cut(s)	59, 468
Fsp4HI	GCNGC	7 cut(s)	47, 93, 177, 196, 336, 448, 566
GluI	GCNGC	7 cut(s)	47, 93, 177, 196, 336, 448, 566
GsaI	CCCAGC	1 cut(s)	572
GsuI	CTGGAG	1 cut(s)	62
HaeIII	GGCC	6 cut(s)	35, 176, 198, 456, 466, 574
HapII	CCGG	4 cut(s)	96, 207, 291, 359
HgaI	GACGC	3 cut(s)	88, 148, 276
Hin1I	GRCGYC	4 cut(s)	99, 159, 268, 431
Hin1II	CATG	4 cut(s)	447, 461, 540, 612
HinfI	GANTC	1 cut(s)	364
HpaII	CCGG	4 cut(s)	96, 207, 291, 359
HphI	GGTGA	4 cut(s)	64, 127, 348, 597
Hpy188I	TCNGA	3 cut(s)	349, 492, 547
Hpy188III	TCNNGA	2 cut(s)	420, 485
Hpy99I	CGWCG	4 cut(s)	308, 314, 433, 436
HpyAV	CCTTC	2 cut(s)	190, 612
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4IV	ACGT	3 cut(s)	144, 431, 551
HpyCH4V	TGCA	4 cut(s)	121, 252, 450, 461
HpyF3I	CTNAG	1 cut(s)	30
HpySE526I	ACGT	3 cut(s)	144, 431, 551
Hsp92I	GRCGYC	4 cut(s)	99, 159, 268, 431
Hsp92II	CATG	4 cut(s)	447, 461, 540, 612
KroI	GCCGGC	1 cut(s)	95
KroNI	GCCGGC	1 cut(s)	97
Kzo9I	GATC	4 cut(s)	340, 344, 422, 487
LmnI	GCTCC	3 cut(s)	43, 156, 299
Lsp1109I	GCAGC	3 cut(s)	58, 322, 434
MaeII	ACGT	3 cut(s)	144, 431, 551
MaeIII	GTNAC	2 cut(s)	329, 559
MalI	GATC	4 cut(s)	342, 346, 424, 489
MboI	GATC	4 cut(s)	340, 344, 422, 487
MboII	GAAGA	4 cut(s)	396, 510, 516, 525
MflI	RGATCY	2 cut(s)	422, 487
MhlI	GDGCHC	3 cut(s)	59, 118, 468
MluCI	AATT	2 cut(s)	25, 104
MmeI	TCCRAC	2 cut(s)	515, 525
MreI	CGCCGGCG	1 cut(s)	95
MroNI	GCCGGC	1 cut(s)	95
MspA1I	CMGCKG	2 cut(s)	61, 568
MspI	CCGG	4 cut(s)	96, 207, 291, 359
MspR9I	CCNGG	2 cut(s)	77, 172
MvaI	CCWGG	2 cut(s)	77, 172
NaeI	GCCGGC	1 cut(s)	97
NdeII	GATC	4 cut(s)	340, 344, 422, 487
NgoMIV	GCCGGC	1 cut(s)	95
NlaIII	CATG	4 cut(s)	447, 461, 540, 612
NlaIV	GGNNCC	7 cut(s)	199, 295, 424, 455, 466, 489, 573
NmeAIII	GCCGAG	2 cut(s)	61, 135
NspI	RCATGY	1 cut(s)	447
PaqCI	CACCTGC	1 cut(s)	40
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PdiI	GCCGGC	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	364
PkrI	GCNGC	7 cut(s)	48, 94, 178, 197, 337, 449, 567
Ple19I	CGATCG	1 cut(s)	347
Psp6I	CCWGG	2 cut(s)	75, 170
PspFI	CCCAGC	1 cut(s)	568
PspGI	CCWGG	2 cut(s)	75, 170
PspN4I	GGNNCC	7 cut(s)	199, 295, 424, 455, 466, 489, 573
PspOMI	GGGCCC	1 cut(s)	464
PspPI	GGNCC	7 cut(s)	174, 197, 454, 464, 465, 509, 572
PstI	CTGCAG	1 cut(s)	452
PsuI	RGATCY	2 cut(s)	422, 487
PvuI	CGATCG	1 cut(s)	347
RsaI	GTAC	1 cut(s)	554
RsaNI	GTAC	1 cut(s)	553
Rsr2I	CGGWCCG	1 cut(s)	509
RsrII	CGGWCCG	1 cut(s)	509
SatI	GCNGC	7 cut(s)	47, 93, 177, 196, 336, 448, 566
Sau3AI	GATC	4 cut(s)	340, 344, 422, 487
Sau96I	GGNCC	7 cut(s)	174, 197, 454, 464, 465, 509, 572
ScrFI	CCNGG	2 cut(s)	77, 172
SduI	GDGCHC	3 cut(s)	59, 118, 468
SfcI	CTRYAG	1 cut(s)	448
SgrAI	CRCCGGYG	2 cut(s)	95, 358
SinI	GGWCC	1 cut(s)	509
SmlI	CTYRAG	1 cut(s)	370
SmoI	CTYRAG	1 cut(s)	370
Sse9I	AATT	2 cut(s)	25, 104
StyD4I	CCNGG	2 cut(s)	75, 170
TaaI	ACNGT	1 cut(s)	248
TaiI	ACGT	3 cut(s)	147, 434, 554
TaqI	TCGA	2 cut(s)	343, 428
TasI	AATT	2 cut(s)	25, 104
TauI	GCSGC	4 cut(s)	95, 179, 198, 568
TfiI	GAWTC	1 cut(s)	364
TscAI	CASTG	1 cut(s)	123
TseI	GCWGC	3 cut(s)	46, 335, 447
TspDTI	ATGAA	3 cut(s)	172, 271, 525
TspRI	CASTG	1 cut(s)	123
VpaK11BI	GGWCC	1 cut(s)	509
XapI	RAATTY	1 cut(s)	25
XceI	RCATGY	1 cut(s)	447
ZraI	GACGTC	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.