pycom05g03770

ATP-dependent Clp protease proteolytic subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
4302508 .. 4303512
1005 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 345 bp
ATGGGAGCATTAGCTGGTTTCTCAGCCCCTCTGAGCTTTTCATTGGCTTCTCGCCGGAGTAGTAACTCATCATCTCTTCCTTTATTGCCTCTCAGTCGCAGAGACTCAACGCCCAAGTCCACAGTCTCTGCCTTGCACAGTCCGTATGGCGATTCTTTAGCAACTGGGTTATCTAGCAGAACTTGTGGGTCACCTCTAAAGCTTGACGGCAACGATTTTGGTGATACTAGTACAAGTTATGGTGCAATAGAAGCCAAAAAAGGGAATCCACCCATACTCCCAGCTGTGATGACCCCAGGTGGACCATTAGATCGATATCGTCTGTATTATTCAGGAACCGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04112 ko04212 map04112 map04212
Pfam Domains
Protein Families
CLP_protease

Protein Analysis

115

Amino Acids

11.8

Weight (kDa)

9.51

Isoelectric Point (pI)

51.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 232
AfiI CCNNNNNNNGG 1 cut(s) 261
AhlI ACTAGT 1 cut(s) 227
AjnI CCWGG 1 cut(s) 295
AluBI AGCT 4 cut(s) 14, 36, 202, 284
AluI AGCT 4 cut(s) 14, 36, 202, 284
Alw26I GTCTC 2 cut(s) 96, 130
AlwNI CAGNNNCTG 1 cut(s) 128
AspS9I GGNCC 1 cut(s) 302
AsuHPI GGTGA 2 cut(s) 183, 233
AvaII GGWCC 1 cut(s) 302
BceAI ACGGC 1 cut(s) 223
BciT130I CCWGG 1 cut(s) 297
BcoDI GTCTC 2 cut(s) 96, 130
BcuI ACTAGT 1 cut(s) 227
BfaI CTAG 2 cut(s) 174, 228
Bme1390I CCNGG 1 cut(s) 297
Bme18I GGWCC 1 cut(s) 302
BmgT120I GGNCC 1 cut(s) 302
BmiI GGNNCC 1 cut(s) 337
BmrFI CCNGG 1 cut(s) 297
BmrI ACTGGG 1 cut(s) 174
BmuI ACTGGG 1 cut(s) 174
Bsa29I ATCGAT 1 cut(s) 313
BsaBI GATNNNNATC 1 cut(s) 315
BsaJI CCNNGG 1 cut(s) 295
BsaXI ACNNNNNCTCC 2 cut(s) 261, 291
Bsc4I CCNNNNNNNGG 1 cut(s) 261
Bse1I ACTGG 1 cut(s) 169
Bse8I GATNNNNATC 1 cut(s) 315
BseBI CCWGG 1 cut(s) 297
BseCI ATCGAT 1 cut(s) 313
BseDI CCNNGG 1 cut(s) 295
BseJI GATNNNNATC 1 cut(s) 315
BseLI CCNNNNNNNGG 1 cut(s) 261
BseMII CTCAG 3 cut(s) 23, 36, 106
BseNI ACTGG 1 cut(s) 169
BseYI CCCAGC 1 cut(s) 280
BshVI ATCGAT 1 cut(s) 313
BsiSI CCGG 1 cut(s) 55
BslI CCNNNNNNNGG 1 cut(s) 261
BsmAI GTCTC 2 cut(s) 96, 130
Bsp143I GATC 1 cut(s) 310
BspCNI CTCAG 3 cut(s) 24, 35, 105
BspDI ATCGAT 1 cut(s) 313
BspLI GGNNCC 1 cut(s) 337
BsrI ACTGG 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 1 cut(s) 310
Bst2UI CCWGG 1 cut(s) 297
Bst4CI ACNGT 3 cut(s) 124, 140, 340
Bst6I CTCTTC 1 cut(s) 81
BstDEI CTNAG 3 cut(s) 22, 32, 92
BstEII GGTNACC 1 cut(s) 189
BstKTI GATC 1 cut(s) 313
BstMAI GTCTC 2 cut(s) 96, 130
BstMBI GATC 1 cut(s) 310
BstMWI GCNNNNNNNGC 1 cut(s) 251
BstNI CCWGG 1 cut(s) 297
BstPI GGTNACC 1 cut(s) 189
BstSCI CCNGG 1 cut(s) 295
Bsu15I ATCGAT 1 cut(s) 313
BsuTUI ATCGAT 1 cut(s) 313
CaiI CAGNNNCTG 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 302
ClaI ATCGAT 1 cut(s) 313
Csp6I GTAC 1 cut(s) 231
CviJI RGCY 7 cut(s) 14, 26, 36, 47, 202, 254, 284
CviKI_1 RGCY 7 cut(s) 14, 26, 36, 47, 202, 254, 284
CviQI GTAC 1 cut(s) 231
DdeI CTNAG 3 cut(s) 22, 32, 92
DpnI GATC 1 cut(s) 312
DpnII GATC 1 cut(s) 310
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco32I GATATC 1 cut(s) 317
Eco47I GGWCC 1 cut(s) 302
Eco91I GGTNACC 1 cut(s) 189
EcoO65I GGTNACC 1 cut(s) 189
EcoRII CCWGG 1 cut(s) 295
EcoRV GATATC 1 cut(s) 317
FaiI YATR 4 cut(s) 147, 240, 275, 343
FspBI CTAG 2 cut(s) 174, 228
GsaI CCCAGC 1 cut(s) 284
HapII CCGG 1 cut(s) 55
HindIII AAGCTT 1 cut(s) 200
HinfI GANTC 3 cut(s) 104, 152, 265
HpaII CCGG 1 cut(s) 55
HphI GGTGA 2 cut(s) 183, 233
Hpy166II GTNNAC 2 cut(s) 120, 302
Hpy188I TCNGA 1 cut(s) 33
Hpy188III TCNNGA 1 cut(s) 333
Hpy8I GTNNAC 2 cut(s) 120, 302
HpyCH4III ACNGT 3 cut(s) 124, 140, 340
HpyCH4V TGCA 2 cut(s) 136, 245
HpyF10VI GCNNNNNNNGC 1 cut(s) 251
HpyF3I CTNAG 3 cut(s) 22, 32, 92
Kzo9I GATC 1 cut(s) 310
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 6 cut(s) 68, 150, 282, 294, 309, 318
MaeI CTAG 2 cut(s) 174, 228
MaeIII GTNAC 2 cut(s) 62, 189
MalI GATC 1 cut(s) 312
MboI GATC 1 cut(s) 310
MboII GAAGA 1 cut(s) 68
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 3 cut(s) 39, 99, 204
MspA1I CMGCKG 1 cut(s) 284
MspI CCGG 1 cut(s) 55
MspR9I CCNGG 1 cut(s) 297
MvaI CCWGG 1 cut(s) 297
MwoI GCNNNNNNNGC 1 cut(s) 251
NdeII GATC 1 cut(s) 310
NlaIV GGNNCC 1 cut(s) 337
NmuCI GTSAC 1 cut(s) 189
PfeI GAWTC 2 cut(s) 152, 265
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
Psp6I CCWGG 1 cut(s) 295
PspEI GGTNACC 1 cut(s) 189
PspFI CCCAGC 1 cut(s) 280
PspGI CCWGG 1 cut(s) 295
PspN4I GGNNCC 1 cut(s) 337
PspPI GGNCC 1 cut(s) 302
PstNI CAGNNNCTG 1 cut(s) 128
PvuII CAGCTG 1 cut(s) 284
RsaI GTAC 1 cut(s) 232
RsaNI GTAC 1 cut(s) 231
Sau3AI GATC 1 cut(s) 310
Sau96I GGNCC 1 cut(s) 302
SchI GAGTC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 297
SetI ASST 6 cut(s) 16, 38, 196, 204, 286, 301
SinI GGWCC 1 cut(s) 302
SpeI ACTAGT 1 cut(s) 227
SspMI CTAG 2 cut(s) 174, 228
StyD4I CCNGG 1 cut(s) 295
TaaI ACNGT 3 cut(s) 124, 140, 340
TaqI TCGA 1 cut(s) 313
TatI WGTACW 1 cut(s) 230
TfiI GAWTC 2 cut(s) 152, 265
TseFI GTSAC 1 cut(s) 189
Tsp45I GTSAC 1 cut(s) 189
TspDTI ATGAA 1 cut(s) 30
TspGWI ACGGA 1 cut(s) 132
VpaK11BI GGWCC 1 cut(s) 302
XspI CTAG 2 cut(s) 174, 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.