Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4423200 .. 4424618

Gene Structure 1419 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGTGGGATTCTGAGACTGAGTCGGTTGGAGGGAGAGATTACAAGAATGGAGTTCTCTGTTCATCCAAGCACAATGTTAAGACTGATGGCTTTGAGCTCAAAGGCAACTCTTGGTATGTAGCAAGTGATATCCCAAGCGACCTGCTAGTTCAAGTTGGGGATGTAAATTTTCACTTGCACAAGTATCCCCTGCTTTCAAGGAGTGGAAAGATCAACAGAGTCATATATGAATTACGCAACCCGGACCTGAGTAAGATGTGTTTGGATGATCTTCCTGGTGGACCACAGGCCTTCGAGCTAGCTGCGAAATTCTGCTATGGAATTGCTGTCGATCTAACAGCAGCAAATATTTCAGGCTTGAGATGTGCTGCAGAGTACCTTGAAATGACAGAGGACTTGGAAGAAGGCAACCTTATCTTCAAAACTGAGGCTTTTCTTAGCTATGTGGTTTTATCCTCATGGAGAGACTCCATTGTGGTGTTGAAAAGCTGTGAGAAGCTGTCACCGTGGGCTGAAAATCTTCAAATTGTCCGAAGATGCAGCGAGTCTATTGCTTGGAAAGCTTGTGCCAATCCAAAAGGGATAAGATGGGCATACACTGGAAAGCCAACAAAAGTTGCTAGCCCAAACTGGGGTGACATGAAGGACTCAAGTCCAAGTAGAAGCCAGCAGGTCCCTCCTGATTGGTGGTTTGAAGATGTTTCGATTCTAACGATCGATCATTTTGTCAGAGTTATTACCGCAATTAAGGTAAAGGGGATGAGATTTGAACTGATTGGAGCTGCAATGATGCATTACGCATCTAAGTGGCTTCCAGGTTTGATCAACGAAGGCACAGGTACAGCTGATGAAGGAAGCAACAGCAGCAATAGTACAAGTAATAGTAGCGGTAGTTGGAAAGGTGGACTTCATATGATTCTGGCAGGAAATAAAGATGAGTCTTCAAGGGTTCAGGCCAAAGATCAACGGATGATCATTGAGAGCCTTATCAGCATAATCCCACCACAGAAGGATAGTGTCTCGTGCAGCTTCCTTCTTCAGCTTTTGAGAATGGCAAACATGCTGAAAGTAGCACCTGCTTTGGTTACTGAGTTGGAAAAACGGGTGGGAATGCAGTTCGAACAGGCTACTTTGGCGGATCGTTCTTATTCCTTCTTACAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009987 GO:0016020 GO:0016567 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0070647 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

388

Amino Acids

42.98

Weight (kDa)

6.13

Isoelectric Point (pI)

46.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPH3	PF03000	228 - 380	4.9e-39	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1084
Acc36I	ACCTGC	3 cut(s)	150, 661, 1084
AciI	CCGC	3 cut(s)	741, 888, 1136
AclWI	GGATC	1 cut(s)	1146
AcsI	RAATTY	2 cut(s)	166, 308
AcuI	CTGAAG	1 cut(s)	1022
AfaI	GTAC	3 cut(s)	377, 841, 874
AfiI	CCNNNNNNNGG	2 cut(s)	631, 632
AgsI	TTSAA	9 cut(s)	152, 198, 383, 421, 484, 524, 695, 770, 945
AjnI	CCWGG	2 cut(s)	274, 814
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	3 cut(s)	8, 459, 1024
AlwI	GGATC	1 cut(s)	1146
AoxI	GGCC	2 cut(s)	288, 954
ApeKI	GCWGC	7 cut(s)	302, 341, 368, 540, 782, 864, 1026
ApoI	RAATTY	2 cut(s)	166, 308
Asp700I	GAANNNNTTC	1 cut(s)	519
AspS9I	GGNCC	3 cut(s)	244, 281, 673
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	2 cut(s)	495, 647
AsuII	TTCGAA	1 cut(s)	1119
AsuNHI	GCTAGC	2 cut(s)	298, 620
AvaII	GGWCC	3 cut(s)	244, 281, 673
BanII	GRGCYC	1 cut(s)	99
BauI	CACGAG	1 cut(s)	1021
BbsI	GAAGAC	1 cut(s)	933
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	7 cut(s)	289, 353, 355, 552, 769, 876, 1038
BccI	CCATC	2 cut(s)	80, 582
BcgI	CGANNNNNNTGC	4 cut(s)	284, 318, 533, 567
BciT130I	CCWGG	2 cut(s)	276, 816
BciVI	GTATCC	1 cut(s)	195
BclI	TGATCA	2 cut(s)	822, 972
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	3 cut(s)	8, 459, 1024
BfaI	CTAG	3 cut(s)	146, 299, 621
BfmI	CTRYAG	1 cut(s)	369
BfuAI	ACCTGC	3 cut(s)	150, 661, 1084
BfuI	GTATCC	1 cut(s)	195
BisI	GCNGC	7 cut(s)	303, 342, 369, 541, 783, 865, 1027
BlsI	GCNGC	7 cut(s)	304, 343, 370, 542, 784, 866, 1028
Bme1390I	CCNGG	3 cut(s)	242, 276, 816
Bme18I	GGWCC	3 cut(s)	244, 281, 673
BmgT120I	GGNCC	3 cut(s)	244, 281, 673
BmiI	GGNNCC	1 cut(s)	675
BmrFI	CCNGG	3 cut(s)	242, 276, 816
BmrI	ACTGGG	1 cut(s)	640
BmsI	GCATC	3 cut(s)	527, 780, 809
BmtI	GCTAGC	2 cut(s)	302, 624
BmuI	ACTGGG	1 cut(s)	640
BoxI	GACNNNNGTC	1 cut(s)	651
BpiI	GAAGAC	1 cut(s)	933
Bpu14I	TTCGAA	1 cut(s)	1119
BpuEI	CTTGAG	2 cut(s)	379, 634
BpuMI	CCSGG	1 cut(s)	242
Bsa29I	ATCGAT	1 cut(s)	717
BsaJI	CCNNGG	1 cut(s)	506
Bsc4I	CCNNNNNNNGG	2 cut(s)	631, 632
Bse1I	ACTGG	2 cut(s)	604, 635
Bse3DI	GCAATG	1 cut(s)	792
BseBI	CCWGG	2 cut(s)	276, 816
BseCI	ATCGAT	1 cut(s)	717
BseDI	CCNNGG	1 cut(s)	506
BseGI	GGATG	5 cut(s)	62, 166, 271, 765, 975
BseLI	CCNNNNNNNGG	2 cut(s)	631, 632
BseMI	GCAATG	1 cut(s)	792
BseMII	CTCAG	4 cut(s)	9, 239, 417, 1080
BseNI	ACTGG	2 cut(s)	604, 635
BseXI	GCAGC	7 cut(s)	289, 353, 355, 552, 769, 876, 1038
BsgI	GTGCAG	1 cut(s)	1045
Bsh1285I	CGRYCG	1 cut(s)	717
BshFI	GGCC	2 cut(s)	290, 956
BshVI	ATCGAT	1 cut(s)	717
BsiEI	CGRYCG	1 cut(s)	717
BsiHKAI	GWGCWC	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	242
BslFI	GGGAC	1 cut(s)	659
BslI	CCNNNNNNNGG	2 cut(s)	631, 632
BsmAI	GTCTC	3 cut(s)	8, 459, 1024
BsmFI	GGGAC	1 cut(s)	659
BsmI	GAATGC	1 cut(s)	1116
BsnI	GGCC	2 cut(s)	290, 956
Bsp119I	TTCGAA	1 cut(s)	1119
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	9 cut(s)	210, 268, 331, 714, 718, 822, 961, 972, 1138
BspACI	CCGC	3 cut(s)	741, 888, 1136
BspANI	GGCC	2 cut(s)	290, 956
BspCNI	CTCAG	5 cut(s)	4, 10, 240, 418, 1081
BspDI	ATCGAT	1 cut(s)	717
BspLI	GGNNCC	1 cut(s)	675
BspMAI	CTGCAG	1 cut(s)	373
BspMI	ACCTGC	3 cut(s)	150, 661, 1084
BspOI	GCTAGC	2 cut(s)	302, 624
BspPI	GGATC	1 cut(s)	1146
BspT104I	TTCGAA	1 cut(s)	1119
BsrDI	GCAATG	1 cut(s)	792
BsrI	ACTGG	2 cut(s)	604, 635
BssECI	CCNNGG	1 cut(s)	506
BssMI	GATC	9 cut(s)	210, 268, 331, 714, 718, 822, 961, 972, 1138
BssSI	CACGAG	1 cut(s)	1021
Bst2BI	CACGAG	1 cut(s)	1021
Bst2UI	CCWGG	2 cut(s)	276, 816
Bst4CI	ACNGT	1 cut(s)	507
BstBI	TTCGAA	1 cut(s)	1119
BstC8I	GCNNGC	3 cut(s)	300, 622, 668
BstDEI	CTNAG	7 cut(s)	12, 18, 248, 426, 437, 804, 1089
BstDSI	CCRYGG	1 cut(s)	506
BstF5I	GGATG	5 cut(s)	62, 166, 271, 765, 975
BstKTI	GATC	9 cut(s)	213, 271, 334, 717, 721, 825, 964, 975, 1141
BstMAI	GTCTC	3 cut(s)	8, 459, 1024
BstMBI	GATC	9 cut(s)	210, 268, 331, 714, 718, 822, 961, 972, 1138
BstMCI	CGRYCG	1 cut(s)	717
BstMWI	GCNNNNNNNGC	4 cut(s)	560, 864, 990, 1133
BstNI	CCWGG	2 cut(s)	276, 816
BstNSI	RCATGY	1 cut(s)	1063
BstPAI	GACNNNNGTC	1 cut(s)	651
BstSCI	CCNGG	3 cut(s)	240, 274, 814
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	7 cut(s)	289, 353, 355, 552, 769, 876, 1038
BstV2I	GAAGAC	1 cut(s)	933
Bsu15I	ATCGAT	1 cut(s)	717
BsuI	GTATCC	1 cut(s)	195
BsuRI	GGCC	2 cut(s)	290, 956
BsuTUI	ATCGAT	1 cut(s)	717
BtgI	CCRYGG	1 cut(s)	506
BtsCI	GGATG	5 cut(s)	62, 166, 271, 765, 975
BtsIMutI	CAGTG	1 cut(s)	597
BveI	ACCTGC	3 cut(s)	150, 661, 1084
Cac8I	GCNNGC	3 cut(s)	300, 622, 668
Cfr13I	GGNCC	3 cut(s)	244, 281, 673
ClaI	ATCGAT	1 cut(s)	717
Csp6I	GTAC	3 cut(s)	376, 840, 873
CviAII	CATG	3 cut(s)	459, 640, 1060
CviQI	GTAC	3 cut(s)	376, 840, 873
DdeI	CTNAG	7 cut(s)	12, 18, 248, 426, 437, 804, 1089
DpnI	GATC	9 cut(s)	212, 270, 333, 716, 720, 824, 963, 974, 1140
DpnII	GATC	9 cut(s)	210, 268, 331, 714, 718, 822, 961, 972, 1138
EciI	GGCGGA	1 cut(s)	1151
Ecl136II	GAGCTC	1 cut(s)	97
Eco147I	AGGCCT	1 cut(s)	290
Eco24I	GRGCYC	1 cut(s)	99
Eco32I	GATATC	1 cut(s)	130
Eco47I	GGWCC	3 cut(s)	244, 281, 673
Eco53kI	GAGCTC	1 cut(s)	97
Eco57I	CTGAAG	1 cut(s)	1022
EcoICRI	GAGCTC	1 cut(s)	97
EcoO109I	RGGNCCY	1 cut(s)	673
EcoRII	CCWGG	2 cut(s)	274, 814
EcoRV	GATATC	1 cut(s)	130
EcoT22I	ATGCAT	1 cut(s)	795
EcoT38I	GRGCYC	1 cut(s)	99
FaeI	CATG	3 cut(s)	462, 643, 1063
FalI	AAGNNNNNCTT	4 cut(s)	396, 428, 891, 923
FaqI	GGGAC	1 cut(s)	659
FatI	CATG	3 cut(s)	458, 639, 1059
FauNDI	CATATG	1 cut(s)	912
FbaI	TGATCA	2 cut(s)	822, 972
Fnu4HI	GCNGC	7 cut(s)	303, 342, 369, 541, 783, 865, 1027
FokI	GGATG	5 cut(s)	49, 173, 278, 772, 982
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	7 cut(s)	303, 342, 369, 541, 783, 865, 1027
FspBI	CTAG	3 cut(s)	146, 299, 621
GluI	GCNGC	7 cut(s)	303, 342, 369, 541, 783, 865, 1027
HaeIII	GGCC	2 cut(s)	290, 956
HapII	CCGG	1 cut(s)	242
Hin1II	CATG	3 cut(s)	462, 643, 1063
HindIII	AAGCTT	1 cut(s)	561
HinfI	GANTC	9 cut(s)	8, 20, 219, 467, 545, 647, 706, 916, 938
HpaII	CCGG	1 cut(s)	242
HphI	GGTGA	2 cut(s)	495, 647
Hpy166II	GTNNAC	2 cut(s)	281, 905
Hpy188I	TCNGA	3 cut(s)	13, 533, 731
Hpy188III	TCNNGA	1 cut(s)	680
Hpy8I	GTNNAC	2 cut(s)	281, 905
HpyAV	CCTTC	8 cut(s)	301, 398, 637, 824, 845, 1003, 1043, 1162
HpyCH4III	ACNGT	1 cut(s)	507
HpyCH4V	TGCA	7 cut(s)	178, 371, 540, 785, 793, 1026, 1114
HpyF10VI	GCNNNNNNNGC	4 cut(s)	560, 864, 990, 1133
HpyF3I	CTNAG	7 cut(s)	12, 18, 248, 426, 437, 804, 1089
Hsp92II	CATG	3 cut(s)	462, 643, 1063
Ksp22I	TGATCA	2 cut(s)	822, 972
Kzo9I	GATC	9 cut(s)	210, 268, 331, 714, 718, 822, 961, 972, 1138
LmnI	GCTCC	1 cut(s)	779
Lsp1109I	GCAGC	7 cut(s)	289, 353, 355, 552, 769, 876, 1038
LweI	GCATC	3 cut(s)	527, 780, 809
MaeI	CTAG	3 cut(s)	146, 299, 621
MaeIII	GTNAC	3 cut(s)	501, 635, 1084
MalI	GATC	9 cut(s)	212, 270, 333, 716, 720, 824, 963, 974, 1140
MboI	GATC	9 cut(s)	210, 268, 331, 714, 718, 822, 961, 972, 1138
MboII	GAAGA	8 cut(s)	263, 409, 413, 512, 546, 707, 933, 1028
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	6 cut(s)	166, 230, 308, 321, 525, 744
MlyI	GAGTC	6 cut(s)	29, 228, 461, 554, 641, 947
MmeI	TCCRAC	3 cut(s)	7, 875, 1074
MnlI	CCTC	5 cut(s)	23, 385, 421, 466, 687
Mph1103I	ATGCAT	1 cut(s)	795
MroXI	GAANNNNTTC	1 cut(s)	519
MseI	TTAA	2 cut(s)	78, 747
MslI	CAYNNNNRTG	2 cut(s)	476, 805
MspA1I	CMGCKG	1 cut(s)	845
MspI	CCGG	1 cut(s)	242
MspR9I	CCNGG	3 cut(s)	242, 276, 816
Mva1269I	GAATGC	1 cut(s)	1116
MvaI	CCWGG	2 cut(s)	276, 816
MwoI	GCNNNNNNNGC	4 cut(s)	560, 864, 990, 1133
NciI	CCSGG	1 cut(s)	242
NdeI	CATATG	1 cut(s)	912
NdeII	GATC	9 cut(s)	210, 268, 331, 714, 718, 822, 961, 972, 1138
NheI	GCTAGC	2 cut(s)	298, 620
NlaIII	CATG	3 cut(s)	462, 643, 1063
NlaIV	GGNNCC	1 cut(s)	675
NmuCI	GTSAC	2 cut(s)	501, 635
NsiI	ATGCAT	1 cut(s)	795
NspI	RCATGY	1 cut(s)	1063
NspV	TTCGAA	1 cut(s)	1119
PaqCI	CACCTGC	1 cut(s)	1084
PceI	AGGCCT	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	1 cut(s)	710
PctI	GAATGC	1 cut(s)	1116
PdmI	GAANNNNTTC	1 cut(s)	519
PfeI	GAWTC	3 cut(s)	8, 706, 916
PflFI	GACNNNGTC	1 cut(s)	19
PkrI	GCNGC	7 cut(s)	304, 343, 370, 542, 784, 866, 1028
Ple19I	CGATCG	1 cut(s)	717
PleI	GAGTC	6 cut(s)	28, 227, 461, 553, 641, 946
PpsI	GAGTC	6 cut(s)	28, 227, 461, 553, 641, 946
PpuMI	RGGWCCY	1 cut(s)	673
PshAI	GACNNNNGTC	1 cut(s)	651
Psp124BI	GAGCTC	1 cut(s)	99
Psp5II	RGGWCCY	1 cut(s)	673
Psp6I	CCWGG	2 cut(s)	274, 814
PspGI	CCWGG	2 cut(s)	274, 814
PspN4I	GGNNCC	1 cut(s)	675
PspPI	GGNCC	3 cut(s)	244, 281, 673
PspPPI	RGGWCCY	1 cut(s)	673
PstI	CTGCAG	1 cut(s)	373
PsyI	GACNNNGTC	1 cut(s)	19
PvuI	CGATCG	1 cut(s)	717
PvuII	CAGCTG	1 cut(s)	845
RsaI	GTAC	3 cut(s)	377, 841, 874
RsaNI	GTAC	3 cut(s)	376, 840, 873
RseI	CAYNNNNRTG	2 cut(s)	476, 805
SacI	GAGCTC	1 cut(s)	99
SaqAI	TTAA	2 cut(s)	78, 747
SatI	GCNGC	7 cut(s)	303, 342, 369, 541, 783, 865, 1027
Sau3AI	GATC	9 cut(s)	210, 268, 331, 714, 718, 822, 961, 972, 1138
Sau96I	GGNCC	3 cut(s)	244, 281, 673
SchI	GAGTC	6 cut(s)	29, 228, 461, 554, 641, 947
ScrFI	CCNGG	3 cut(s)	242, 276, 816
SduI	GDGCHC	1 cut(s)	99
SfaNI	GCATC	3 cut(s)	527, 780, 809
SfcI	CTRYAG	1 cut(s)	369
SfuI	TTCGAA	1 cut(s)	1119
SinI	GGWCC	3 cut(s)	244, 281, 673
SmiMI	CAYNNNNRTG	2 cut(s)	476, 805
SmlI	CTYRAG	2 cut(s)	358, 649
SmoI	CTYRAG	2 cut(s)	358, 649
Sse9I	AATT	6 cut(s)	166, 230, 308, 321, 525, 744
SseBI	AGGCCT	1 cut(s)	290
SsiI	CCGC	3 cut(s)	741, 888, 1136
SspI	AATATT	1 cut(s)	349
SspMI	CTAG	3 cut(s)	146, 299, 621
SstI	GAGCTC	1 cut(s)	99
StuI	AGGCCT	1 cut(s)	290
StyD4I	CCNGG	3 cut(s)	240, 274, 814
TaaI	ACNGT	1 cut(s)	507
TaqI	TCGA	5 cut(s)	294, 330, 704, 717, 1119
TasI	AATT	6 cut(s)	166, 230, 308, 321, 525, 744
TatI	WGTACW	1 cut(s)	872
TfiI	GAWTC	3 cut(s)	8, 706, 916
Tru1I	TTAA	2 cut(s)	78, 747
Tru9I	TTAA	2 cut(s)	78, 747
TscAI	CASTG	1 cut(s)	604
TseFI	GTSAC	2 cut(s)	501, 635
TseI	GCWGC	7 cut(s)	302, 341, 368, 540, 782, 864, 1026
Tsp45I	GTSAC	2 cut(s)	501, 635
TspDTI	ATGAA	5 cut(s)	51, 243, 656, 864, 899
TspGWI	ACGGA	1 cut(s)	982
TspRI	CASTG	1 cut(s)	604
Tth111I	GACNNNGTC	1 cut(s)	19
VpaK11BI	GGWCC	3 cut(s)	244, 281, 673
XapI	RAATTY	2 cut(s)	166, 308
XceI	RCATGY	1 cut(s)	1063
XmnI	GAANNNNTTC	1 cut(s)	519
XspI	CTAG	3 cut(s)	146, 299, 621
Zsp2I	ATGCAT	1 cut(s)	795

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.