Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4424768 .. 4426020

Gene Structure 1253 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGAGGGTAGCTAGGCTTGTTGATAGTTATCTTACAGAGGTGTCCAGAGATAGAAGCCTCTCCCTAACAAAGTTTCAGGTACTGGCAGAAGCTTTGCCCGAGTCTGCAAGGATCTGCGATGATGGACTTTATAGAGCAGTTGATTCCTATCTTAAGGCCCATCCAACACTTTCTGAGCACGAAAGGAAGAGGCTTTGCCGGGTGATGGATTGCCAAAAGCTATCAGTTGATGCCTGCATGCATGCTGCCCAAAACGAAAGACTCCCATTGAGAGTGGTAGTGCAGGTCCTTTTCTGTGAACAAGTTAAAATAAGCAATGCATTAGCCACAAGCTCCCTCAAAGAAGCTGTAGACTCTCAGTATCAGCCAATGGTTTCGAATCGAAAAACACTACTCGAAGGGACCCCGCAGTCGTTCCAAGAAGGATGGGCTGCCGCCAAAAAAGACATTAACACGGTTAAATTCGAACTGGAGAGTGTGAAAGCCAAGCACCTAGAGCTCCAGCATGACATGGAGAATTTGCAGAGACAGTTTGATAAGATGTCAAAGAATAAACAGACATCGGCATGGAGCAGTGGGTGGAAGAAACTAAGCAAACAACTCACAAAGAACACAAATTTAGAAAACCAGAACATCGGGCCGGAGCACACAACGGCTGCAGATCAGCAGACTAGAAAGACACCTAGGAAGTGGAGAAATTCCATCTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009637 GO:0009638 GO:0009987 GO:0016020 GO:0016567 GO:0019538 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050896 GO:0070647 GO:0071704 GO:0071944 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BTB NPH3

Protein Analysis

237

Amino Acids

26.98

Weight (kDa)

9.34

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NPH3	PF03000	1 - 79	1.8e-39	NPH3 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	409
Acc36I	ACCTGC	1 cut(s)	274
AccI	GTMKAC	1 cut(s)	351
AciI	CCGC	2 cut(s)	407, 435
AclWI	GGATC	1 cut(s)	119
AcsI	RAATTY	4 cut(s)	461, 517, 616, 697
AfaI	GTAC	1 cut(s)	81
AfiI	CCNNNNNNNGG	1 cut(s)	205
AflII	CTTAAG	1 cut(s)	152
AluBI	AGCT	6 cut(s)	11, 92, 220, 333, 347, 499
AluI	AGCT	6 cut(s)	11, 92, 220, 333, 347, 499
Alw21I	GWGCWC	3 cut(s)	180, 501, 648
Alw26I	GTCTC	1 cut(s)	520
AlwI	GGATC	1 cut(s)	119
AlwNI	CAGNNNCTG	1 cut(s)	82
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	2 cut(s)	156, 638
ApeKI	GCWGC	3 cut(s)	245, 431, 656
ApoI	RAATTY	4 cut(s)	461, 517, 616, 697
AspA2I	CCTAGG	1 cut(s)	683
AspS9I	GGNCC	4 cut(s)	157, 286, 402, 638
AsuC2I	CCSGG	1 cut(s)	200
AsuHPI	GGTGA	1 cut(s)	214
AsuII	TTCGAA	2 cut(s)	377, 465
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	2 cut(s)	286, 402
AvrII	CCTAGG	1 cut(s)	683
BanII	GRGCYC	1 cut(s)	501
Bbv12I	GWGCWC	3 cut(s)	180, 501, 648
BbvI	GCAGC	3 cut(s)	232, 418, 643
BccI	CCATC	5 cut(s)	116, 168, 199, 420, 710
BceAI	ACGGC	1 cut(s)	669
BcnI	CCSGG	1 cut(s)	200
BcoDI	GTCTC	1 cut(s)	520
BfaI	CTAG	4 cut(s)	12, 494, 672, 684
BfmI	CTRYAG	2 cut(s)	348, 657
BfrI	CTTAAG	1 cut(s)	152
BfuAI	ACCTGC	1 cut(s)	274
BisI	GCNGC	4 cut(s)	246, 432, 435, 657
BlnI	CCTAGG	1 cut(s)	683
BlsI	GCNGC	4 cut(s)	247, 433, 436, 658
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	2 cut(s)	286, 402
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	4 cut(s)	157, 286, 402, 638
BmiI	GGNNCC	2 cut(s)	403, 404
BmrFI	CCNGG	1 cut(s)	200
BmsI	GCATC	1 cut(s)	220
BpmI	CTGGAG	2 cut(s)	485, 491
Bpu14I	TTCGAA	2 cut(s)	377, 465
BpuMI	CCSGG	1 cut(s)	200
BsaBI	GATNNNNATC	2 cut(s)	27, 147
BsaJI	CCNNGG	1 cut(s)	683
Bsc4I	CCNNNNNNNGG	1 cut(s)	205
Bse1I	ACTGG	2 cut(s)	87, 474
Bse3DI	GCAATG	1 cut(s)	322
Bse8I	GATNNNNATC	2 cut(s)	27, 147
BseDI	CCNNGG	1 cut(s)	683
BseGI	GGATG	2 cut(s)	160, 431
BseJI	GATNNNNATC	2 cut(s)	27, 147
BseLI	CCNNNNNNNGG	1 cut(s)	205
BseMI	GCAATG	1 cut(s)	322
BseMII	CTCAG	2 cut(s)	165, 371
BseNI	ACTGG	2 cut(s)	87, 474
BseXI	GCAGC	3 cut(s)	232, 418, 643
BsgI	GTGCAG	1 cut(s)	302
BshFI	GGCC	2 cut(s)	158, 640
BsiHKAI	GWGCWC	3 cut(s)	180, 501, 648
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	2 cut(s)	199, 641
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	1 cut(s)	205
BsmAI	GTCTC	1 cut(s)	520
BsmFI	GGGAC	1 cut(s)	415
BsnI	GGCC	2 cut(s)	158, 640
BsoBI	CYCGRG	1 cut(s)	98
Bsp119I	TTCGAA	2 cut(s)	377, 465
Bsp1286I	GDGCHC	3 cut(s)	180, 501, 648
Bsp143I	GATC	2 cut(s)	111, 661
BspACI	CCGC	2 cut(s)	407, 435
BspANI	GGCC	2 cut(s)	158, 640
BspCNI	CTCAG	2 cut(s)	166, 370
BspLI	GGNNCC	2 cut(s)	403, 404
BspMAI	CTGCAG	1 cut(s)	661
BspMI	ACCTGC	1 cut(s)	274
BspPI	GGATC	1 cut(s)	119
BspT104I	TTCGAA	2 cut(s)	377, 465
BspTI	CTTAAG	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	322
BsrI	ACTGG	2 cut(s)	87, 474
BssECI	CCNNGG	1 cut(s)	683
BssMI	GATC	2 cut(s)	111, 661
BssT1I	CCWWGG	1 cut(s)	683
Bst4CI	ACNGT	2 cut(s)	457, 531
Bst6I	CTCTTC	1 cut(s)	182
BstAFI	CTTAAG	1 cut(s)	152
BstBI	TTCGAA	2 cut(s)	377, 465
BstC8I	GCNNGC	3 cut(s)	235, 239, 243
BstDEI	CTNAG	3 cut(s)	174, 357, 590
BstF5I	GGATG	2 cut(s)	160, 431
BstKTI	GATC	2 cut(s)	114, 664
BstMAI	GTCTC	1 cut(s)	520
BstMBI	GATC	2 cut(s)	111, 661
BstMWI	GCNNNNNNNGC	1 cut(s)	496
BstNSI	RCATGY	2 cut(s)	241, 245
BstSCI	CCNGG	1 cut(s)	198
BstSFI	CTRYAG	2 cut(s)	348, 657
BstV1I	GCAGC	3 cut(s)	232, 418, 643
BstX2I	RGATCY	1 cut(s)	111
BstYI	RGATCY	1 cut(s)	111
BsuRI	GGCC	2 cut(s)	158, 640
BtgZI	GCGATG	1 cut(s)	132
BtsCI	GGATG	2 cut(s)	160, 431
BtsI	GCAGTG	1 cut(s)	580
BtsIMutI	CAGTG	1 cut(s)	580
BveI	ACCTGC	1 cut(s)	274
Cac8I	GCNNGC	3 cut(s)	235, 239, 243
CaiI	CAGNNNCTG	1 cut(s)	82
Cfr13I	GGNCC	4 cut(s)	157, 286, 402, 638
Csp6I	GTAC	1 cut(s)	80
CviAII	CATG	5 cut(s)	238, 242, 506, 511, 567
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	3 cut(s)	174, 357, 590
DpnI	GATC	2 cut(s)	113, 663
DpnII	GATC	2 cut(s)	111, 661
DrdI	GACNNNNNNGTC	1 cut(s)	409
DseDI	GACNNNNNNGTC	1 cut(s)	409
Eam1104I	CTCTTC	1 cut(s)	182
EarI	CTCTTC	1 cut(s)	182
Ecl136II	GAGCTC	1 cut(s)	499
Eco130I	CCWWGG	1 cut(s)	683
Eco24I	GRGCYC	1 cut(s)	501
Eco47I	GGWCC	2 cut(s)	286, 402
Eco53kI	GAGCTC	1 cut(s)	499
Eco88I	CYCGRG	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	499
EcoO109I	RGGNCCY	2 cut(s)	286, 402
EcoT14I	CCWWGG	1 cut(s)	683
EcoT22I	ATGCAT	2 cut(s)	243, 322
EcoT38I	GRGCYC	1 cut(s)	501
ErhI	CCWWGG	1 cut(s)	683
FaeI	CATG	5 cut(s)	241, 245, 509, 514, 570
FaiI	YATR	6 cut(s)	132, 239, 243, 507, 512, 568
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	5 cut(s)	237, 241, 505, 510, 566
FauI	CCCGC	1 cut(s)	414
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	4 cut(s)	246, 432, 435, 657
FokI	GGATG	2 cut(s)	147, 438
FriOI	GRGCYC	1 cut(s)	501
Fsp4HI	GCNGC	4 cut(s)	246, 432, 435, 657
FspBI	CTAG	4 cut(s)	12, 494, 672, 684
GluI	GCNGC	4 cut(s)	246, 432, 435, 657
GsuI	CTGGAG	2 cut(s)	485, 491
HaeIII	GGCC	2 cut(s)	158, 640
HapII	CCGG	2 cut(s)	199, 641
Hin1II	CATG	5 cut(s)	241, 245, 509, 514, 570
HindIII	AAGCTT	1 cut(s)	90
HinfI	GANTC	5 cut(s)	101, 143, 261, 353, 379
HpaII	CCGG	2 cut(s)	199, 641
HphI	GGTGA	1 cut(s)	214
Hpy166II	GTNNAC	2 cut(s)	299, 352
Hpy188I	TCNGA	1 cut(s)	175
Hpy188III	TCNNGA	2 cut(s)	45, 708
Hpy8I	GTNNAC	2 cut(s)	299, 352
HpyAV	CCTTC	2 cut(s)	392, 416
HpyCH4III	ACNGT	2 cut(s)	457, 531
HpyCH4V	TGCA	7 cut(s)	107, 237, 241, 283, 320, 523, 659
HpyF10VI	GCNNNNNNNGC	1 cut(s)	496
HpyF3I	CTNAG	3 cut(s)	174, 357, 590
Hsp92II	CATG	5 cut(s)	241, 245, 509, 514, 570
KflI	GGGWCCC	1 cut(s)	402
Kzo9I	GATC	2 cut(s)	111, 661
LmnI	GCTCC	4 cut(s)	338, 504, 570, 643
Lsp1109I	GCAGC	3 cut(s)	232, 418, 643
LweI	GCATC	1 cut(s)	220
MaeI	CTAG	4 cut(s)	12, 494, 672, 684
MalI	GATC	2 cut(s)	113, 663
MboI	GATC	2 cut(s)	111, 661
MboII	GAAGA	2 cut(s)	199, 595
MflI	RGATCY	1 cut(s)	111
MhlI	GDGCHC	3 cut(s)	180, 501, 648
MluCI	AATT	4 cut(s)	461, 517, 616, 697
MlyI	GAGTC	3 cut(s)	110, 255, 347
MmeI	TCCRAC	1 cut(s)	188
MnlI	CCTC	4 cut(s)	31, 68, 183, 347
Mph1103I	ATGCAT	2 cut(s)	243, 322
MseI	TTAA	4 cut(s)	153, 306, 450, 459
MslI	CAYNNNNRTG	1 cut(s)	565
MspCI	CTTAAG	1 cut(s)	152
MspI	CCGG	2 cut(s)	199, 641
MspR9I	CCNGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	496
NciI	CCSGG	1 cut(s)	200
NdeII	GATC	2 cut(s)	111, 661
NlaIII	CATG	5 cut(s)	241, 245, 509, 514, 570
NlaIV	GGNNCC	2 cut(s)	403, 404
NsiI	ATGCAT	2 cut(s)	243, 322
NspI	RCATGY	2 cut(s)	241, 245
NspV	TTCGAA	2 cut(s)	377, 465
PaeI	GCATGC	2 cut(s)	241, 245
PfeI	GAWTC	2 cut(s)	143, 379
PkrI	GCNGC	4 cut(s)	247, 433, 436, 658
PleI	GAGTC	3 cut(s)	109, 255, 347
PpsI	GAGTC	3 cut(s)	109, 255, 347
PpuMI	RGGWCCY	2 cut(s)	286, 402
Psp124BI	GAGCTC	1 cut(s)	501
Psp5II	RGGWCCY	2 cut(s)	286, 402
PspN4I	GGNNCC	2 cut(s)	403, 404
PspPI	GGNCC	4 cut(s)	157, 286, 402, 638
PspPPI	RGGWCCY	2 cut(s)	286, 402
PstI	CTGCAG	1 cut(s)	661
PstNI	CAGNNNCTG	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	111
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
RseI	CAYNNNNRTG	1 cut(s)	565
SacI	GAGCTC	1 cut(s)	501
SaqAI	TTAA	4 cut(s)	153, 306, 450, 459
SatI	GCNGC	4 cut(s)	246, 432, 435, 657
Sau3AI	GATC	2 cut(s)	111, 661
Sau96I	GGNCC	4 cut(s)	157, 286, 402, 638
SchI	GAGTC	3 cut(s)	110, 255, 347
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	3 cut(s)	180, 501, 648
SfaNI	GCATC	1 cut(s)	220
SfcI	CTRYAG	2 cut(s)	348, 657
SfuI	TTCGAA	2 cut(s)	377, 465
SinI	GGWCC	2 cut(s)	286, 402
SmiMI	CAYNNNNRTG	1 cut(s)	565
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
SphI	GCATGC	2 cut(s)	241, 245
Sse9I	AATT	4 cut(s)	461, 517, 616, 697
SsiI	CCGC	2 cut(s)	407, 435
SspMI	CTAG	4 cut(s)	12, 494, 672, 684
SstI	GAGCTC	1 cut(s)	501
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	1 cut(s)	683
TaaI	ACNGT	2 cut(s)	457, 531
TaqI	TCGA	4 cut(s)	377, 382, 396, 465
TasI	AATT	4 cut(s)	461, 517, 616, 697
TauI	GCSGC	1 cut(s)	437
TfiI	GAWTC	2 cut(s)	143, 379
Tru1I	TTAA	4 cut(s)	153, 306, 450, 459
Tru9I	TTAA	4 cut(s)	153, 306, 450, 459
TscAI	CASTG	1 cut(s)	580
TseI	GCWGC	3 cut(s)	245, 431, 656
TspRI	CASTG	1 cut(s)	580
Vha464I	CTTAAG	1 cut(s)	152
VpaK11BI	GGWCC	2 cut(s)	286, 402
XapI	RAATTY	4 cut(s)	461, 517, 616, 697
XceI	RCATGY	2 cut(s)	241, 245
XmaJI	CCTAGG	1 cut(s)	683
XmiI	GTMKAC	1 cut(s)	351
XspI	CTAG	4 cut(s)	12, 494, 672, 684
Zsp2I	ATGCAT	2 cut(s)	243, 322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.