pycom05g03980

Isochorismatase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Reverse (-)
4591571 .. 4591939
369 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 369 bp
ATGCTTGCAGTTGCAGGCCCCAACCCCCAAGAGAGGCAAACACTGCGGAATCCGCAACAAGCAACCGAAACAAACAAGCTCCCTCGTTCTCTCATATATATACGTCCATTATTCTACTCAAATGCAGCTCTAAGATGGCTGGAGAACGAACCAAATGCAACAACCGGGCGCAAAGATTGCTGGGACGGGTTCTTGGCTTCAATGGAACCAGATGGTTCGAATGTTTTTCTACAACGTATGGTGGTCAAGTTAATTGGTTGTAGGAGTATGCACGGACATCTGCGTGCTGGACTTTGTTTGCTCTACATTATCAGCAAGAAACCGCAGTTTTCTTACTCCTTTGGAAGATGTAGTCGTTTATTCGCGTGA

Protein Analysis

123

Amino Acids

13.88

Weight (kDa)

9.8

Isoelectric Point (pI)

55.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 365
AciI CCGC 3 cut(s) 46, 53, 323
AfiI CCNNNNNNNGG 1 cut(s) 33
AgsI TTSAA 1 cut(s) 201
AluBI AGCT 2 cut(s) 79, 128
AluI AGCT 2 cut(s) 79, 128
AoxI GGCC 1 cut(s) 16
ApeKI GCWGC 1 cut(s) 125
AspLEI GCGC 1 cut(s) 171
AspS9I GGNCC 1 cut(s) 17
AsuC2I CCSGG 1 cut(s) 166
AsuII TTCGAA 1 cut(s) 218
BbvI GCAGC 1 cut(s) 137
BccI CCATC 2 cut(s) 129, 206
BcgI CGANNNNNNTGC 2 cut(s) 137, 171
BcnI CCSGG 1 cut(s) 166
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
Bme1390I CCNGG 1 cut(s) 166
BmgT120I GGNCC 1 cut(s) 17
BmiI GGNNCC 2 cut(s) 19, 207
BmrFI CCNGG 1 cut(s) 166
BpmI CTGGAG 1 cut(s) 161
Bpu14I TTCGAA 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 166
Bsc4I CCNNNNNNNGG 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 33
BseXI GCAGC 1 cut(s) 137
BseYI CCCAGC 1 cut(s) 180
Bsh1236I CGCG 1 cut(s) 365
BshFI GGCC 1 cut(s) 18
BsiSI CCGG 1 cut(s) 165
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 33
BsmFI GGGAC 1 cut(s) 197
BsnI GGCC 1 cut(s) 18
Bsp119I TTCGAA 1 cut(s) 218
BspACI CCGC 3 cut(s) 46, 53, 323
BspANI GGCC 1 cut(s) 18
BspFNI CGCG 1 cut(s) 365
BspLI GGNNCC 2 cut(s) 19, 207
BspT104I TTCGAA 1 cut(s) 218
BstAPI GCANNNNNTGC 2 cut(s) 43, 177
BstBI TTCGAA 1 cut(s) 218
BstC8I GCNNGC 3 cut(s) 6, 16, 285
BstDEI CTNAG 1 cut(s) 131
BstFNI CGCG 1 cut(s) 365
BstHHI GCGC 1 cut(s) 171
BstMWI GCNNNNNNNGC 3 cut(s) 43, 52, 177
BstSCI CCNGG 1 cut(s) 164
BstUI CGCG 1 cut(s) 365
BstV1I GCAGC 1 cut(s) 137
BsuRI GGCC 1 cut(s) 18
BtsI GCAGTG 1 cut(s) 41
BtsIMutI CAGTG 1 cut(s) 41
Cac8I GCNNGC 3 cut(s) 6, 16, 285
CfoI GCGC 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 17
CviJI RGCY 5 cut(s) 18, 79, 128, 139, 197
CviKI_1 RGCY 5 cut(s) 18, 79, 128, 139, 197
DdeI CTNAG 1 cut(s) 131
EcoO109I RGGNCCY 1 cut(s) 17
FaiI YATR 6 cut(s) 95, 97, 99, 101, 239, 269
FaqI GGGAC 1 cut(s) 197
Fnu4HI GCNGC 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 126
GlaI GCGC 1 cut(s) 170
GluI GCNGC 1 cut(s) 126
GsaI CCCAGC 1 cut(s) 184
GsuI CTGGAG 1 cut(s) 161
HaeIII GGCC 1 cut(s) 18
HapII CCGG 1 cut(s) 165
HhaI GCGC 1 cut(s) 171
Hin6I GCGC 1 cut(s) 169
HinP1I GCGC 1 cut(s) 169
HinfI GANTC 1 cut(s) 49
HpaII CCGG 1 cut(s) 165
HpyCH4IV ACGT 2 cut(s) 103, 235
HpyCH4V TGCA 5 cut(s) 8, 14, 125, 158, 271
HpyF10VI GCNNNNNNNGC 3 cut(s) 43, 52, 177
HpyF3I CTNAG 1 cut(s) 131
HpySE526I ACGT 2 cut(s) 103, 235
HspAI GCGC 1 cut(s) 169
LmnI GCTCC 1 cut(s) 84
LpnPI CCDG 5 cut(s) 125, 166, 178, 222, 273
Lsp1109I GCAGC 1 cut(s) 137
MaeII ACGT 2 cut(s) 103, 235
MboII GAAGA 1 cut(s) 357
MluCI AATT 1 cut(s) 252
MnlI CCTC 2 cut(s) 27, 93
MseI TTAA 1 cut(s) 251
MslI CAYNNNNRTG 1 cut(s) 282
MspI CCGG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 166
MvnI CGCG 1 cut(s) 365
MwoI GCNNNNNNNGC 3 cut(s) 43, 52, 177
NciI CCSGG 1 cut(s) 166
NlaIV GGNNCC 2 cut(s) 19, 207
NspV TTCGAA 1 cut(s) 218
PfeI GAWTC 1 cut(s) 49
PkrI GCNGC 1 cut(s) 127
PspFI CCCAGC 1 cut(s) 180
PspN4I GGNNCC 2 cut(s) 19, 207
PspPI GGNCC 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 282
SaqAI TTAA 1 cut(s) 251
SatI GCNGC 1 cut(s) 126
Sau96I GGNCC 1 cut(s) 17
ScrFI CCNGG 1 cut(s) 166
SetI ASST 4 cut(s) 81, 106, 130, 238
SfuI TTCGAA 1 cut(s) 218
SmiMI CAYNNNNRTG 1 cut(s) 282
Sse9I AATT 1 cut(s) 252
SsiI CCGC 3 cut(s) 46, 53, 323
StyD4I CCNGG 1 cut(s) 164
TaiI ACGT 2 cut(s) 106, 238
TaqI TCGA 1 cut(s) 218
TasI AATT 1 cut(s) 252
TfiI GAWTC 1 cut(s) 49
Tru1I TTAA 1 cut(s) 251
Tru9I TTAA 1 cut(s) 251
TscAI CASTG 1 cut(s) 48
TseI GCWGC 1 cut(s) 125
TspGWI ACGGA 1 cut(s) 288
TspRI CASTG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.