Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

4980518 .. 4981182

Gene Structure 665 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGTTAGATAGATTTAAAGTTGTTCATGAGAATATGGTATCATACGTGCAAAACAAAGTTCCTCATAAGACACTCAAGATATGGTGTTTACAATCACCAAGGCATTTTTATGGAGGTGATTGGAATCAGAACGGCAGTTGCTTGTTCAATAAGCTCCTTGAGGAGCAGCAACTTGACTTGTGGTTTGACCCCAACAATAATGGACCGAACAAAGAAGAAAGACTGTTGAATCGTCTGATTGAAGGCACATTACAAGGAACCGATATTCAACTGCTTAACCTGACTCAACTAAGTGAGTTCAAAGCAGGTGCCCATCCAACGATTTGGTTGGGACAAAAGGATGTCGTTTTAGTATGGGCCAGAATTGCATACACCGGTGCTTACTTGGTGTACCGGATACATGGGTTGACATATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008150 GO:0008374 GO:0009987 GO:0012505 GO:0016407 GO:0016413 GO:0016740 GO:0016746 GO:0016747 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071554

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PC-Esterase PMR5N

Protein Analysis

140

Amino Acids

16.25

Weight (kDa)

7.8

Isoelectric Point (pI)

38.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PC-Esterase	PF13839	3 - 114	3.2e-13	GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	296
Acc36I	ACCTGC	1 cut(s)	296
AccB1I	GGYRCC	1 cut(s)	308
AfaI	GTAC	1 cut(s)	392
AgeI	ACCGGT	1 cut(s)	374
AgsI	TTSAA	5 cut(s)	148, 229, 242, 269, 301
AluBI	AGCT	1 cut(s)	154
AluI	AGCT	1 cut(s)	154
AoxI	GGCC	1 cut(s)	357
ApeKI	GCWGC	1 cut(s)	166
ArsI	GACNNNNNNTTYG	2 cut(s)	167, 199
AsiGI	ACCGGT	1 cut(s)	374
AspS9I	GGNCC	2 cut(s)	203, 357
AsuHPI	GGTGA	2 cut(s)	87, 128
AvaII	GGWCC	1 cut(s)	203
BaeGI	GKGCMC	1 cut(s)	313
BaeI	ACNNNNGTAYC	1 cut(s)	389
BanI	GGYRCC	1 cut(s)	308
BarI	GAAGNNNNNNTAC	2 cut(s)	234, 266
BbvI	GCAGC	1 cut(s)	178
BccI	CCATC	1 cut(s)	321
BceAI	ACGGC	1 cut(s)	148
BciVI	GTATCC	1 cut(s)	390
BfuAI	ACCTGC	1 cut(s)	296
BfuI	GTATCC	1 cut(s)	390
BisI	GCNGC	1 cut(s)	167
BlsI	GCNGC	1 cut(s)	168
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	2 cut(s)	203, 357
BmiI	GGNNCC	2 cut(s)	259, 310
BpuEI	CTTGAG	2 cut(s)	59, 179
BsaAI	YACGTR	1 cut(s)	46
BsaBI	GATNNNNATC	1 cut(s)	123
BsaJI	CCNNGG	1 cut(s)	98
BsaWI	WCCGGW	2 cut(s)	374, 393
Bse118I	RCCGGY	1 cut(s)	374
Bse8I	GATNNNNATC	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	98
BseGI	GGATG	2 cut(s)	313, 346
BseJI	GATNNNNATC	1 cut(s)	123
BseRI	GAGGAG	1 cut(s)	176
BseSI	GKGCMC	1 cut(s)	313
BseXI	GCAGC	1 cut(s)	178
BshFI	GGCC	1 cut(s)	359
BshNI	GGYRCC	1 cut(s)	308
BshTI	ACCGGT	1 cut(s)	374
BsiSI	CCGG	2 cut(s)	375, 394
BslFI	GGGAC	1 cut(s)	345
BsmFI	GGGAC	1 cut(s)	345
BsnI	GGCC	1 cut(s)	359
Bsp1286I	GDGCHC	1 cut(s)	313
BspANI	GGCC	1 cut(s)	359
BspHI	TCATGA	1 cut(s)	25
BspLI	GGNNCC	2 cut(s)	259, 310
BspMI	ACCTGC	1 cut(s)	296
BspT107I	GGYRCC	1 cut(s)	308
BsrFI	RCCGGY	1 cut(s)	374
BssAI	RCCGGY	1 cut(s)	374
BssECI	CCNNGG	1 cut(s)	98
BssT1I	CCWWGG	1 cut(s)	98
Bst4CI	ACNGT	1 cut(s)	225
BstBAI	YACGTR	1 cut(s)	46
BstDEI	CTNAG	1 cut(s)	290
BstF5I	GGATG	2 cut(s)	313, 346
BstMWI	GCNNNNNNNGC	1 cut(s)	365
BstSLI	GKGCMC	1 cut(s)	313
BstV1I	GCAGC	1 cut(s)	178
BstXI	CCANNNNNNTGG	1 cut(s)	324
BsuI	GTATCC	1 cut(s)	390
BsuRI	GGCC	1 cut(s)	359
BtsCI	GGATG	2 cut(s)	313, 346
BveI	ACCTGC	1 cut(s)	296
CciI	TCATGA	1 cut(s)	25
Cfr10I	RCCGGY	1 cut(s)	374
Cfr13I	GGNCC	2 cut(s)	203, 357
Csp6I	GTAC	1 cut(s)	391
CspAI	ACCGGT	1 cut(s)	374
CviAII	CATG	2 cut(s)	26, 401
CviJI	RGCY	2 cut(s)	154, 359
CviKI_1	RGCY	2 cut(s)	154, 359
CviQI	GTAC	1 cut(s)	391
DdeI	CTNAG	1 cut(s)	290
DraI	TTTAAA	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	98
Eco47I	GGWCC	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	98
ErhI	CCWWGG	1 cut(s)	98
FaeI	CATG	2 cut(s)	29, 404
FaqI	GGGAC	1 cut(s)	345
FatI	CATG	2 cut(s)	25, 400
Fnu4HI	GCNGC	1 cut(s)	167
FokI	GGATG	2 cut(s)	300, 353
Fsp4HI	GCNGC	1 cut(s)	167
GluI	GCNGC	1 cut(s)	167
HaeIII	GGCC	1 cut(s)	359
HapII	CCGG	2 cut(s)	375, 394
Hin1II	CATG	2 cut(s)	29, 404
HincII	GTYRAC	1 cut(s)	408
HindII	GTYRAC	1 cut(s)	408
HinfI	GANTC	3 cut(s)	124, 229, 283
HpaII	CCGG	2 cut(s)	375, 394
HphI	GGTGA	2 cut(s)	87, 128
Hpy166II	GTNNAC	3 cut(s)	89, 391, 408
Hpy188I	TCNGA	2 cut(s)	129, 237
Hpy188III	TCNNGA	2 cut(s)	26, 76
Hpy8I	GTNNAC	3 cut(s)	89, 391, 408
HpyAV	CCTTC	1 cut(s)	236
HpyCH4III	ACNGT	1 cut(s)	225
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	2 cut(s)	49, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	365
HpyF3I	CTNAG	1 cut(s)	290
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	2 cut(s)	29, 404
LmnI	GCTCC	2 cut(s)	159, 163
LpnPI	CCDG	5 cut(s)	291, 293, 373, 388, 407
Lsp1109I	GCAGC	1 cut(s)	178
MaeII	ACGT	1 cut(s)	45
MboII	GAAGA	1 cut(s)	227
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	1 cut(s)	363
MlyI	GAGTC	1 cut(s)	277
MmeI	TCCRAC	1 cut(s)	341
MnlI	CCTC	3 cut(s)	72, 107, 154
MseI	TTAA	2 cut(s)	15, 276
MslI	CAYNNNNRTG	1 cut(s)	108
MspI	CCGG	2 cut(s)	375, 394
MwoI	GCNNNNNNNGC	1 cut(s)	365
NlaIII	CATG	2 cut(s)	29, 404
NlaIV	GGNNCC	2 cut(s)	259, 310
PagI	TCATGA	1 cut(s)	25
PaqCI	CACCTGC	1 cut(s)	296
PfeI	GAWTC	2 cut(s)	124, 229
PinAI	ACCGGT	1 cut(s)	374
PkrI	GCNGC	1 cut(s)	168
PleI	GAGTC	1 cut(s)	277
PpsI	GAGTC	1 cut(s)	277
Ppu21I	YACGTR	1 cut(s)	46
PspN4I	GGNNCC	2 cut(s)	259, 310
PspPI	GGNCC	2 cut(s)	203, 357
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
RseI	CAYNNNNRTG	1 cut(s)	108
SaqAI	TTAA	2 cut(s)	15, 276
SatI	GCNGC	1 cut(s)	167
Sau96I	GGNCC	2 cut(s)	203, 357
SchI	GAGTC	1 cut(s)	277
SduI	GDGCHC	1 cut(s)	313
SetI	ASST	5 cut(s)	48, 118, 156, 282, 310
SgrAI	CRCCGGYG	1 cut(s)	374
SinI	GGWCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	108
SmlI	CTYRAG	2 cut(s)	74, 158
SmoI	CTYRAG	2 cut(s)	74, 158
Sse9I	AATT	1 cut(s)	363
StyI	CCWWGG	1 cut(s)	98
TaaI	ACNGT	1 cut(s)	225
TaiI	ACGT	1 cut(s)	48
TaqII	GACCGA	1 cut(s)	220
TasI	AATT	1 cut(s)	363
TfiI	GAWTC	2 cut(s)	124, 229
Tru1I	TTAA	2 cut(s)	15, 276
Tru9I	TTAA	2 cut(s)	15, 276
TseI	GCWGC	1 cut(s)	166
TspDTI	ATGAA	1 cut(s)	14
VpaK11BI	GGWCC	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.