pycom05g04380

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Reverse (-)
5129849 .. 5130869
1021 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 279 bp
ATGACAAAAAACATAGTAGGTGGATTGTCTACCCTCCCATTTCCATACTCTCCCCATGCCCTCCTGTTCACTCGACGCATTTCTGAGGGGTGCAGCTTCTGGGTCCCCCATGGCTATGGTGGACGCCAGGCTCTTATACTGGGGAGGGGTCTCAAGGAGAAGGTCATCGCTTTGTGTCATAAAGTTGCAAAATTGGGAGATCATGCTGGGCAGTGGAATTTGAGAATTTTCTATTTGCAAGTGAAAGTTGAGCGCTCAAATCATTACCTCCGAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Sel1

Protein Analysis

93

Amino Acids

10.39

Weight (kDa)

10.18

Isoelectric Point (pI)

58.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 29
AcsI RAATTY 2 cut(s) 217, 225
AcyI GRCGYC 1 cut(s) 124
AfeI AGCGCT 1 cut(s) 254
AjnI CCWGG 1 cut(s) 126
AluBI AGCT 1 cut(s) 96
AluI AGCT 1 cut(s) 96
Alw26I GTCTC 1 cut(s) 155
AlwNI CAGNNNCTG 1 cut(s) 99
Aor51HI AGCGCT 1 cut(s) 254
ApeKI GCWGC 1 cut(s) 93
ApoI RAATTY 2 cut(s) 217, 225
AspLEI GCGC 1 cut(s) 255
AspS9I GGNCC 1 cut(s) 103
AvaII GGWCC 1 cut(s) 103
BbvI GCAGC 1 cut(s) 105
BciT130I CCWGG 1 cut(s) 128
BcoDI GTCTC 1 cut(s) 155
BfoI RGCGCY 1 cut(s) 256
BisI GCNGC 1 cut(s) 94
BlsI GCNGC 1 cut(s) 95
Bme1390I CCNGG 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 103
BmgT120I GGNCC 1 cut(s) 103
BmiI GGNNCC 2 cut(s) 104, 105
BmrFI CCNGG 1 cut(s) 128
BmrI ACTGGG 1 cut(s) 149
BmuI ACTGGG 1 cut(s) 149
BpuEI CTTGAG 1 cut(s) 137
BsaHI GRCGYC 1 cut(s) 124
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 109
Bse1I ACTGG 1 cut(s) 144
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 109
BseMII CTCAG 1 cut(s) 75
BseNI ACTGG 1 cut(s) 144
BseXI GCAGC 1 cut(s) 105
BseYI CCCAGC 1 cut(s) 206
BsgI GTGCAG 1 cut(s) 112
BslFI GGGAC 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 89
Bso31I GGTCTC 1 cut(s) 155
Bsp143I GATC 1 cut(s) 199
Bsp19I CCATGG 1 cut(s) 109
BspCNI CTCAG 1 cut(s) 76
BspLI GGNNCC 2 cut(s) 104, 105
BspTNI GGTCTC 1 cut(s) 155
BsrI ACTGG 1 cut(s) 144
BssECI CCNNGG 1 cut(s) 109
BssMI GATC 1 cut(s) 199
BssNI GRCGYC 1 cut(s) 124
BssT1I CCWWGG 1 cut(s) 109
Bst2UI CCWGG 1 cut(s) 128
BstACI GRCGYC 1 cut(s) 124
BstDEI CTNAG 1 cut(s) 84
BstDSI CCRYGG 1 cut(s) 109
BstH2I RGCGCY 1 cut(s) 256
BstHHI GCGC 1 cut(s) 255
BstKTI GATC 1 cut(s) 202
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 1 cut(s) 199
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 126
BstV1I GCAGC 1 cut(s) 105
BstXI CCANNNNNNTGG 1 cut(s) 116
BtgI CCRYGG 1 cut(s) 109
BtgZI GCGATG 1 cut(s) 151
BtsI GCAGTG 1 cut(s) 218
BtsIMutI CAGTG 1 cut(s) 218
CaiI CAGNNNCTG 1 cut(s) 99
CfoI GCGC 1 cut(s) 255
Cfr13I GGNCC 1 cut(s) 103
CseI GACGC 2 cut(s) 84, 132
CviAII CATG 4 cut(s) 56, 110, 203, 276
CviJI RGCY 3 cut(s) 96, 114, 131
CviKI_1 RGCY 3 cut(s) 96, 114, 131
DdeI CTNAG 1 cut(s) 84
DpnI GATC 1 cut(s) 201
DpnII GATC 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 109
Eco31I GGTCTC 1 cut(s) 155
Eco47I GGWCC 1 cut(s) 103
Eco47III AGCGCT 1 cut(s) 254
EcoO109I RGGNCCY 1 cut(s) 103
EcoRII CCWGG 1 cut(s) 126
EcoT14I CCWWGG 1 cut(s) 109
ErhI CCWWGG 1 cut(s) 109
FaeI CATG 4 cut(s) 59, 113, 206, 279
FaiI YATR 9 cut(s) 14, 46, 57, 111, 117, 137, 180, 204, 277
FaqI GGGAC 1 cut(s) 89
FatI CATG 4 cut(s) 55, 109, 202, 275
FblI GTMKAC 1 cut(s) 29
Fnu4HI GCNGC 1 cut(s) 94
Fsp4HI GCNGC 1 cut(s) 94
GlaI GCGC 1 cut(s) 254
GluI GCNGC 1 cut(s) 94
GsaI CCCAGC 1 cut(s) 210
HaeII RGCGCY 1 cut(s) 256
HgaI GACGC 2 cut(s) 84, 132
HhaI GCGC 1 cut(s) 255
Hin1I GRCGYC 1 cut(s) 124
Hin1II CATG 4 cut(s) 59, 113, 206, 279
Hin6I GCGC 1 cut(s) 253
HinP1I GCGC 1 cut(s) 253
Hpy166II GTNNAC 3 cut(s) 30, 69, 122
Hpy188I TCNGA 2 cut(s) 85, 272
Hpy8I GTNNAC 3 cut(s) 30, 69, 122
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 1 cut(s) 154
HpyCH4V TGCA 3 cut(s) 93, 188, 238
HpyF3I CTNAG 1 cut(s) 84
Hsp92I GRCGYC 1 cut(s) 124
Hsp92II CATG 4 cut(s) 59, 113, 206, 279
HspAI GCGC 1 cut(s) 253
KflI GGGWCCC 1 cut(s) 103
Kzo9I GATC 1 cut(s) 199
LpnPI CCDG 6 cut(s) 77, 85, 113, 125, 140, 192
Lsp1109I GCAGC 1 cut(s) 105
MalI GATC 1 cut(s) 201
MboI GATC 1 cut(s) 199
MluCI AATT 3 cut(s) 191, 217, 225
MnlI CCTC 5 cut(s) 44, 71, 79, 138, 278
MslI CAYNNNNRTG 1 cut(s) 114
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
NcoI CCATGG 1 cut(s) 109
NdeII GATC 1 cut(s) 199
NlaIII CATG 4 cut(s) 59, 113, 206, 279
NlaIV GGNNCC 2 cut(s) 104, 105
PkrI GCNGC 1 cut(s) 95
PpuMI RGGWCCY 1 cut(s) 103
Psp5II RGGWCCY 1 cut(s) 103
Psp6I CCWGG 1 cut(s) 126
PspFI CCCAGC 1 cut(s) 206
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 2 cut(s) 104, 105
PspPI GGNCC 1 cut(s) 103
PspPPI RGGWCCY 1 cut(s) 103
PstNI CAGNNNCTG 1 cut(s) 99
RseI CAYNNNNRTG 1 cut(s) 114
SatI GCNGC 1 cut(s) 94
Sau3AI GATC 1 cut(s) 199
Sau96I GGNCC 1 cut(s) 103
ScrFI CCNGG 1 cut(s) 128
SetI ASST 4 cut(s) 22, 98, 165, 270
SinI GGWCC 1 cut(s) 103
SmiMI CAYNNNNRTG 1 cut(s) 114
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 3 cut(s) 191, 217, 225
StyD4I CCNGG 1 cut(s) 126
StyI CCWWGG 1 cut(s) 109
TaqI TCGA 1 cut(s) 73
TasI AATT 3 cut(s) 191, 217, 225
TscAI CASTG 1 cut(s) 218
TseI GCWGC 1 cut(s) 93
TspRI CASTG 1 cut(s) 218
VpaK11BI GGWCC 1 cut(s) 103
XapI RAATTY 2 cut(s) 217, 225
XcmI CCANNNNNNNNNTGG 1 cut(s) 116
XmiI GTMKAC 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.