pycom05g04520

NADP-dependent D-sorbitol-6-phosphate dehydrogenase-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Reverse (-)
5306237 .. 5308311
2075 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 219 bp
ATGCTATTAAGCTTGGCTATCGCCATTTTGACTGTGCTGTACAAGACTGAAGCAGACGTTGGGGAAGCACTTGCAGAAGCATTTAAGACTGGACTTGTCAAGAGGGAAGAGCTTTTCATTACCACCAAGGTTTGGAATTCAGACCATGGGTATGTGGTTGAGGCCTGTAAAAACAGCCTCAAGAAACTTCGGCTAGATTATCTGATGATCTCTACCTAG

Protein Analysis

73

Amino Acids

8.08

Weight (kDa)

6.55

Isoelectric Point (pI)

21.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 19 - 68 8.6e-06 Aldo/keto reductase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 132
AcsI RAATTY 1 cut(s) 136
AcuI CTGAAG 1 cut(s) 69
AfaI GTAC 1 cut(s) 41
AfiI CCNNNNNNNGG 1 cut(s) 132
AjuI GAANNNNNNNTTGG 2 cut(s) 42, 74
AluBI AGCT 2 cut(s) 12, 112
AluI AGCT 2 cut(s) 12, 112
AoxI GGCC 1 cut(s) 162
ApoI RAATTY 1 cut(s) 136
BfaI CTAG 2 cut(s) 194, 217
BpuEI CTTGAG 1 cut(s) 164
BsaJI CCNNGG 2 cut(s) 126, 145
Bsc4I CCNNNNNNNGG 1 cut(s) 132
Bse1I ACTGG 1 cut(s) 94
BseDI CCNNGG 2 cut(s) 126, 145
BseLI CCNNNNNNNGG 1 cut(s) 132
BseNI ACTGG 1 cut(s) 94
BshFI GGCC 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 132
BsnI GGCC 1 cut(s) 164
Bsp1407I TGTACA 1 cut(s) 39
Bsp143I GATC 1 cut(s) 207
Bsp19I CCATGG 1 cut(s) 145
BspANI GGCC 1 cut(s) 164
BspQI GCTCTTC 1 cut(s) 102
BsrGI TGTACA 1 cut(s) 39
BsrI ACTGG 1 cut(s) 94
BssECI CCNNGG 2 cut(s) 126, 145
BssMI GATC 1 cut(s) 207
BssT1I CCWWGG 2 cut(s) 126, 145
Bst4CI ACNGT 1 cut(s) 34
Bst6I CTCTTC 1 cut(s) 102
BstAUI TGTACA 1 cut(s) 39
BstDSI CCRYGG 1 cut(s) 145
BstKTI GATC 1 cut(s) 210
BstMBI GATC 1 cut(s) 207
BsuRI GGCC 1 cut(s) 164
BtgI CCRYGG 1 cut(s) 145
Csp6I GTAC 1 cut(s) 40
CviAII CATG 1 cut(s) 146
CviJI RGCY 6 cut(s) 12, 17, 112, 164, 177, 193
CviKI_1 RGCY 6 cut(s) 12, 17, 112, 164, 177, 193
CviQI GTAC 1 cut(s) 40
DpnI GATC 1 cut(s) 209
DpnII GATC 1 cut(s) 207
Eam1104I CTCTTC 1 cut(s) 102
EarI CTCTTC 1 cut(s) 102
Eco130I CCWWGG 2 cut(s) 126, 145
Eco147I AGGCCT 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 69
EcoRI GAATTC 1 cut(s) 136
EcoT14I CCWWGG 2 cut(s) 126, 145
ErhI CCWWGG 2 cut(s) 126, 145
FaeI CATG 1 cut(s) 149
FaiI YATR 2 cut(s) 147, 153
FatI CATG 1 cut(s) 145
FspBI CTAG 2 cut(s) 194, 217
HaeIII GGCC 1 cut(s) 164
Hin1II CATG 1 cut(s) 149
HindIII AAGCTT 1 cut(s) 10
Hpy188I TCNGA 2 cut(s) 142, 204
Hpy188III TCNNGA 2 cut(s) 100, 181
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4IV ACGT 1 cut(s) 57
HpyCH4V TGCA 1 cut(s) 74
HpySE526I ACGT 1 cut(s) 57
Hsp92II CATG 1 cut(s) 149
Kzo9I GATC 1 cut(s) 207
LguI GCTCTTC 1 cut(s) 102
LpnPI CCDG 2 cut(s) 75, 178
MaeI CTAG 2 cut(s) 194, 217
MaeII ACGT 1 cut(s) 57
MalI GATC 1 cut(s) 209
MboI GATC 1 cut(s) 207
MboII GAAGA 1 cut(s) 119
MluCI AATT 1 cut(s) 136
MnlI CCTC 3 cut(s) 96, 154, 188
MseI TTAA 2 cut(s) 8, 84
MslI CAYNNNNRTG 1 cut(s) 150
NcoI CCATGG 1 cut(s) 145
NdeII GATC 1 cut(s) 207
NlaIII CATG 1 cut(s) 149
PceI AGGCCT 1 cut(s) 164
PciSI GCTCTTC 1 cut(s) 102
PflMI CCANNNNNTGG 1 cut(s) 132
RsaI GTAC 1 cut(s) 41
RsaNI GTAC 1 cut(s) 40
RseI CAYNNNNRTG 1 cut(s) 150
SapI GCTCTTC 1 cut(s) 102
SaqAI TTAA 2 cut(s) 8, 84
Sau3AI GATC 1 cut(s) 207
SetI ASST 5 cut(s) 14, 60, 114, 132, 218
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
Sse9I AATT 1 cut(s) 136
SseBI AGGCCT 1 cut(s) 164
SspMI CTAG 2 cut(s) 194, 217
StuI AGGCCT 1 cut(s) 164
StyI CCWWGG 2 cut(s) 126, 145
TaaI ACNGT 1 cut(s) 34
TaiI ACGT 1 cut(s) 60
TasI AATT 1 cut(s) 136
TatI WGTACW 1 cut(s) 39
Tru1I TTAA 2 cut(s) 8, 84
Tru9I TTAA 2 cut(s) 8, 84
TspDTI ATGAA 1 cut(s) 106
Van91I CCANNNNNTGG 1 cut(s) 132
XapI RAATTY 1 cut(s) 136
XspI CTAG 2 cut(s) 194, 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.