pycom05g05000

NAD(P)H-quinone oxidoreductase subunit 2

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
5908080 .. 5908527
448 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 306 bp
ATGTACTCCGAAATGTACACTTTCAGACTAAATAAGCATATCATTCACAATCCCTTCTGGGTGGTTGACGGCCGGGGGGACGAGTCAGCAAAGAAAGATGTACGGTCTAATGAGAATACTACGAGGTATTTACTTATGGATGAGGCAAGCTCTTCTATTCGGATTCATAGCTTCTCGGGACCATATAATGTTAATATAGGGTCATTTTCGCCCCTAGAAACGATGCAGACCCAAGAGGAGGCCCAAGTAACGCCCAAAGAGAGAAGTAGGTCAAGACTAAGTGTTAGGCATGTTGTGCTATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

102

Amino Acids

11.71

Weight (kDa)

7.94

Isoelectric Point (pI)

60.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 70
AfaI GTAC 3 cut(s) 5, 17, 102
AfiI CCNNNNNNNGG 1 cut(s) 238
AluBI AGCT 2 cut(s) 150, 171
AluI AGCT 2 cut(s) 150, 171
Ama87I CYCGRG 1 cut(s) 175
AoxI GGCC 2 cut(s) 70, 240
AspS9I GGNCC 2 cut(s) 179, 241
AsuC2I CCSGG 1 cut(s) 74
AvaI CYCGRG 1 cut(s) 175
AvaII GGWCC 1 cut(s) 179
BceAI ACGGC 1 cut(s) 85
BcnI CCSGG 1 cut(s) 74
BfaI CTAG 1 cut(s) 215
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 1 cut(s) 179
BmeT110I CYCGRG 1 cut(s) 175
BmgT120I GGNCC 2 cut(s) 179, 241
BmiI GGNNCC 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 74
BmsI GCATC 1 cut(s) 213
BplI GAGNNNNNCTC 2 cut(s) 134, 166
BpuMI CCSGG 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 73
Bsc4I CCNNNNNNNGG 1 cut(s) 238
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 1 cut(s) 145
BseLI CCNNNNNNNGG 1 cut(s) 238
BseRI GAGGAG 1 cut(s) 251
BseX3I CGGCCG 1 cut(s) 70
Bsh1285I CGRYCG 1 cut(s) 73
BshFI GGCC 2 cut(s) 72, 242
BsiEI CGRYCG 1 cut(s) 73
BsiHKCI CYCGRG 1 cut(s) 175
BsiSI CCGG 1 cut(s) 73
BslFI GGGAC 2 cut(s) 92, 192
BslI CCNNNNNNNGG 1 cut(s) 238
BsmFI GGGAC 2 cut(s) 92, 192
BsnI GGCC 2 cut(s) 72, 242
BsoBI CYCGRG 1 cut(s) 175
Bsp1407I TGTACA 1 cut(s) 15
BspANI GGCC 2 cut(s) 72, 242
BspLI GGNNCC 1 cut(s) 180
BspQI GCTCTTC 1 cut(s) 157
BsrGI TGTACA 1 cut(s) 15
BssECI CCNNGG 1 cut(s) 73
Bst4CI ACNGT 1 cut(s) 105
Bst6I CTCTTC 1 cut(s) 157
BstAPI GCANNNNNTGC 1 cut(s) 295
BstAUI TGTACA 1 cut(s) 15
BstC8I GCNNGC 1 cut(s) 148
BstDEI CTNAG 1 cut(s) 278
BstF5I GGATG 1 cut(s) 145
BstMCI CGRYCG 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 295
BstNSI RCATGY 1 cut(s) 293
BstSCI CCNGG 1 cut(s) 72
BstZI CGGCCG 1 cut(s) 70
BsuRI GGCC 2 cut(s) 72, 242
BtsCI GGATG 1 cut(s) 145
Cac8I GCNNGC 1 cut(s) 148
Cfr13I GGNCC 2 cut(s) 179, 241
Csp6I GTAC 3 cut(s) 4, 16, 101
CviAII CATG 1 cut(s) 290
CviJI RGCY 4 cut(s) 72, 150, 171, 242
CviKI_1 RGCY 4 cut(s) 72, 150, 171, 242
CviQI GTAC 3 cut(s) 4, 16, 101
DdeI CTNAG 1 cut(s) 278
EaeI YGGCCR 1 cut(s) 70
EagI CGGCCG 1 cut(s) 70
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
EclXI CGGCCG 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 179
Eco52I CGGCCG 1 cut(s) 70
Eco88I CYCGRG 1 cut(s) 175
FaeI CATG 1 cut(s) 293
FaiI YATR 8 cut(s) 39, 137, 168, 184, 186, 197, 291, 301
FaqI GGGAC 2 cut(s) 92, 192
FatI CATG 1 cut(s) 289
FokI GGATG 1 cut(s) 152
FspBI CTAG 1 cut(s) 215
HaeIII GGCC 2 cut(s) 72, 242
HapII CCGG 1 cut(s) 73
Hin1II CATG 1 cut(s) 293
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HinfI GANTC 2 cut(s) 83, 163
HpaII CCGG 1 cut(s) 73
Hpy166II GTNNAC 2 cut(s) 18, 67
Hpy188I TCNGA 3 cut(s) 10, 26, 162
Hpy188III TCNNGA 2 cut(s) 177, 273
Hpy8I GTNNAC 2 cut(s) 18, 67
HpyAV CCTTC 1 cut(s) 64
HpyCH4III ACNGT 1 cut(s) 105
HpyCH4V TGCA 1 cut(s) 226
HpyF10VI GCNNNNNNNGC 1 cut(s) 295
HpyF3I CTNAG 1 cut(s) 278
Hsp92II CATG 1 cut(s) 293
LguI GCTCTTC 1 cut(s) 157
LpnPI CCDG 2 cut(s) 43, 86
LweI GCATC 1 cut(s) 213
MaeI CTAG 1 cut(s) 215
MaeIII GTNAC 1 cut(s) 247
MboII GAAGA 1 cut(s) 144
MlyI GAGTC 1 cut(s) 92
MnlI CCTC 4 cut(s) 117, 136, 229, 232
MseI TTAA 1 cut(s) 192
MspI CCGG 1 cut(s) 73
MspR9I CCNGG 1 cut(s) 74
MwoI GCNNNNNNNGC 1 cut(s) 295
NciI CCSGG 1 cut(s) 74
NlaIII CATG 1 cut(s) 293
NlaIV GGNNCC 1 cut(s) 180
NspI RCATGY 1 cut(s) 293
PciSI GCTCTTC 1 cut(s) 157
PfeI GAWTC 1 cut(s) 163
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PspN4I GGNNCC 1 cut(s) 180
PspPI GGNCC 2 cut(s) 179, 241
RsaI GTAC 3 cut(s) 5, 17, 102
RsaNI GTAC 3 cut(s) 4, 16, 101
SapI GCTCTTC 1 cut(s) 157
SaqAI TTAA 1 cut(s) 192
Sau96I GGNCC 2 cut(s) 179, 241
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 74
SetI ASST 4 cut(s) 128, 152, 173, 272
SfaNI GCATC 1 cut(s) 213
SinI GGWCC 1 cut(s) 179
SspMI CTAG 1 cut(s) 215
StyD4I CCNGG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 105
TatI WGTACW 2 cut(s) 3, 15
TfiI GAWTC 1 cut(s) 163
Tru1I TTAA 1 cut(s) 192
Tru9I TTAA 1 cut(s) 192
TspDTI ATGAA 1 cut(s) 155
VpaK11BI GGWCC 1 cut(s) 179
XceI RCATGY 1 cut(s) 293
XspI CTAG 1 cut(s) 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.