Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

6839200 .. 6839946

Gene Structure 747 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGAGACACCCTGATGATAATTATGCAAAAACAAAGAGTGCTGATAATTATACATGTGATAGTCAGCTCTCTCTGTCTCTCTCTCTTTTCCCCAAAATGCCTATCTTCATCTTCTCCCTTGAGTTCCGATCGTCTCCTCCCCTTGCGCCTCCTTCCCTGCAAAATCAGAATTCCAAATCCACATCCAAAGACGACTCGCTCGGTACCAGTTCTGGTGGTGGCGGTGGATTCAATAGGCAGATTCCGAGAGCTCGACCGGCGCGATTACGAAGAAGTCGTCTGCGGATGTCTCCCATTTTGGCGTCTTCGCTGGGGTGGAATAGGATAAAGATGAGATCGGGGCCGTTGCCGCATGAGAGCCTCTTTGGGTTTAGTGGTGACAAAGGGTCAGCACTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018105 GO:0018193 GO:0018209 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

134

Amino Acids

14.53

Weight (kDa)

10.69

Isoelectric Point (pI)

76.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	203
AccB1I	GGYRCC	1 cut(s)	203
AccII	CGCG	1 cut(s)	262
AciI	CCGC	3 cut(s)	222, 283, 350
AcsI	RAATTY	1 cut(s)	169
AcyI	GRCGYC	1 cut(s)	302
AfaI	GTAC	1 cut(s)	205
AflIII	ACRYGT	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	232
AhdI	GACNNNNNGTC	1 cut(s)	385
AluBI	AGCT	2 cut(s)	67, 251
AluI	AGCT	2 cut(s)	67, 251
Alw21I	GWGCWC	1 cut(s)	253
Alw26I	GTCTC	3 cut(s)	81, 138, 294
AoxI	GGCC	1 cut(s)	341
ApoI	RAATTY	1 cut(s)	169
ArsI	GACNNNNNNTTYG	2 cut(s)	262, 294
Asp718I	GGTACC	1 cut(s)	203
AspLEI	GCGC	2 cut(s)	148, 262
AspS9I	GGNCC	1 cut(s)	341
AsuHPI	GGTGA	1 cut(s)	389
BanI	GGYRCC	1 cut(s)	203
BanII	GRGCYC	1 cut(s)	253
BbsI	GAAGAC	1 cut(s)	297
Bbv12I	GWGCWC	1 cut(s)	253
BceAI	ACGGC	1 cut(s)	328
BcoDI	GTCTC	3 cut(s)	81, 138, 294
BisI	GCNGC	1 cut(s)	350
BlsI	GCNGC	1 cut(s)	351
BmeRI	GACNNNNNGTC	1 cut(s)	385
BmgT120I	GGNCC	1 cut(s)	341
BmiI	GGNNCC	2 cut(s)	205, 342
BpiI	GAAGAC	1 cut(s)	297
BpuEI	CTTGAG	1 cut(s)	140
BsaHI	GRCGYC	1 cut(s)	302
Bse118I	RCCGGY	1 cut(s)	256
Bse1I	ACTGG	2 cut(s)	207, 399
BseGI	GGATG	2 cut(s)	182, 291
BseNI	ACTGG	2 cut(s)	207, 399
BseRI	GAGGAG	1 cut(s)	126
BseYI	CCCAGC	1 cut(s)	310
Bsh1236I	CGCG	1 cut(s)	262
Bsh1285I	CGRYCG	2 cut(s)	131, 257
BshFI	GGCC	1 cut(s)	343
BshNI	GGYRCC	1 cut(s)	203
BsiEI	CGRYCG	2 cut(s)	131, 257
BsiHKAI	GWGCWC	1 cut(s)	253
BsiSI	CCGG	1 cut(s)	257
BsmAI	GTCTC	3 cut(s)	81, 138, 294
BsmBI	CGTCTC	1 cut(s)	138
BsnI	GGCC	1 cut(s)	343
Bsp1286I	GDGCHC	1 cut(s)	253
Bsp143I	GATC	2 cut(s)	128, 335
BspACI	CCGC	3 cut(s)	222, 283, 350
BspANI	GGCC	1 cut(s)	343
BspFNI	CGCG	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	205, 342
BspT107I	GGYRCC	1 cut(s)	203
BsrFI	RCCGGY	1 cut(s)	256
BsrI	ACTGG	2 cut(s)	207, 399
BssAI	RCCGGY	1 cut(s)	256
BssMI	GATC	2 cut(s)	128, 335
BssNI	GRCGYC	1 cut(s)	302
BstACI	GRCGYC	1 cut(s)	302
BstF5I	GGATG	2 cut(s)	182, 291
BstFNI	CGCG	1 cut(s)	262
BstHHI	GCGC	2 cut(s)	148, 262
BstKTI	GATC	2 cut(s)	131, 338
BstMAI	GTCTC	3 cut(s)	81, 138, 294
BstMBI	GATC	2 cut(s)	128, 335
BstMCI	CGRYCG	2 cut(s)	131, 257
BstMWI	GCNNNNNNNGC	2 cut(s)	257, 349
BstNSI	RCATGY	1 cut(s)	57
BstUI	CGCG	1 cut(s)	262
BstV2I	GAAGAC	1 cut(s)	297
BsuRI	GGCC	1 cut(s)	343
BtsCI	GGATG	2 cut(s)	182, 291
BtsIMutI	CAGTG	1 cut(s)	392
CfoI	GCGC	2 cut(s)	148, 262
Cfr10I	RCCGGY	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	341
CseI	GACGC	1 cut(s)	291
Csp6I	GTAC	1 cut(s)	204
CviAII	CATG	2 cut(s)	54, 353
CviJI	RGCY	5 cut(s)	67, 251, 343, 360, 398
CviKI_1	RGCY	5 cut(s)	67, 251, 343, 360, 398
CviQI	GTAC	1 cut(s)	204
DpnI	GATC	2 cut(s)	130, 337
DpnII	GATC	2 cut(s)	128, 335
DriI	GACNNNNNGTC	1 cut(s)	385
Eam1105I	GACNNNNNGTC	1 cut(s)	385
Ecl136II	GAGCTC	1 cut(s)	251
Eco24I	GRGCYC	1 cut(s)	253
Eco53kI	GAGCTC	1 cut(s)	251
EcoICRI	GAGCTC	1 cut(s)	251
EcoRI	GAATTC	1 cut(s)	169
EcoT38I	GRGCYC	1 cut(s)	253
Esp3I	CGTCTC	1 cut(s)	138
FaeI	CATG	2 cut(s)	57, 356
FaiI	YATR	4 cut(s)	24, 51, 55, 354
FatI	CATG	2 cut(s)	53, 352
Fnu4HI	GCNGC	1 cut(s)	350
FokI	GGATG	2 cut(s)	169, 298
FriOI	GRGCYC	1 cut(s)	253
Fsp4HI	GCNGC	1 cut(s)	350
GlaI	GCGC	2 cut(s)	147, 261
GluI	GCNGC	1 cut(s)	350
GsaI	CCCAGC	1 cut(s)	314
HaeIII	GGCC	1 cut(s)	343
HapII	CCGG	1 cut(s)	257
HgaI	GACGC	1 cut(s)	291
HhaI	GCGC	2 cut(s)	148, 262
Hin1I	GRCGYC	1 cut(s)	302
Hin1II	CATG	2 cut(s)	57, 356
Hin6I	GCGC	2 cut(s)	146, 260
HinP1I	GCGC	2 cut(s)	146, 260
HinfI	GANTC	3 cut(s)	194, 228, 241
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	1 cut(s)	389
Hpy188I	TCNGA	3 cut(s)	128, 168, 246
HpyAV	CCTTC	1 cut(s)	162
HpyCH4V	TGCA	2 cut(s)	26, 160
HpyF10VI	GCNNNNNNNGC	2 cut(s)	257, 349
Hsp92I	GRCGYC	1 cut(s)	302
Hsp92II	CATG	2 cut(s)	57, 356
HspAI	GCGC	2 cut(s)	146, 260
KpnI	GGTACC	1 cut(s)	207
Kzo9I	GATC	2 cut(s)	128, 335
LpnPI	CCDG	7 cut(s)	24, 170, 198, 220, 270, 296, 380
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	2 cut(s)	130, 337
MboI	GATC	2 cut(s)	128, 335
MboII	GAAGA	4 cut(s)	97, 103, 282, 297
MhlI	GDGCHC	1 cut(s)	253
MluCI	AATT	3 cut(s)	19, 46, 169
MlyI	GAGTC	1 cut(s)	188
MnlI	CCTC	3 cut(s)	147, 159, 371
MslI	CAYNNNNRTG	1 cut(s)	12
MspI	CCGG	1 cut(s)	257
MvnI	CGCG	1 cut(s)	262
MwoI	GCNNNNNNNGC	2 cut(s)	257, 349
NdeII	GATC	2 cut(s)	128, 335
NlaIII	CATG	2 cut(s)	57, 356
NlaIV	GGNNCC	2 cut(s)	205, 342
NmuCI	GTSAC	1 cut(s)	377
NspI	RCATGY	1 cut(s)	57
PciI	ACATGT	1 cut(s)	53
PcsI	WCGNNNNNNNCGW	2 cut(s)	259, 274
PfeI	GAWTC	2 cut(s)	228, 241
PkrI	GCNGC	1 cut(s)	351
Ple19I	CGATCG	1 cut(s)	131
PleI	GAGTC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	188
PscI	ACATGT	1 cut(s)	53
Psp124BI	GAGCTC	1 cut(s)	253
PspFI	CCCAGC	1 cut(s)	310
PspN4I	GGNNCC	2 cut(s)	205, 342
PspPI	GGNCC	1 cut(s)	341
PvuI	CGATCG	1 cut(s)	131
RsaI	GTAC	1 cut(s)	205
RsaNI	GTAC	1 cut(s)	204
RseI	CAYNNNNRTG	1 cut(s)	12
SacI	GAGCTC	1 cut(s)	253
SatI	GCNGC	1 cut(s)	350
Sau3AI	GATC	2 cut(s)	128, 335
Sau96I	GGNCC	1 cut(s)	341
SchI	GAGTC	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	253
SetI	ASST	2 cut(s)	69, 253
SmiMI	CAYNNNNRTG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	119
SmoI	CTYRAG	1 cut(s)	119
Sse9I	AATT	3 cut(s)	19, 46, 169
SsiI	CCGC	3 cut(s)	222, 283, 350
SstI	GAGCTC	1 cut(s)	253
TaqI	TCGA	1 cut(s)	253
TasI	AATT	3 cut(s)	19, 46, 169
TauI	GCSGC	1 cut(s)	352
TfiI	GAWTC	2 cut(s)	228, 241
TscAI	CASTG	1 cut(s)	399
TseFI	GTSAC	1 cut(s)	377
Tsp45I	GTSAC	1 cut(s)	377
TspDTI	ATGAA	1 cut(s)	97
TspRI	CASTG	1 cut(s)	399
XapI	RAATTY	1 cut(s)	169
XceI	RCATGY	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.