pycom05g05730

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
7155274 .. 7155666
393 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 393 bp
ATGGCTGTTGTGGCCAGGTCCTGCCTAAATCCGAAGCCCTCAAGGCGTCCCCTAATGAGATATATTCTCAAGGCTTTGGAAAACCCTTTGAAGGTGGTGAGGGAAGATAGCTCCGGTTCTGCAAGGCTCAGAACAGCCTCTTCCAGAGGGTCTTGGAATGCTGCTGTGTTTGGTAGCTGGCGCAGCTCATCTGAGGTAGTGGTCATCCCAGGAGCCTCAACTATGAAAGGGGAAGGAGCAAGTGGCTTAAAACATTCAGGAACCAGTGGTTCGCAGGGAAGTGGTCCAACGAATGGTGGCGGGGAACATTCATCCTCACACAGACGGCATTCTAGGGATATATGTCCGGAACCATCTGGTGTACATGATGTAGAAAAACCTGACCACGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0009505 GO:0009506 GO:0016020 GO:0030054 GO:0030312 GO:0044464 GO:0055044 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase_Tyr

Protein Analysis

131

Amino Acids

13.73

Weight (kDa)

9.91

Isoelectric Point (pI)

52.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 293
AccIII TCCGGA 1 cut(s) 346
AciI CCGC 1 cut(s) 300
AcoI YGGCCR 1 cut(s) 12
AcyI GRCGYC 1 cut(s) 46
AfaI GTAC 1 cut(s) 363
AfiI CCNNNNNNNGG 2 cut(s) 91, 293
AgsI TTSAA 1 cut(s) 91
AjnI CCWGG 2 cut(s) 14, 208
AluBI AGCT 3 cut(s) 111, 177, 186
AluI AGCT 3 cut(s) 111, 177, 186
AlwNI CAGNNNCTG 1 cut(s) 21
Aor13HI TCCGGA 1 cut(s) 346
AoxI GGCC 1 cut(s) 12
ApeKI GCWGC 2 cut(s) 161, 183
AspLEI GCGC 1 cut(s) 183
AspS9I GGNCC 2 cut(s) 18, 284
AsuHPI GGTGA 1 cut(s) 109
AvaII GGWCC 2 cut(s) 18, 284
BalI TGGCCA 1 cut(s) 14
BbvI GCAGC 2 cut(s) 148, 195
BccI CCATC 1 cut(s) 361
BceAI ACGGC 1 cut(s) 341
BciT130I CCWGG 2 cut(s) 16, 210
BfaI CTAG 2 cut(s) 333, 391
BglI GCCNNNNNGGC 1 cut(s) 43
BisI GCNGC 2 cut(s) 162, 184
BlsI GCNGC 2 cut(s) 163, 185
Bme1390I CCNGG 2 cut(s) 16, 210
Bme18I GGWCC 2 cut(s) 18, 284
BmgT120I GGNCC 2 cut(s) 18, 284
BmiI GGNNCC 3 cut(s) 214, 262, 351
BmrFI CCNGG 2 cut(s) 16, 210
BpuEI CTTGAG 2 cut(s) 25, 53
BsaHI GRCGYC 1 cut(s) 46
BsaJI CCNNGG 1 cut(s) 208
BsaWI WCCGGW 2 cut(s) 113, 346
Bsc4I CCNNNNNNNGG 2 cut(s) 91, 293
Bse1I ACTGG 1 cut(s) 264
BseAI TCCGGA 1 cut(s) 346
BseBI CCWGG 2 cut(s) 16, 210
BseDI CCNNGG 1 cut(s) 208
BseGI GGATG 2 cut(s) 204, 311
BseLI CCNNNNNNNGG 2 cut(s) 91, 293
BseMII CTCAG 2 cut(s) 142, 183
BseNI ACTGG 1 cut(s) 264
BseXI GCAGC 2 cut(s) 148, 195
BshFI GGCC 1 cut(s) 14
BsiSI CCGG 2 cut(s) 114, 347
BslFI GGGAC 1 cut(s) 33
BslI CCNNNNNNNGG 2 cut(s) 91, 293
BsmFI GGGAC 1 cut(s) 33
BsmI GAATGC 2 cut(s) 163, 328
BsnI GGCC 1 cut(s) 14
Bsp13I TCCGGA 1 cut(s) 346
Bsp1407I TGTACA 1 cut(s) 361
BspACI CCGC 1 cut(s) 300
BspANI GGCC 1 cut(s) 14
BspCNI CTCAG 2 cut(s) 141, 184
BspEI TCCGGA 1 cut(s) 346
BspLI GGNNCC 3 cut(s) 214, 262, 351
BsrGI TGTACA 1 cut(s) 361
BsrI ACTGG 1 cut(s) 264
BssECI CCNNGG 1 cut(s) 208
BssNI GRCGYC 1 cut(s) 46
Bst2UI CCWGG 2 cut(s) 16, 210
Bst6I CTCTTC 1 cut(s) 145
BstACI GRCGYC 1 cut(s) 46
BstAUI TGTACA 1 cut(s) 361
BstC8I GCNNGC 1 cut(s) 179
BstDEI CTNAG 2 cut(s) 128, 192
BstF5I GGATG 2 cut(s) 204, 311
BstHHI GCGC 1 cut(s) 183
BstMWI GCNNNNNNNGC 3 cut(s) 11, 43, 183
BstNI CCWGG 2 cut(s) 16, 210
BstSCI CCNGG 2 cut(s) 14, 208
BstV1I GCAGC 2 cut(s) 148, 195
BsuRI GGCC 1 cut(s) 14
BtsCI GGATG 2 cut(s) 204, 311
BtsIMutI CAGTG 1 cut(s) 271
Cac8I GCNNGC 1 cut(s) 179
CaiI CAGNNNCTG 1 cut(s) 21
CfoI GCGC 1 cut(s) 183
Cfr13I GGNCC 2 cut(s) 18, 284
CseI GACGC 1 cut(s) 35
Csp6I GTAC 1 cut(s) 362
CviAII CATG 1 cut(s) 365
CviQI GTAC 1 cut(s) 362
DdeI CTNAG 2 cut(s) 128, 192
EaeI YGGCCR 1 cut(s) 12
Eam1104I CTCTTC 1 cut(s) 145
EarI CTCTTC 1 cut(s) 145
Eco47I GGWCC 2 cut(s) 18, 284
EcoO109I RGGNCCY 1 cut(s) 18
EcoRII CCWGG 2 cut(s) 14, 208
FaeI CATG 1 cut(s) 368
FaiI YATR 5 cut(s) 63, 224, 341, 343, 366
FaqI GGGAC 1 cut(s) 33
FatI CATG 1 cut(s) 364
FauI CCCGC 1 cut(s) 293
Fnu4HI GCNGC 2 cut(s) 162, 184
FokI GGATG 2 cut(s) 191, 298
Fsp4HI GCNGC 2 cut(s) 162, 184
FspBI CTAG 2 cut(s) 333, 391
GlaI GCGC 1 cut(s) 182
GluI GCNGC 2 cut(s) 162, 184
HaeIII GGCC 1 cut(s) 14
HapII CCGG 2 cut(s) 114, 347
HgaI GACGC 1 cut(s) 35
HhaI GCGC 1 cut(s) 183
Hin1I GRCGYC 1 cut(s) 46
Hin1II CATG 1 cut(s) 368
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
HpaII CCGG 2 cut(s) 114, 347
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 1 cut(s) 362
Hpy188I TCNGA 3 cut(s) 33, 131, 193
Hpy188III TCNNGA 3 cut(s) 144, 258, 347
Hpy8I GTNNAC 1 cut(s) 362
HpyAV CCTTC 2 cut(s) 85, 227
HpyCH4V TGCA 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 43, 183
HpyF3I CTNAG 2 cut(s) 128, 192
Hsp92I GRCGYC 1 cut(s) 46
Hsp92II CATG 1 cut(s) 368
HspAI GCGC 1 cut(s) 181
Kpn2I TCCGGA 1 cut(s) 346
LmnI GCTCC 3 cut(s) 116, 212, 236
Lsp1109I GCAGC 2 cut(s) 148, 195
MaeI CTAG 2 cut(s) 333, 391
MboII GAAGA 2 cut(s) 116, 132
MlsI TGGCCA 1 cut(s) 14
MluNI TGGCCA 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 311
MnlI CCTC 7 cut(s) 49, 93, 140, 148, 187, 226, 325
Mox20I TGGCCA 1 cut(s) 14
MroI TCCGGA 1 cut(s) 346
MscI TGGCCA 1 cut(s) 14
MseI TTAA 1 cut(s) 248
Msp20I TGGCCA 1 cut(s) 14
MspI CCGG 2 cut(s) 114, 347
MspR9I CCNGG 2 cut(s) 16, 210
Mva1269I GAATGC 2 cut(s) 163, 328
MvaI CCWGG 2 cut(s) 16, 210
MwoI GCNNNNNNNGC 3 cut(s) 11, 43, 183
NlaIII CATG 1 cut(s) 368
NlaIV GGNNCC 3 cut(s) 214, 262, 351
PctI GAATGC 2 cut(s) 163, 328
PflMI CCANNNNNTGG 1 cut(s) 293
PkrI GCNGC 2 cut(s) 163, 185
PpuMI RGGWCCY 1 cut(s) 18
Psp5II RGGWCCY 1 cut(s) 18
Psp6I CCWGG 2 cut(s) 14, 208
PspGI CCWGG 2 cut(s) 14, 208
PspN4I GGNNCC 3 cut(s) 214, 262, 351
PspPI GGNCC 2 cut(s) 18, 284
PspPPI RGGWCCY 1 cut(s) 18
PstNI CAGNNNCTG 1 cut(s) 21
RsaI GTAC 1 cut(s) 363
RsaNI GTAC 1 cut(s) 362
SaqAI TTAA 1 cut(s) 248
SatI GCNGC 2 cut(s) 162, 184
Sau96I GGNCC 2 cut(s) 18, 284
ScrFI CCNGG 2 cut(s) 16, 210
SetI ASST 7 cut(s) 20, 96, 113, 179, 188, 198, 382
SinI GGWCC 2 cut(s) 18, 284
SmlI CTYRAG 2 cut(s) 40, 68
SmoI CTYRAG 2 cut(s) 40, 68
SsiI CCGC 1 cut(s) 300
SspMI CTAG 2 cut(s) 333, 391
StyD4I CCNGG 2 cut(s) 14, 208
TatI WGTACW 1 cut(s) 361
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TscAI CASTG 1 cut(s) 271
TseI GCWGC 2 cut(s) 161, 183
TspDTI ATGAA 2 cut(s) 239, 300
TspRI CASTG 1 cut(s) 271
Van91I CCANNNNNTGG 1 cut(s) 293
VpaK11BI GGWCC 2 cut(s) 18, 284
XspI CTAG 2 cut(s) 333, 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.