pycom05g05840

Belongs to the glycosyl hydrolase 17 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
7333135 .. 7333961
827 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 495 bp
ATGGAGAATGCAAGAGCATATAATGGAAATTTGATTGCACATCTTAGATCCATGGTTGGGACTCCATTGATGCCTGGAAAATCTGTGGAGACGTATATCTTCGCGCTCTATGATGAGGATTTGAAACATGGTTCATCCTCTGACACAGTGGTGTGTGCCCAAATCCAGCTTTCTTCTGCTCAATTACAGGCAAATCTTGACTATGATTGCGGCCATGGTATTGATTGCAGTGCAATCCAACCAGGAGGCGCCTGTTTTGACCTAAACACTGTCGCATTGCACGCTGCCTATGCCATGAATCTGTATTATCATACTGGTGGCACAGTTCCTGTGAATTGTGATTTCTCACAAATAGCAATGCTCACATCCTCAAATCCCAGTAAGTCTTCTTTAACACGAACACATATTGAAATGGCCCATGTTTACCATGATGATGACACACTTTACACAAAATGGTACTTTCCAGAATTAATAATTCATAAAGTGACCAACTAA

Protein Analysis

165

Amino Acids

18.04

Weight (kDa)

5.42

Isoelectric Point (pI)

40.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 1 - 47 2.1e-09 Glycosyl hydrolases family 17
X8 PF07983 56 - 120 3.9e-15 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 248
AccII CGCG 1 cut(s) 104
AciI CCGC 1 cut(s) 210
AclWI GGATC 1 cut(s) 42
AcoI YGGCCR 1 cut(s) 211
AcsI RAATTY 1 cut(s) 28
AcyI GRCGYC 1 cut(s) 249
AfaI GTAC 1 cut(s) 458
AfiI CCNNNNNNNGG 1 cut(s) 57
AgsI TTSAA 2 cut(s) 124, 410
AjnI CCWGG 2 cut(s) 73, 241
AleI CACNNNNGTG 1 cut(s) 149
AluBI AGCT 1 cut(s) 169
AluI AGCT 1 cut(s) 169
Alw26I GTCTC 1 cut(s) 83
AlwI GGATC 1 cut(s) 42
AlwNI CAGNNNCTG 1 cut(s) 329
AoxI GGCC 2 cut(s) 211, 414
ApeKI GCWGC 1 cut(s) 284
ApoI RAATTY 1 cut(s) 28
AseI ATTAAT 1 cut(s) 470
AspLEI GCGC 2 cut(s) 106, 251
AspS9I GGNCC 1 cut(s) 415
BaeGI GKGCMC 1 cut(s) 160
BanI GGYRCC 1 cut(s) 248
BbsI GAAGAC 1 cut(s) 378
BbvI GCAGC 1 cut(s) 271
BciT130I CCWGG 2 cut(s) 75, 243
BcoDI GTCTC 1 cut(s) 83
BfoI RGCGCY 1 cut(s) 252
BisI GCNGC 2 cut(s) 211, 285
BlsI GCNGC 2 cut(s) 212, 286
Bme1390I CCNGG 2 cut(s) 75, 243
BmgT120I GGNCC 1 cut(s) 415
BmiI GGNNCC 1 cut(s) 250
BmrFI CCNGG 2 cut(s) 75, 243
BmrI ACTGGG 1 cut(s) 372
BmsI GCATC 1 cut(s) 60
BmuI ACTGGG 1 cut(s) 372
BpiI GAAGAC 1 cut(s) 378
BsaHI GRCGYC 1 cut(s) 249
BsaJI CCNNGG 2 cut(s) 51, 214
Bsc4I CCNNNNNNNGG 1 cut(s) 57
Bse1I ACTGG 2 cut(s) 319, 378
Bse3DI GCAATG 2 cut(s) 275, 363
BseBI CCWGG 2 cut(s) 75, 243
BseDI CCNNGG 2 cut(s) 51, 214
BseGI GGATG 2 cut(s) 134, 365
BseLI CCNNNNNNNGG 1 cut(s) 57
BseMI GCAATG 2 cut(s) 275, 363
BseNI ACTGG 2 cut(s) 319, 378
BseSI GKGCMC 1 cut(s) 160
BseXI GCAGC 1 cut(s) 271
Bsh1236I CGCG 1 cut(s) 104
BshFI GGCC 2 cut(s) 213, 416
BshNI GGYRCC 1 cut(s) 248
BslFI GGGAC 1 cut(s) 73
BslI CCNNNNNNNGG 1 cut(s) 57
BsmAI GTCTC 1 cut(s) 83
BsmBI CGTCTC 1 cut(s) 83
BsmFI GGGAC 1 cut(s) 73
BsmI GAATGC 1 cut(s) 13
BsnI GGCC 2 cut(s) 213, 416
Bsp1286I GDGCHC 1 cut(s) 160
Bsp143I GATC 1 cut(s) 47
Bsp19I CCATGG 2 cut(s) 51, 214
BspACI CCGC 1 cut(s) 210
BspANI GGCC 2 cut(s) 213, 416
BspFNI CGCG 1 cut(s) 104
BspLI GGNNCC 1 cut(s) 250
BspPI GGATC 1 cut(s) 42
BspT107I GGYRCC 1 cut(s) 248
BsrDI GCAATG 2 cut(s) 275, 363
BsrI ACTGG 2 cut(s) 319, 378
BssECI CCNNGG 2 cut(s) 51, 214
BssMI GATC 1 cut(s) 47
BssNI GRCGYC 1 cut(s) 249
BssT1I CCWWGG 2 cut(s) 51, 214
Bst2UI CCWGG 2 cut(s) 75, 243
Bst4CI ACNGT 3 cut(s) 148, 271, 325
BstACI GRCGYC 1 cut(s) 249
BstC8I GCNNGC 1 cut(s) 282
BstDEI CTNAG 1 cut(s) 44
BstDSI CCRYGG 2 cut(s) 51, 214
BstF5I GGATG 2 cut(s) 134, 365
BstFNI CGCG 1 cut(s) 104
BstH2I RGCGCY 1 cut(s) 252
BstHHI GCGC 2 cut(s) 106, 251
BstKTI GATC 1 cut(s) 50
BstMAI GTCTC 1 cut(s) 83
BstMBI GATC 1 cut(s) 47
BstMWI GCNNNNNNNGC 2 cut(s) 281, 290
BstNI CCWGG 2 cut(s) 75, 243
BstSCI CCNGG 2 cut(s) 73, 241
BstSLI GKGCMC 1 cut(s) 160
BstUI CGCG 1 cut(s) 104
BstV1I GCAGC 1 cut(s) 271
BstV2I GAAGAC 1 cut(s) 378
BstX2I RGATCY 1 cut(s) 47
BstYI RGATCY 1 cut(s) 47
BsuRI GGCC 2 cut(s) 213, 416
BtgI CCRYGG 2 cut(s) 51, 214
BtsCI GGATG 2 cut(s) 134, 365
BtsI GCAGTG 1 cut(s) 235
BtsIMutI CAGTG 3 cut(s) 153, 235, 267
Cac8I GCNNGC 1 cut(s) 282
CaiI CAGNNNCTG 1 cut(s) 329
CfoI GCGC 2 cut(s) 106, 251
Cfr13I GGNCC 1 cut(s) 415
Csp6I GTAC 1 cut(s) 457
CviAII CATG 6 cut(s) 52, 128, 215, 295, 419, 428
CviJI RGCY 3 cut(s) 169, 213, 416
CviKI_1 RGCY 3 cut(s) 169, 213, 416
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 1 cut(s) 44
DinI GGCGCC 1 cut(s) 250
DpnI GATC 1 cut(s) 49
DpnII GATC 1 cut(s) 47
EaeI YGGCCR 1 cut(s) 211
Eco130I CCWWGG 2 cut(s) 51, 214
EcoRII CCWGG 2 cut(s) 73, 241
EcoT14I CCWWGG 2 cut(s) 51, 214
EgeI GGCGCC 1 cut(s) 250
EheI GGCGCC 1 cut(s) 250
ErhI CCWWGG 2 cut(s) 51, 214
Esp3I CGTCTC 1 cut(s) 83
FaeI CATG 6 cut(s) 55, 131, 218, 298, 422, 431
FaqI GGGAC 1 cut(s) 73
FatI CATG 6 cut(s) 51, 127, 214, 294, 418, 427
Fnu4HI GCNGC 2 cut(s) 211, 285
FokI GGATG 2 cut(s) 121, 352
Fsp4HI GCNGC 2 cut(s) 211, 285
GlaI GCGC 2 cut(s) 105, 250
GluI GCNGC 2 cut(s) 211, 285
HaeII RGCGCY 1 cut(s) 252
HaeIII GGCC 2 cut(s) 213, 416
HhaI GCGC 2 cut(s) 106, 251
Hin1I GRCGYC 1 cut(s) 249
Hin1II CATG 6 cut(s) 55, 131, 218, 298, 422, 431
Hin6I GCGC 2 cut(s) 104, 249
HinP1I GCGC 2 cut(s) 104, 249
HinfI GANTC 2 cut(s) 61, 298
Hpy166II GTNNAC 1 cut(s) 424
Hpy188I TCNGA 1 cut(s) 142
Hpy188III TCNNGA 2 cut(s) 197, 464
Hpy8I GTNNAC 1 cut(s) 424
HpyCH4III ACNGT 3 cut(s) 148, 271, 325
HpyCH4IV ACGT 1 cut(s) 92
HpyCH4V TGCA 5 cut(s) 11, 38, 228, 233, 280
HpyF10VI GCNNNNNNNGC 2 cut(s) 281, 290
HpyF3I CTNAG 1 cut(s) 44
HpySE526I ACGT 1 cut(s) 92
Hsp92I GRCGYC 1 cut(s) 249
Hsp92II CATG 6 cut(s) 55, 131, 218, 298, 422, 431
HspAI GCGC 2 cut(s) 104, 249
KasI GGCGCC 1 cut(s) 248
Kzo9I GATC 1 cut(s) 47
Lsp1109I GCAGC 1 cut(s) 271
LweI GCATC 1 cut(s) 60
MaeII ACGT 1 cut(s) 92
MaeIII GTNAC 1 cut(s) 484
MalI GATC 1 cut(s) 49
MboI GATC 1 cut(s) 47
MboII GAAGA 3 cut(s) 91, 165, 378
MflI RGATCY 1 cut(s) 47
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 5 cut(s) 28, 182, 334, 467, 474
Mly113I GGCGCC 1 cut(s) 249
MlyI GAGTC 1 cut(s) 55
MmeI TCCRAC 1 cut(s) 262
MnlI CCTC 4 cut(s) 109, 148, 239, 379
MseI TTAA 2 cut(s) 392, 470
MslI CAYNNNNRTG 3 cut(s) 149, 315, 432
MspR9I CCNGG 2 cut(s) 75, 243
Mva1269I GAATGC 1 cut(s) 13
MvaI CCWGG 2 cut(s) 75, 243
MvnI CGCG 1 cut(s) 104
MwoI GCNNNNNNNGC 2 cut(s) 281, 290
NarI GGCGCC 1 cut(s) 249
NcoI CCATGG 2 cut(s) 51, 214
NdeII GATC 1 cut(s) 47
NlaIII CATG 6 cut(s) 55, 131, 218, 298, 422, 431
NlaIV GGNNCC 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 484
OliI CACNNNNGTG 1 cut(s) 149
PctI GAATGC 1 cut(s) 13
PfeI GAWTC 1 cut(s) 298
PkrI GCNGC 2 cut(s) 212, 286
PleI GAGTC 1 cut(s) 55
PluTI GGCGCC 1 cut(s) 252
PpsI GAGTC 1 cut(s) 55
PshBI ATTAAT 1 cut(s) 470
Psp6I CCWGG 2 cut(s) 73, 241
PspGI CCWGG 2 cut(s) 73, 241
PspN4I GGNNCC 1 cut(s) 250
PspPI GGNCC 1 cut(s) 415
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 1 cut(s) 47
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
RseI CAYNNNNRTG 3 cut(s) 149, 315, 432
SaqAI TTAA 2 cut(s) 392, 470
SatI GCNGC 2 cut(s) 211, 285
Sau3AI GATC 1 cut(s) 47
Sau96I GGNCC 1 cut(s) 415
SchI GAGTC 1 cut(s) 55
ScrFI CCNGG 2 cut(s) 75, 243
SduI GDGCHC 1 cut(s) 160
SetI ASST 3 cut(s) 95, 171, 264
SfaNI GCATC 1 cut(s) 60
SfoI GGCGCC 1 cut(s) 250
SmiMI CAYNNNNRTG 3 cut(s) 149, 315, 432
Sse9I AATT 5 cut(s) 28, 182, 334, 467, 474
SsiI CCGC 1 cut(s) 210
SspDI GGCGCC 1 cut(s) 248
StyD4I CCNGG 2 cut(s) 73, 241
StyI CCWWGG 2 cut(s) 51, 214
TaaI ACNGT 3 cut(s) 148, 271, 325
TaiI ACGT 1 cut(s) 95
TasI AATT 5 cut(s) 28, 182, 334, 467, 474
TauI GCSGC 1 cut(s) 213
TfiI GAWTC 1 cut(s) 298
Tru1I TTAA 2 cut(s) 392, 470
Tru9I TTAA 2 cut(s) 392, 470
TscAI CASTG 3 cut(s) 153, 235, 274
TseFI GTSAC 1 cut(s) 484
TseI GCWGC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 484
TspDTI ATGAA 3 cut(s) 123, 311, 467
TspRI CASTG 3 cut(s) 153, 235, 274
VspI ATTAAT 1 cut(s) 470
XapI RAATTY 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.