Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

7570950 .. 7575104

Gene Structure 4155 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGAGGCTGACAGGCTTGAAGTTTGGTCGCAACCAACTAATACAAAGGAGAGTGCCTCTTCACGGCAAAAAATTAGTTCGGATAAATGGGTTGAGCATGCTAGGACTGCTTTTTCTGATAGATCCTCGAATTGCATTATCCTTGGCCTCAAGGTTCCCAACAAACACATTTTTGAAGGCTGAAGTTACCCAGTTGGTTCAGTCACATATCTTGGATATCCGCTCCATTCCTGAAGCATTGCCGTATTTTGTAACCCCAAAAGCAGTTGATGAAAATTCGGCACTTTTGCAACAATTGCCACATTGGGCTGCTTGCTCAATTACACAAGCTCTTGAGTTCCTTATTCCTGCATATAAGGGCCATCCTCGTGTCATGGCATACGTTCTTAGGGTGCTGGAGTCTTATCCTCCAGACCGAGTAACTTTCTTCATGCCACAGCTAGTGCAGGCTCTGCGATATGATGATGAGAGGCTAGTAGAAGGCTATCTGCTTAGAGCAGCTCAAAGAAGTGATATCTTTGCCCATATTTTAATCTGGCACTTACAGGGTGAGACATCTGTTCCAGAATCAGAAAGAAAAGATGACGTCCCTGTTAAGAATAGTTCGTTTCAAGAGTTGTTGCCTATTGTTAGACAGCATATCGTTGATGGTTTCAGTCCCAAGGCACTTGATATTTTTCAAAGAGAATTTGATTTCTTTGACAAGGTTACATCTATTTCCGGTGTACTCTTTCCGCTTCCAAAGGAAGAACGCCGAGCTGGTATCCGGAGAGAGTTGGAGAAAATTGAAGTTGAGGGAGAGGATCTCTATTTGCCAACTGCTCCTACCAAGCTTGTAAGGGGAATTCAGGTAGATAGTGGAATACCCTTGCAATCTGCAGCAAAAGTTCCTATAATGATAACATTTAATGATGATCGATCGGGTTGGGGACCGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0003824 GO:0004430 GO:0005488 GO:0005515 GO:0005543 GO:0005546 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006629 GO:0006644 GO:0006650 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007010 GO:0007154 GO:0007165 GO:0008092 GO:0008150 GO:0008152 GO:0008289 GO:0009506 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019637 GO:0023052 GO:0030029 GO:0030036 GO:0030054 GO:0030258 GO:0035091 GO:0035556 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044255 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044877 GO:0046486 GO:0046488 GO:0046834 GO:0046854 GO:0048015 GO:0048017 GO:0048471 GO:0050789 GO:0050794 GO:0050896 GO:0051015 GO:0051716 GO:0052742 GO:0055044 GO:0065007 GO:0070273 GO:0070300 GO:0071704 GO:0071840 GO:0071944 GO:1901564 GO:1901981 GO:1902936

KEGG Pathways

Metabolic & Signaling

ko00562 ko01100 ko04011 ko04070 map00562 map01100 map04011 map04070

Pfam Domains

Protein Families

PI3Ka PI3_PI4_kinase

Protein Analysis

313

Amino Acids

35.49

Weight (kDa)

8.58

Isoelectric Point (pI)

48.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PI3Ka	PF00613	64 - 191	2.8e-24	Phosphoinositide 3-kinase family, accessory domain (PIK domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	588
AccBSI	CCGCTC	1 cut(s)	222
AccIII	TCCGGA	1 cut(s)	765
AciI	CCGC	3 cut(s)	220, 734, 932
AclWI	GGATC	2 cut(s)	116, 810
AcsI	RAATTY	3 cut(s)	274, 686, 843
AcuI	CTGAAG	2 cut(s)	201, 252
AcyI	GRCGYC	1 cut(s)	585
AfaI	GTAC	1 cut(s)	726
AfiI	CCNNNNNNNGG	1 cut(s)	62
AgsI	TTSAA	5 cut(s)	19, 175, 611, 680, 788
AluBI	AGCT	5 cut(s)	329, 439, 500, 758, 832
AluI	AGCT	5 cut(s)	329, 439, 500, 758, 832
Alw26I	GTCTC	1 cut(s)	545
AlwI	GGATC	2 cut(s)	116, 810
AlwNI	CAGNNNCTG	1 cut(s)	451
Aor13HI	TCCGGA	1 cut(s)	765
AoxI	GGCC	2 cut(s)	144, 358
ApeKI	GCWGC	3 cut(s)	308, 497, 878
ApoI	RAATTY	3 cut(s)	274, 686, 843
AspS9I	GGNCC	2 cut(s)	358, 929
AsuHPI	GGTGA	1 cut(s)	560
AvaII	GGWCC	1 cut(s)	929
BauI	CACGAG	1 cut(s)	366
BbvI	GCAGC	3 cut(s)	295, 509, 890
BccI	CCATC	2 cut(s)	369, 641
BceAI	ACGGC	2 cut(s)	79, 226
BciVI	GTATCC	1 cut(s)	773
BcoDI	GTCTC	1 cut(s)	545
BfaI	CTAG	3 cut(s)	101, 440, 473
BfmI	CTRYAG	1 cut(s)	876
BfuI	GTATCC	1 cut(s)	773
BisI	GCNGC	3 cut(s)	309, 498, 879
BlsI	GCNGC	3 cut(s)	310, 499, 880
Bme18I	GGWCC	1 cut(s)	929
BmgT120I	GGNCC	2 cut(s)	358, 929
BmiI	GGNNCC	2 cut(s)	155, 930
BmrI	ACTGGG	1 cut(s)	184
BmuI	ACTGGG	1 cut(s)	184
BplI	GAGNNNNNCTC	4 cut(s)	40, 72, 789, 821
BpmI	CTGGAG	2 cut(s)	393, 416
BpuEI	CTTGAG	2 cut(s)	133, 353
Bsa29I	ATCGAT	1 cut(s)	916
BsaHI	GRCGYC	1 cut(s)	585
BsaJI	CCNNGG	2 cut(s)	141, 660
BsaWI	WCCGGW	2 cut(s)	719, 765
Bsc4I	CCNNNNNNNGG	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	190
Bse3DI	GCAATG	1 cut(s)	236
BseAI	TCCGGA	1 cut(s)	765
BseCI	ATCGAT	1 cut(s)	916
BseDI	CCNNGG	2 cut(s)	141, 660
BseGI	GGATG	1 cut(s)	361
BseLI	CCNNNNNNNGG	1 cut(s)	62
BseMI	GCAATG	1 cut(s)	236
BseNI	ACTGG	1 cut(s)	190
BseXI	GCAGC	3 cut(s)	295, 509, 890
BsgI	GTGCAG	1 cut(s)	464
Bsh1285I	CGRYCG	1 cut(s)	920
BshFI	GGCC	2 cut(s)	146, 360
BshVI	ATCGAT	1 cut(s)	916
BsiEI	CGRYCG	1 cut(s)	920
BsiSI	CCGG	2 cut(s)	720, 766
BslFI	GGGAC	2 cut(s)	572, 642
BslI	CCNNNNNNNGG	1 cut(s)	62
BsmAI	GTCTC	1 cut(s)	545
BsmFI	GGGAC	2 cut(s)	572, 642
BsnI	GGCC	2 cut(s)	146, 360
Bsp13I	TCCGGA	1 cut(s)	765
Bsp143I	GATC	4 cut(s)	121, 802, 913, 917
BspACI	CCGC	3 cut(s)	220, 734, 932
BspANI	GGCC	2 cut(s)	146, 360
BspDI	ATCGAT	1 cut(s)	916
BspEI	TCCGGA	1 cut(s)	765
BspLI	GGNNCC	2 cut(s)	155, 930
BspMAI	CTGCAG	1 cut(s)	880
BspPI	GGATC	2 cut(s)	116, 810
BsrBI	CCGCTC	1 cut(s)	222
BsrDI	GCAATG	1 cut(s)	236
BsrI	ACTGG	1 cut(s)	190
BssECI	CCNNGG	2 cut(s)	141, 660
BssMI	GATC	4 cut(s)	121, 802, 913, 917
BssNI	GRCGYC	1 cut(s)	585
BssSI	CACGAG	1 cut(s)	366
BssT1I	CCWWGG	2 cut(s)	141, 660
Bst2BI	CACGAG	1 cut(s)	366
Bst6I	CTCTTC	1 cut(s)	63
BstACI	GRCGYC	1 cut(s)	585
BstAPI	GCANNNNNTGC	2 cut(s)	295, 451
BstC8I	GCNNGC	3 cut(s)	98, 313, 447
BstDEI	CTNAG	2 cut(s)	386, 491
BstF5I	GGATG	1 cut(s)	361
BstKTI	GATC	4 cut(s)	124, 805, 916, 920
BstMAI	GTCTC	1 cut(s)	545
BstMBI	GATC	4 cut(s)	121, 802, 913, 917
BstMCI	CGRYCG	1 cut(s)	920
BstMWI	GCNNNNNNNGC	3 cut(s)	106, 295, 451
BstNSI	RCATGY	1 cut(s)	100
BstSFI	CTRYAG	1 cut(s)	876
BstV1I	GCAGC	3 cut(s)	295, 509, 890
BstX2I	RGATCY	2 cut(s)	121, 802
BstYI	RGATCY	2 cut(s)	121, 802
Bsu15I	ATCGAT	1 cut(s)	916
BsuI	GTATCC	1 cut(s)	773
BsuRI	GGCC	2 cut(s)	146, 360
BsuTUI	ATCGAT	1 cut(s)	916
BtsCI	GGATG	1 cut(s)	361
Cac8I	GCNNGC	3 cut(s)	98, 313, 447
CaiI	CAGNNNCTG	1 cut(s)	451
Cfr13I	GGNCC	2 cut(s)	358, 929
ClaI	ATCGAT	1 cut(s)	916
Csp6I	GTAC	1 cut(s)	725
CviAII	CATG	3 cut(s)	97, 373, 430
CviQI	GTAC	1 cut(s)	725
DdeI	CTNAG	2 cut(s)	386, 491
DpnI	GATC	4 cut(s)	123, 804, 915, 919
DpnII	GATC	4 cut(s)	121, 802, 913, 917
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco130I	CCWWGG	2 cut(s)	141, 660
Eco32I	GATATC	2 cut(s)	217, 514
Eco47I	GGWCC	1 cut(s)	929
Eco57I	CTGAAG	2 cut(s)	201, 252
EcoRI	GAATTC	1 cut(s)	843
EcoRV	GATATC	2 cut(s)	217, 514
EcoT14I	CCWWGG	2 cut(s)	141, 660
ErhI	CCWWGG	2 cut(s)	141, 660
FaeI	CATG	3 cut(s)	100, 376, 433
FaqI	GGGAC	2 cut(s)	572, 642
FatI	CATG	3 cut(s)	96, 372, 429
Fnu4HI	GCNGC	3 cut(s)	309, 498, 879
FokI	GGATG	1 cut(s)	348
Fsp4HI	GCNGC	3 cut(s)	309, 498, 879
FspBI	CTAG	3 cut(s)	101, 440, 473
GluI	GCNGC	3 cut(s)	309, 498, 879
GsuI	CTGGAG	2 cut(s)	393, 416
HaeIII	GGCC	2 cut(s)	146, 360
HapII	CCGG	2 cut(s)	720, 766
Hin1I	GRCGYC	1 cut(s)	585
Hin1II	CATG	3 cut(s)	100, 376, 433
HindIII	AAGCTT	1 cut(s)	830
HinfI	GANTC	2 cut(s)	398, 566
HpaII	CCGG	2 cut(s)	720, 766
HphI	GGTGA	1 cut(s)	560
Hpy166II	GTNNAC	1 cut(s)	725
Hpy188I	TCNGA	3 cut(s)	81, 117, 571
Hpy188III	TCNNGA	6 cut(s)	230, 332, 410, 563, 611, 766
Hpy8I	GTNNAC	1 cut(s)	725
HpyAV	CCTTC	2 cut(s)	169, 473
HpyCH4IV	ACGT	2 cut(s)	381, 585
HpyCH4V	TGCA	6 cut(s)	134, 289, 350, 445, 871, 878
HpyF10VI	GCNNNNNNNGC	3 cut(s)	106, 295, 451
HpyF3I	CTNAG	2 cut(s)	386, 491
HpySE526I	ACGT	2 cut(s)	381, 585
Hsp92I	GRCGYC	1 cut(s)	585
Hsp92II	CATG	3 cut(s)	100, 376, 433
Kpn2I	TCCGGA	1 cut(s)	765
Kzo9I	GATC	4 cut(s)	121, 802, 913, 917
LmnI	GCTCC	2 cut(s)	227, 826
Lsp1109I	GCAGC	3 cut(s)	295, 509, 890
MaeI	CTAG	3 cut(s)	101, 440, 473
MaeII	ACGT	2 cut(s)	381, 585
MaeIII	GTNAC	5 cut(s)	184, 201, 250, 418, 706
MalI	GATC	4 cut(s)	123, 804, 915, 919
MbiI	CCGCTC	1 cut(s)	222
MboI	GATC	4 cut(s)	121, 802, 913, 917
MboII	GAAGA	3 cut(s)	50, 418, 758
MfeI	CAATTG	1 cut(s)	293
MflI	RGATCY	2 cut(s)	121, 802
MluCI	AATT	8 cut(s)	71, 129, 274, 293, 318, 686, 783, 843
MlyI	GAGTC	1 cut(s)	407
MmeI	TCCRAC	1 cut(s)	756
MnlI	CCTC	8 cut(s)	66, 135, 157, 375, 417, 462, 787, 793
MroI	TCCGGA	1 cut(s)	765
MseI	TTAA	3 cut(s)	530, 594, 906
MslI	CAYNNNNRTG	1 cut(s)	366
MspI	CCGG	2 cut(s)	720, 766
MunI	CAATTG	1 cut(s)	293
MwoI	GCNNNNNNNGC	3 cut(s)	106, 295, 451
NdeII	GATC	4 cut(s)	121, 802, 913, 917
NlaIII	CATG	3 cut(s)	100, 376, 433
NlaIV	GGNNCC	2 cut(s)	155, 930
NmeAIII	GCCGAG	1 cut(s)	779
NmuCI	GTSAC	1 cut(s)	201
NspI	RCATGY	1 cut(s)	100
PaeI	GCATGC	1 cut(s)	100
PfeI	GAWTC	1 cut(s)	566
PkrI	GCNGC	3 cut(s)	310, 499, 880
Ple19I	CGATCG	1 cut(s)	920
PleI	GAGTC	1 cut(s)	406
PpsI	GAGTC	1 cut(s)	406
PspN4I	GGNNCC	2 cut(s)	155, 930
PspPI	GGNCC	2 cut(s)	358, 929
PstI	CTGCAG	1 cut(s)	880
PstNI	CAGNNNCTG	1 cut(s)	451
PsuI	RGATCY	2 cut(s)	121, 802
PvuI	CGATCG	1 cut(s)	920
RsaI	GTAC	1 cut(s)	726
RsaNI	GTAC	1 cut(s)	725
RseI	CAYNNNNRTG	1 cut(s)	366
SaqAI	TTAA	3 cut(s)	530, 594, 906
SatI	GCNGC	3 cut(s)	309, 498, 879
Sau3AI	GATC	4 cut(s)	121, 802, 913, 917
Sau96I	GGNCC	2 cut(s)	358, 929
SchI	GAGTC	1 cut(s)	407
SfcI	CTRYAG	1 cut(s)	876
SinI	GGWCC	1 cut(s)	929
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	2 cut(s)	148, 332
SmoI	CTYRAG	2 cut(s)	148, 332
SphI	GCATGC	1 cut(s)	100
Sse9I	AATT	8 cut(s)	71, 129, 274, 293, 318, 686, 783, 843
SsiI	CCGC	3 cut(s)	220, 734, 932
SspMI	CTAG	3 cut(s)	101, 440, 473
StyI	CCWWGG	2 cut(s)	141, 660
TaiI	ACGT	2 cut(s)	384, 588
TaqI	TCGA	2 cut(s)	127, 916
TaqII	GACCGA	1 cut(s)	429
TasI	AATT	8 cut(s)	71, 129, 274, 293, 318, 686, 783, 843
TatI	WGTACW	1 cut(s)	724
TfiI	GAWTC	1 cut(s)	566
Tru1I	TTAA	3 cut(s)	530, 594, 906
Tru9I	TTAA	3 cut(s)	530, 594, 906
TseFI	GTSAC	1 cut(s)	201
TseI	GCWGC	3 cut(s)	308, 497, 878
Tsp45I	GTSAC	1 cut(s)	201
TspDTI	ATGAA	2 cut(s)	285, 418
VpaK11BI	GGWCC	1 cut(s)	929
XapI	RAATTY	3 cut(s)	274, 686, 843
XceI	RCATGY	1 cut(s)	100
XspI	CTAG	3 cut(s)	101, 440, 473
ZraI	GACGTC	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.