Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

7623890 .. 7624994

Gene Structure 1105 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGAAGGTGTTTGTTAATATTGGCATATTACTGGGGTACGTATCCAACTATGCCTTCTCCAAGCTCCCCATTCACTTGAACTGGAGGGTCATGCTCGGCGTCGGCGCGTTTCCATCTGTTGTTCTTGCCATCGGTGTCTTAGCCATGCCCGAGTCGCCTCGTTGGCTCGTCATGCAAGGGCGACTTGGAGACGCCAAGCGAGTTCTACAAAAGACATCAGAATCCATAGAAGAGTGTCAGCTCAGACTAGATGACATCAAAGAAGCCGCAGGAATCCCCAAACAGTCCAACGACGACATTGTTCAGGTTTCTAAACGCAGCCATGGTGAAGGCGTGTGGAAAGAATTGCTCGTTCATCCCACACCAGCCGTTCGCCATATTTTAATCGCGGCTCTTGGTATCCACTTCTTTGCACAATCGTCAGGTATAGATTCTGTCGTTTTGTACAGCCCCAGGATCTTCGAAAAGCTCCGATCGATCTTCCCGTTGCAGCTGCGCGCGCAAGGGTGTAGTATGGGAGTGGCCGTAAATAGGGTGACGAGCGGGGTCATCTCCATGACCTTTATTTCATTGTATAAGGCCATCACGATTGGGGGAGCCTTCTTTCTTTATGCGGGAATTGCTGCGGTTGGTTGGGTGTTCTTTTATACGTTGTACCCAGAAACACAGGGCCGAACTCTTGAAGATATGGAAGTCTTGTTTGGTAAATACCATAAGTGGAGAGAAGCCAATGCCATGCTTAAGAAGACTAAGCAAGTTGATGGTGAAGACAACAAGGGTCAAATCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005354 GO:0005355 GO:0005365 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0007275 GO:0008150 GO:0008324 GO:0008643 GO:0008645 GO:0009653 GO:0009791 GO:0010015 GO:0010101 GO:0010102 GO:0010311 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015145 GO:0015146 GO:0015148 GO:0015149 GO:0015166 GO:0015168 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015575 GO:0015576 GO:0015591 GO:0015672 GO:0015749 GO:0015750 GO:0015752 GO:0015753 GO:0015757 GO:0015791 GO:0015793 GO:0015795 GO:0015797 GO:0015798 GO:0015850 GO:0016020 GO:0022622 GO:0022804 GO:0022857 GO:0022890 GO:0032501 GO:0032502 GO:0034219 GO:0034220 GO:0042995 GO:0044464 GO:0046323 GO:0048364 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048856 GO:0051119 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0090406 GO:0090696 GO:0090697 GO:0090698 GO:0098655 GO:0098660 GO:0098662 GO:0099402 GO:0120025 GO:1901618 GO:1902600 GO:1904659 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sugar_tr

Protein Analysis

264

Amino Acids

29.25

Weight (kDa)

9.37

Isoelectric Point (pI)

50.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sugar_tr	PF00083	3 - 157	1.8e-27	Sugar (and other) transporter
Sugar_tr	PF00083	160 - 234	4.4e-12	Sugar (and other) transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	543
AccII	CGCG	4 cut(s)	107, 389, 498, 500
AciI	CCGC	5 cut(s)	267, 389, 543, 614, 626
AclWI	GGATC	1 cut(s)	464
AcoI	YGGCCR	1 cut(s)	522
AcyI	GRCGYC	2 cut(s)	99, 192
AfaI	GTAC	3 cut(s)	38, 446, 656
AfiI	CCNNNNNNNGG	1 cut(s)	531
AflII	CTTAAG	1 cut(s)	740
AgsI	TTSAA	2 cut(s)	79, 683
AjnI	CCWGG	1 cut(s)	452
AjuI	GAANNNNNNNTTGG	4 cut(s)	38, 70, 684, 716
AluBI	AGCT	4 cut(s)	64, 241, 469, 493
AluI	AGCT	4 cut(s)	64, 241, 469, 493
Alw26I	GTCTC	1 cut(s)	183
AlwI	GGATC	1 cut(s)	464
Ama87I	CYCGRG	1 cut(s)	149
AoxI	GGCC	3 cut(s)	522, 579, 670
ApeKI	GCWGC	4 cut(s)	318, 490, 493, 623
AspLEI	GCGC	4 cut(s)	107, 498, 500, 502
AspS9I	GGNCC	1 cut(s)	670
AsuHPI	GGTGA	3 cut(s)	338, 547, 776
AsuII	TTCGAA	1 cut(s)	462
AvaI	CYCGRG	1 cut(s)	149
BbsI	GAAGAC	2 cut(s)	752, 774
BbvI	GCAGC	4 cut(s)	330, 480, 502, 610
BccI	CCATC	4 cut(s)	121, 137, 590, 755
BceAI	ACGGC	2 cut(s)	353, 509
BciT130I	CCWGG	1 cut(s)	454
BciVI	GTATCC	2 cut(s)	52, 410
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	2 cut(s)	248, 790
BfrI	CTTAAG	1 cut(s)	740
BfuI	GTATCC	2 cut(s)	52, 410
BglI	GCCNNNNNGGC	1 cut(s)	163
BisI	GCNGC	6 cut(s)	267, 319, 390, 491, 494, 624
BlsI	GCNGC	6 cut(s)	268, 320, 391, 492, 495, 625
Bme1390I	CCNGG	1 cut(s)	454
BmeT110I	CYCGRG	1 cut(s)	149
BmgT120I	GGNCC	1 cut(s)	670
BmiI	GGNNCC	1 cut(s)	598
BmrFI	CCNGG	1 cut(s)	454
BmrI	ACTGGG	1 cut(s)	41
BmuI	ACTGGG	1 cut(s)	41
BpiI	GAAGAC	2 cut(s)	752, 774
BpmI	CTGGAG	1 cut(s)	103
Bpu14I	TTCGAA	1 cut(s)	462
Bsa29I	ATCGAT	1 cut(s)	476
BsaAI	YACGTR	1 cut(s)	40
BsaHI	GRCGYC	2 cut(s)	99, 192
BsaJI	CCNNGG	2 cut(s)	322, 452
BsaXI	ACNNNNNCTCC	2 cut(s)	510, 540
Bsc4I	CCNNNNNNNGG	1 cut(s)	531
Bse1I	ACTGG	2 cut(s)	36, 86
BseBI	CCWGG	1 cut(s)	454
BseCI	ATCGAT	1 cut(s)	476
BseDI	CCNNGG	2 cut(s)	322, 452
BseGI	GGATG	1 cut(s)	355
BseLI	CCNNNNNNNGG	1 cut(s)	531
BseMII	CTCAG	1 cut(s)	256
BseNI	ACTGG	2 cut(s)	36, 86
BsePI	GCGCGC	2 cut(s)	496, 498
BseXI	GCAGC	4 cut(s)	330, 480, 502, 610
Bsh1236I	CGCG	4 cut(s)	107, 389, 498, 500
Bsh1285I	CGRYCG	1 cut(s)	476
BshFI	GGCC	3 cut(s)	524, 581, 672
BshVI	ATCGAT	1 cut(s)	476
BsiEI	CGRYCG	1 cut(s)	476
BsiHKCI	CYCGRG	1 cut(s)	149
BslI	CCNNNNNNNGG	1 cut(s)	531
BsmAI	GTCTC	1 cut(s)	183
BsmBI	CGTCTC	1 cut(s)	183
BsnI	GGCC	3 cut(s)	524, 581, 672
BsoBI	CYCGRG	1 cut(s)	149
Bsp119I	TTCGAA	1 cut(s)	462
Bsp1407I	TGTACA	1 cut(s)	444
Bsp143I	GATC	3 cut(s)	456, 473, 477
Bsp19I	CCATGG	1 cut(s)	322
BspACI	CCGC	5 cut(s)	267, 389, 543, 614, 626
BspANI	GGCC	3 cut(s)	524, 581, 672
BspCNI	CTCAG	1 cut(s)	255
BspDI	ATCGAT	1 cut(s)	476
BspFNI	CGCG	4 cut(s)	107, 389, 498, 500
BspLI	GGNNCC	1 cut(s)	598
BspPI	GGATC	1 cut(s)	464
BspT104I	TTCGAA	1 cut(s)	462
BspTI	CTTAAG	1 cut(s)	740
BsrBI	CCGCTC	1 cut(s)	543
BsrGI	TGTACA	1 cut(s)	444
BsrI	ACTGG	2 cut(s)	36, 86
BssECI	CCNNGG	2 cut(s)	322, 452
BssHII	GCGCGC	2 cut(s)	496, 498
BssMI	GATC	3 cut(s)	456, 473, 477
BssNI	GRCGYC	2 cut(s)	99, 192
BssT1I	CCWWGG	1 cut(s)	322
Bst2UI	CCWGG	1 cut(s)	454
Bst4CI	ACNGT	1 cut(s)	285
Bst6I	CTCTTC	1 cut(s)	225
BstACI	GRCGYC	2 cut(s)	99, 192
BstAFI	CTTAAG	1 cut(s)	740
BstAUI	TGTACA	1 cut(s)	444
BstBAI	YACGTR	1 cut(s)	40
BstBI	TTCGAA	1 cut(s)	462
BstC8I	GCNNGC	2 cut(s)	498, 500
BstDEI	CTNAG	3 cut(s)	139, 242, 750
BstDSI	CCRYGG	1 cut(s)	322
BstF5I	GGATG	1 cut(s)	355
BstFNI	CGCG	4 cut(s)	107, 389, 498, 500
BstHHI	GCGC	4 cut(s)	107, 498, 500, 502
BstKTI	GATC	3 cut(s)	459, 476, 480
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	3 cut(s)	456, 473, 477
BstMCI	CGRYCG	1 cut(s)	476
BstMWI	GCNNNNNNNGC	5 cut(s)	154, 163, 172, 499, 620
BstNI	CCWGG	1 cut(s)	454
BstSCI	CCNGG	1 cut(s)	452
BstSNI	TACGTA	1 cut(s)	40
BstUI	CGCG	4 cut(s)	107, 389, 498, 500
BstV1I	GCAGC	4 cut(s)	330, 480, 502, 610
BstV2I	GAAGAC	2 cut(s)	752, 774
BstX2I	RGATCY	1 cut(s)	456
BstYI	RGATCY	1 cut(s)	456
Bsu15I	ATCGAT	1 cut(s)	476
BsuI	GTATCC	2 cut(s)	52, 410
BsuRI	GGCC	3 cut(s)	524, 581, 672
BsuTUI	ATCGAT	1 cut(s)	476
BtgI	CCRYGG	1 cut(s)	322
BtsCI	GGATG	1 cut(s)	355
Cac8I	GCNNGC	2 cut(s)	498, 500
CfoI	GCGC	4 cut(s)	107, 498, 500, 502
Cfr13I	GGNCC	1 cut(s)	670
ClaI	ATCGAT	1 cut(s)	476
CseI	GACGC	2 cut(s)	88, 200
Csp6I	GTAC	3 cut(s)	37, 445, 655
CviAII	CATG	6 cut(s)	91, 145, 172, 323, 556, 736
CviQI	GTAC	3 cut(s)	37, 445, 655
DdeI	CTNAG	3 cut(s)	139, 242, 750
DpnI	GATC	3 cut(s)	458, 475, 479
DpnII	GATC	3 cut(s)	456, 473, 477
EaeI	YGGCCR	1 cut(s)	522
Eam1104I	CTCTTC	1 cut(s)	225
EarI	CTCTTC	1 cut(s)	225
Eco105I	TACGTA	1 cut(s)	40
Eco130I	CCWWGG	1 cut(s)	322
Eco88I	CYCGRG	1 cut(s)	149
EcoRII	CCWGG	1 cut(s)	452
EcoT14I	CCWWGG	1 cut(s)	322
ErhI	CCWWGG	1 cut(s)	322
Esp3I	CGTCTC	1 cut(s)	183
FaeI	CATG	6 cut(s)	94, 148, 175, 326, 559, 739
FalI	AAGNNNNNCTT	2 cut(s)	168, 200
FatI	CATG	6 cut(s)	90, 144, 171, 322, 555, 735
FauI	CCCGC	2 cut(s)	536, 607
Fnu4HI	GCNGC	6 cut(s)	267, 319, 390, 491, 494, 624
FokI	GGATG	1 cut(s)	342
Fsp4HI	GCNGC	6 cut(s)	267, 319, 390, 491, 494, 624
FspBI	CTAG	2 cut(s)	248, 790
GlaI	GCGC	4 cut(s)	106, 497, 499, 501
GluI	GCNGC	6 cut(s)	267, 319, 390, 491, 494, 624
GsuI	CTGGAG	1 cut(s)	103
HaeIII	GGCC	3 cut(s)	524, 581, 672
HgaI	GACGC	2 cut(s)	88, 200
HhaI	GCGC	4 cut(s)	107, 498, 500, 502
Hin1I	GRCGYC	2 cut(s)	99, 192
Hin1II	CATG	6 cut(s)	94, 148, 175, 326, 559, 739
Hin6I	GCGC	4 cut(s)	105, 496, 498, 500
HinP1I	GCGC	4 cut(s)	105, 496, 498, 500
HinfI	GANTC	4 cut(s)	152, 221, 273, 431
HphI	GGTGA	3 cut(s)	338, 547, 776
Hpy188I	TCNGA	3 cut(s)	220, 245, 473
Hpy188III	TCNNGA	2 cut(s)	586, 680
Hpy99I	CGWCG	2 cut(s)	104, 296
HpyAV	CCTTC	3 cut(s)	64, 323, 610
HpyCH4III	ACNGT	1 cut(s)	285
HpyCH4IV	ACGT	2 cut(s)	39, 650
HpyCH4V	TGCA	3 cut(s)	175, 413, 490
HpyF10VI	GCNNNNNNNGC	5 cut(s)	154, 163, 172, 499, 620
HpyF3I	CTNAG	3 cut(s)	139, 242, 750
HpySE526I	ACGT	2 cut(s)	39, 650
Hsp92I	GRCGYC	2 cut(s)	99, 192
Hsp92II	CATG	6 cut(s)	94, 148, 175, 326, 559, 739
HspAI	GCGC	4 cut(s)	105, 496, 498, 500
Kzo9I	GATC	3 cut(s)	456, 473, 477
LmnI	GCTCC	3 cut(s)	69, 474, 596
Lsp1109I	GCAGC	4 cut(s)	330, 480, 502, 610
MaeI	CTAG	2 cut(s)	248, 790
MaeII	ACGT	2 cut(s)	39, 650
MaeIII	GTNAC	1 cut(s)	535
MalI	GATC	3 cut(s)	458, 475, 479
MbiI	CCGCTC	1 cut(s)	543
MboI	GATC	3 cut(s)	456, 473, 477
MboII	GAAGA	6 cut(s)	242, 451, 472, 695, 757, 779
MflI	RGATCY	1 cut(s)	456
MluCI	AATT	2 cut(s)	344, 618
MlyI	GAGTC	1 cut(s)	161
MmeI	TCCRAC	2 cut(s)	69, 312
MnlI	CCTC	2 cut(s)	78, 168
MseI	TTAA	3 cut(s)	15, 383, 741
MslI	CAYNNNNRTG	1 cut(s)	554
MspA1I	CMGCKG	1 cut(s)	493
MspCI	CTTAAG	1 cut(s)	740
MspR9I	CCNGG	1 cut(s)	454
MvaI	CCWGG	1 cut(s)	454
MvnI	CGCG	4 cut(s)	107, 389, 498, 500
MwoI	GCNNNNNNNGC	5 cut(s)	154, 163, 172, 499, 620
NcoI	CCATGG	1 cut(s)	322
NdeII	GATC	3 cut(s)	456, 473, 477
NlaIII	CATG	6 cut(s)	94, 148, 175, 326, 559, 739
NlaIV	GGNNCC	1 cut(s)	598
NmeAIII	GCCGAG	1 cut(s)	75
NmuCI	GTSAC	1 cut(s)	535
NspV	TTCGAA	1 cut(s)	462
PauI	GCGCGC	2 cut(s)	496, 498
PcsI	WCGNNNNNNNCGW	1 cut(s)	482
PfeI	GAWTC	3 cut(s)	221, 273, 431
PkrI	GCNGC	6 cut(s)	268, 320, 391, 492, 495, 625
Ple19I	CGATCG	1 cut(s)	476
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
Ppu21I	YACGTR	1 cut(s)	40
Psp6I	CCWGG	1 cut(s)	452
PspGI	CCWGG	1 cut(s)	452
PspN4I	GGNNCC	1 cut(s)	598
PspPI	GGNCC	1 cut(s)	670
PsuI	RGATCY	1 cut(s)	456
PteI	GCGCGC	2 cut(s)	496, 498
PvuI	CGATCG	1 cut(s)	476
PvuII	CAGCTG	1 cut(s)	493
RsaI	GTAC	3 cut(s)	38, 446, 656
RsaNI	GTAC	3 cut(s)	37, 445, 655
RseI	CAYNNNNRTG	1 cut(s)	554
SaqAI	TTAA	3 cut(s)	15, 383, 741
SatI	GCNGC	6 cut(s)	267, 319, 390, 491, 494, 624
Sau3AI	GATC	3 cut(s)	456, 473, 477
Sau96I	GGNCC	1 cut(s)	670
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	454
SfuI	TTCGAA	1 cut(s)	462
SmiMI	CAYNNNNRTG	1 cut(s)	554
SmlI	CTYRAG	1 cut(s)	740
SmoI	CTYRAG	1 cut(s)	740
SnaBI	TACGTA	1 cut(s)	40
Sse9I	AATT	2 cut(s)	344, 618
SsiI	CCGC	5 cut(s)	267, 389, 543, 614, 626
SspI	AATATT	1 cut(s)	19
SspMI	CTAG	2 cut(s)	248, 790
StyD4I	CCNGG	1 cut(s)	452
StyI	CCWWGG	1 cut(s)	322
TaaI	ACNGT	1 cut(s)	285
TaiI	ACGT	2 cut(s)	42, 653
TaqI	TCGA	2 cut(s)	462, 476
TasI	AATT	2 cut(s)	344, 618
TatI	WGTACW	1 cut(s)	444
TauI	GCSGC	2 cut(s)	269, 392
TfiI	GAWTC	3 cut(s)	221, 273, 431
Tru1I	TTAA	3 cut(s)	15, 383, 741
Tru9I	TTAA	3 cut(s)	15, 383, 741
TseFI	GTSAC	1 cut(s)	535
TseI	GCWGC	4 cut(s)	318, 490, 493, 623
Tsp45I	GTSAC	1 cut(s)	535
TspDTI	ATGAA	3 cut(s)	17, 344, 558
Vha464I	CTTAAG	1 cut(s)	740
XspI	CTAG	2 cut(s)	248, 790

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.