Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

7896412 .. 7897077

Gene Structure 666 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGGAGGCCGTCAATACACGAGGACTTTGGAGGAGTCGAAGAATTTCAAGGCGATTGGTGATCCCTTTACTGAAGAGTTCTTTCAGATGTTTCAATCTATTTATAAGCAGCAAATACTAATGCTTGAGAAGTTGCAAATGCGAAAGAACAAGCTCGATAAGAAGCTCAAATGTATTAATGCTTGGAGGAAGGTCACGGGTATGATATTTGTTGCTACATTTGCTGCTGTGTTGATTTGTTCTGTTGTGGCGGCAGCCATGGCTGCTCGGCCGGTTGCAGCAGCTCTAGCTGCGGCTAGTTCTATCCCGGTAGGCTCAATGGGAAATTGGATTGACTCTTTGTGGAAAAACTATGAAAATGCTTTGAGGGGTCAAAAGGAAGTGATTAGTTCAATGCAAGTAGGAACTTATGTTGCCATTAAGGACTTGGACAACATTCGGGTTCTCATTGATCGATTGGAAATTGATATCGAGTCCCTCTTGCACAATGCAAGCTTTGCCATTGACGAAGAAGCTGTGAAAGTTGCAATAGAGGAGATTAAGAAGTTGGGAGTATTTATGAAGAATGTAGAGGATTTGGGAACCCAAGCTGATATCTGCAGCCGCGACATTCAAAGAGCAAGGACTGTGGTTCTGCAGACGATCATCAAACATTCCAACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF677

Protein Analysis

222

Amino Acids

24.79

Weight (kDa)

8.91

Isoelectric Point (pI)

35.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF677	PF05055	4 - 215	3.1e-81	Protein of unknown function (DUF677)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	105
AccII	CGCG	1 cut(s)	606
AciI	CCGC	3 cut(s)	251, 293, 604
AclWI	GGATC	1 cut(s)	56
AcoI	YGGCCR	1 cut(s)	269
AcsI	RAATTY	1 cut(s)	43
AcuI	CTGAAG	1 cut(s)	93
AgsI	TTSAA	4 cut(s)	49, 95, 393, 614
AluBI	AGCT	7 cut(s)	154, 166, 284, 290, 495, 515, 590
AluI	AGCT	7 cut(s)	154, 166, 284, 290, 495, 515, 590
AlwI	GGATC	1 cut(s)	56
AoxI	GGCC	2 cut(s)	7, 269
ApeKI	GCWGC	8 cut(s)	109, 224, 254, 263, 278, 281, 290, 600
ApoI	RAATTY	1 cut(s)	43
AseI	ATTAAT	1 cut(s)	177
Asp700I	GAANNNNTTC	1 cut(s)	44
AsuC2I	CCSGG	1 cut(s)	308
AsuHPI	GGTGA	1 cut(s)	71
BauI	CACGAG	1 cut(s)	19
BbvI	GCAGC	8 cut(s)	121, 211, 250, 266, 277, 290, 293, 612
BcnI	CCSGG	1 cut(s)	308
BfaI	CTAG	2 cut(s)	287, 297
BfmI	CTRYAG	2 cut(s)	598, 635
Bme1390I	CCNGG	1 cut(s)	308
BmiI	GGNNCC	1 cut(s)	583
BmrFI	CCNGG	1 cut(s)	308
BpuEI	CTTGAG	1 cut(s)	146
BpuMI	CCSGG	1 cut(s)	308
Bsa29I	ATCGAT	1 cut(s)	454
BsaJI	CCNNGG	1 cut(s)	258
Bse118I	RCCGGY	1 cut(s)	271
BseCI	ATCGAT	1 cut(s)	454
BseDI	CCNNGG	1 cut(s)	258
BseRI	GAGGAG	2 cut(s)	47, 548
BseX3I	CGGCCG	1 cut(s)	269
BseXI	GCAGC	8 cut(s)	121, 211, 250, 266, 277, 290, 293, 612
Bsh1236I	CGCG	1 cut(s)	606
Bsh1285I	CGRYCG	1 cut(s)	272
BshFI	GGCC	2 cut(s)	9, 271
BshVI	ATCGAT	1 cut(s)	454
BsiEI	CGRYCG	1 cut(s)	272
BsiSI	CCGG	2 cut(s)	272, 308
BslFI	GGGAC	1 cut(s)	460
BsmFI	GGGAC	1 cut(s)	460
BsnI	GGCC	2 cut(s)	9, 271
Bsp143I	GATC	3 cut(s)	61, 451, 642
Bsp19I	CCATGG	1 cut(s)	258
BspACI	CCGC	3 cut(s)	251, 293, 604
BspANI	GGCC	2 cut(s)	9, 271
BspDI	ATCGAT	1 cut(s)	454
BspFNI	CGCG	1 cut(s)	606
BspLI	GGNNCC	1 cut(s)	583
BspMAI	CTGCAG	2 cut(s)	602, 639
BspPI	GGATC	1 cut(s)	56
BsrFI	RCCGGY	1 cut(s)	271
BssAI	RCCGGY	1 cut(s)	271
BssECI	CCNNGG	1 cut(s)	258
BssMI	GATC	3 cut(s)	61, 451, 642
BssSI	CACGAG	1 cut(s)	19
BssT1I	CCWWGG	1 cut(s)	258
Bst2BI	CACGAG	1 cut(s)	19
Bst4CI	ACNGT	1 cut(s)	628
Bst6I	CTCTTC	1 cut(s)	69
BstAPI	GCANNNNNTGC	1 cut(s)	497
BstC8I	GCNNGC	1 cut(s)	493
BstDSI	CCRYGG	1 cut(s)	258
BstFNI	CGCG	1 cut(s)	606
BstKTI	GATC	3 cut(s)	64, 454, 645
BstMBI	GATC	3 cut(s)	61, 451, 642
BstMCI	CGRYCG	1 cut(s)	272
BstMWI	GCNNNNNNNGC	6 cut(s)	221, 260, 263, 287, 290, 497
BstSCI	CCNGG	1 cut(s)	306
BstSFI	CTRYAG	2 cut(s)	598, 635
BstUI	CGCG	1 cut(s)	606
BstV1I	GCAGC	8 cut(s)	121, 211, 250, 266, 277, 290, 293, 612
BstZI	CGGCCG	1 cut(s)	269
Bsu15I	ATCGAT	1 cut(s)	454
BsuRI	GGCC	2 cut(s)	9, 271
BsuTUI	ATCGAT	1 cut(s)	454
BtgI	CCRYGG	1 cut(s)	258
Cac8I	GCNNGC	1 cut(s)	493
Cfr10I	RCCGGY	1 cut(s)	271
ClaI	ATCGAT	1 cut(s)	454
CspCI	CAANNNNNGTGG	2 cut(s)	609, 644
CviAII	CATG	1 cut(s)	259
DpnI	GATC	3 cut(s)	63, 453, 644
DpnII	GATC	3 cut(s)	61, 451, 642
EaeI	YGGCCR	1 cut(s)	269
EagI	CGGCCG	1 cut(s)	269
Eam1104I	CTCTTC	1 cut(s)	69
EarI	CTCTTC	1 cut(s)	69
EclXI	CGGCCG	1 cut(s)	269
Eco130I	CCWWGG	1 cut(s)	258
Eco32I	GATATC	2 cut(s)	469, 595
Eco52I	CGGCCG	1 cut(s)	269
Eco57I	CTGAAG	1 cut(s)	93
EcoRV	GATATC	2 cut(s)	469, 595
EcoT14I	CCWWGG	1 cut(s)	258
ErhI	CCWWGG	1 cut(s)	258
FaeI	CATG	1 cut(s)	262
FaiI	YATR	6 cut(s)	105, 203, 260, 354, 411, 560
FaqI	GGGAC	1 cut(s)	460
FatI	CATG	1 cut(s)	258
FspBI	CTAG	2 cut(s)	287, 297
HaeIII	GGCC	2 cut(s)	9, 271
HapII	CCGG	2 cut(s)	272, 308
Hin1II	CATG	1 cut(s)	262
HindIII	AAGCTT	1 cut(s)	493
HinfI	GANTC	3 cut(s)	35, 335, 473
HpaII	CCGG	2 cut(s)	272, 308
HphI	GGTGA	1 cut(s)	71
Hpy188I	TCNGA	1 cut(s)	87
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	1 cut(s)	628
HpyCH4V	TGCA	8 cut(s)	136, 278, 397, 484, 491, 527, 600, 637
HpyF10VI	GCNNNNNNNGC	6 cut(s)	221, 260, 263, 287, 290, 497
Hsp92II	CATG	1 cut(s)	262
Kzo9I	GATC	3 cut(s)	61, 451, 642
LpnPI	CCDG	2 cut(s)	285, 321
Lsp1109I	GCAGC	8 cut(s)	121, 211, 250, 266, 277, 290, 293, 612
MaeI	CTAG	2 cut(s)	287, 297
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	3 cut(s)	63, 453, 644
MboI	GATC	3 cut(s)	61, 451, 642
MboII	GAAGA	4 cut(s)	52, 86, 521, 574
MluCI	AATT	3 cut(s)	43, 325, 462
MlyI	GAGTC	3 cut(s)	44, 329, 482
MnlI	CCTC	7 cut(s)	15, 25, 180, 360, 488, 526, 565
MroXI	GAANNNNTTC	1 cut(s)	44
MseI	TTAA	3 cut(s)	177, 420, 540
MslI	CAYNNNNRTG	1 cut(s)	200
MspI	CCGG	2 cut(s)	272, 308
MspR9I	CCNGG	1 cut(s)	308
MvnI	CGCG	1 cut(s)	606
MwoI	GCNNNNNNNGC	6 cut(s)	221, 260, 263, 287, 290, 497
NciI	CCSGG	1 cut(s)	308
NcoI	CCATGG	1 cut(s)	258
NdeII	GATC	3 cut(s)	61, 451, 642
NlaIII	CATG	1 cut(s)	262
NlaIV	GGNNCC	1 cut(s)	583
NmeAIII	GCCGAG	1 cut(s)	247
NmuCI	GTSAC	1 cut(s)	193
PdmI	GAANNNNTTC	1 cut(s)	44
PleI	GAGTC	3 cut(s)	43, 329, 481
PpsI	GAGTC	3 cut(s)	43, 329, 481
PshBI	ATTAAT	1 cut(s)	177
PsiI	TTATAA	1 cut(s)	105
PspN4I	GGNNCC	1 cut(s)	583
PstI	CTGCAG	2 cut(s)	602, 639
RseI	CAYNNNNRTG	1 cut(s)	200
SaqAI	TTAA	3 cut(s)	177, 420, 540
Sau3AI	GATC	3 cut(s)	61, 451, 642
SchI	GAGTC	3 cut(s)	44, 329, 482
ScrFI	CCNGG	1 cut(s)	308
SetI	ASST	8 cut(s)	156, 168, 195, 286, 292, 497, 517, 592
SfcI	CTRYAG	2 cut(s)	598, 635
SmiMI	CAYNNNNRTG	1 cut(s)	200
SmlI	CTYRAG	1 cut(s)	125
SmoI	CTYRAG	1 cut(s)	125
Sse9I	AATT	3 cut(s)	43, 325, 462
SsiI	CCGC	3 cut(s)	251, 293, 604
SspMI	CTAG	2 cut(s)	287, 297
StyD4I	CCNGG	1 cut(s)	306
StyI	CCWWGG	1 cut(s)	258
TaaI	ACNGT	1 cut(s)	628
TaqI	TCGA	4 cut(s)	38, 156, 454, 471
TasI	AATT	3 cut(s)	43, 325, 462
TauI	GCSGC	3 cut(s)	254, 296, 606
Tru1I	TTAA	3 cut(s)	177, 420, 540
Tru9I	TTAA	3 cut(s)	177, 420, 540
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	8 cut(s)	109, 224, 254, 263, 278, 281, 290, 600
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	369, 575
VspI	ATTAAT	1 cut(s)	177
XapI	RAATTY	1 cut(s)	43
XcmI	CCANNNNNNNNNTGG	1 cut(s)	424
XmnI	GAANNNNTTC	1 cut(s)	44
XspI	CTAG	2 cut(s)	287, 297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.