pycom05g06200

Cytochrome c biogenesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Reverse (-)
8120096 .. 8121903
1808 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1113 bp
ATGGAGGCTTTAAACCCCACCACAGCCCCCAAATCATGTCTACCCAGAACCCATTTTCTCAAGGCCCCTCTCCTCCACTGCCCCTTCAAGCCCATCACACTCTCTTTTCACAATTTTCAAATTCACAGACGTTCCTTCCGGCAGCCACCTCTCTCCCTCTCAGTCACCACCACTTGTGGGCTGAAGACCCCTCAAGACAGGAAGAAGAGCAAGAAAAAAGGAAATAACATAATCAAGCAGATTATACTCTCCGAAAGAGTGCCACCAACTCTGGTGGAGAAGAGTGGCGACGCCGACGGAGGCGAGGAAGCTCCGGTCAAGTCTGGGAGTGGGAGTGGGAGTGGGGTGATGGGTCTGATGAAAAGGTTGTCGAGAAGGATTCTTTCGGTTCTGTCTTATCTGCCTTTGGCTATTGGAGAAATGTTTGCCATTGCTGGTCTTATGGCTCTGGGAACTTTCATTGATCAAGGTGAGGCCCCCGATTTCTATTTCGATAAATACCCTGAAAGTAATCCCGTGTTGGGAATTTTCACTTGGAGATGGGTTCTCACCCTTGGGTTTGATCACATGTTCACATCCCCCATTTTCCTTGCACTATTGACTCTCCTCGGTGCATCACTAATGGCCTGCACTTACACTACACAAATACCCCTTGTCAAGGTTGCAAGAAGATGGAACTTCATGCAATCTTCTGAGGCCATCCACAAGCAGGAATTTTCGGATTCTTTGCCGAGAGCATCAGTTCAAGATTTGGGTGTTGTTCTTATGGGAGCTGGATATGAGGTATTCTTGAAGGGGCCTTCTTTATATGCTTTCAAGGGGCTGGCTGGTCGGTTTGCCCCTATTGGAGTACATCTAGCAATGCTGCTAATAATGGTAGGTGGAACTCTTAGTGCAAGCGGGAGCTTCAAAGGAACAGTTACGGTTCCACAGGGTTTGAATTTTGCTATAGGAGATGTGATGCACCCTATCGGGTTTCTCTGTACTCCAACTGAGGCTTTTAATACAGAGGTTCATGTCAACAAATTCTACATGAACTACTACGACAGTGGTGAGGATAACGTTTATAATGATGTAATCATCTCCCAAATTTTGCTTGCTCAGTACTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ResB

Protein Analysis

371

Amino Acids

40.64

Weight (kDa)

9.06

Isoelectric Point (pI)

49.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ResB PF05140 136 - 352 7.4e-34 ResB-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1068
AccI GTMKAC 1 cut(s) 40
AciI CCGC 1 cut(s) 900
AclI AACGTT 1 cut(s) 1062
AcsI RAATTY 6 cut(s) 120, 525, 713, 940, 1025, 1089
AcuI CTGAAG 1 cut(s) 203
AcyI GRCGYC 1 cut(s) 291
AfaI GTAC 3 cut(s) 852, 985, 1106
AfiI CCNNNNNNNGG 4 cut(s) 177, 521, 658, 709
AflIII ACRYGT 1 cut(s) 567
AgsI TTSAA 7 cut(s) 88, 119, 746, 793, 817, 910, 940
AjuI GAANNNNNNNTTGG 2 cut(s) 517, 549
AluBI AGCT 3 cut(s) 311, 773, 906
AluI AGCT 3 cut(s) 311, 773, 906
AoxI GGCC 5 cut(s) 63, 474, 624, 696, 797
ApeKI GCWGC 2 cut(s) 142, 865
ApoI RAATTY 6 cut(s) 120, 525, 713, 940, 1025, 1089
AspS9I GGNCC 3 cut(s) 64, 475, 797
AsuHPI GGTGA 5 cut(s) 157, 358, 482, 541, 1064
BbsI GAAGAC 1 cut(s) 191
BbvI GCAGC 2 cut(s) 154, 852
BccI CCATC 5 cut(s) 101, 343, 534, 666, 707
BclI TGATCA 2 cut(s) 463, 562
BfaI CTAG 1 cut(s) 857
BfmI CTRYAG 1 cut(s) 948
BisI GCNGC 2 cut(s) 143, 866
BlsI GCNGC 2 cut(s) 144, 867
BmcAI AGTACT 1 cut(s) 1106
BmgT120I GGNCC 3 cut(s) 64, 475, 797
BmiI GGNNCC 4 cut(s) 66, 477, 798, 927
BmsI GCATC 3 cut(s) 623, 746, 951
BpiI GAAGAC 1 cut(s) 191
BpuEI CTTGAG 2 cut(s) 44, 177
BsaHI GRCGYC 1 cut(s) 291
BsaJI CCNNGG 2 cut(s) 553, 607
BsaWI WCCGGW 1 cut(s) 313
BsaXI ACNNNNNCTCC 4 cut(s) 319, 325, 349, 355
Bsc4I CCNNNNNNNGG 4 cut(s) 177, 521, 658, 709
Bse3DI GCAATG 2 cut(s) 429, 867
BseDI CCNNGG 2 cut(s) 553, 607
BseGI GGATG 2 cut(s) 575, 699
BseLI CCNNNNNNNGG 4 cut(s) 177, 521, 658, 709
BseMI GCAATG 2 cut(s) 429, 867
BseMII CTCAG 3 cut(s) 174, 684, 984
BseRI GAGGAG 2 cut(s) 62, 596
BseXI GCAGC 2 cut(s) 154, 852
BsgI GTGCAG 1 cut(s) 613
BshFI GGCC 5 cut(s) 65, 476, 626, 698, 799
BsiSI CCGG 2 cut(s) 139, 314
BslI CCNNNNNNNGG 4 cut(s) 177, 521, 658, 709
BsnI GGCC 5 cut(s) 65, 476, 626, 698, 799
Bsp143I GATC 2 cut(s) 463, 562
BspACI CCGC 1 cut(s) 900
BspANI GGCC 5 cut(s) 65, 476, 626, 698, 799
BspCNI CTCAG 3 cut(s) 173, 685, 985
BspLI GGNNCC 4 cut(s) 66, 477, 798, 927
BspQI GCTCTTC 1 cut(s) 200
BsrDI GCAATG 2 cut(s) 429, 867
BssECI CCNNGG 2 cut(s) 553, 607
BssMI GATC 2 cut(s) 463, 562
BssNI GRCGYC 1 cut(s) 291
BssT1I CCWWGG 1 cut(s) 553
Bst4CI ACNGT 3 cut(s) 919, 925, 1049
Bst6I CTCTTC 2 cut(s) 200, 275
BstACI GRCGYC 1 cut(s) 291
BstC8I GCNNGC 4 cut(s) 628, 825, 898, 1098
BstDEI CTNAG 5 cut(s) 160, 693, 890, 993, 1101
BstENI CCTNNNNNAGG 1 cut(s) 656
BstF5I GGATG 2 cut(s) 575, 699
BstKTI GATC 2 cut(s) 466, 565
BstMBI GATC 2 cut(s) 463, 562
BstNSI RCATGY 1 cut(s) 571
BstSFI CTRYAG 1 cut(s) 948
BstV1I GCAGC 2 cut(s) 154, 852
BstV2I GAAGAC 1 cut(s) 191
BsuRI GGCC 5 cut(s) 65, 476, 626, 698, 799
BtsCI GGATG 2 cut(s) 575, 699
BtsI GCAGTG 1 cut(s) 76
BtsIMutI CAGTG 2 cut(s) 76, 1054
Cac8I GCNNGC 4 cut(s) 628, 825, 898, 1098
Cfr13I GGNCC 3 cut(s) 64, 475, 797
CseI GACGC 1 cut(s) 299
Csp6I GTAC 3 cut(s) 851, 984, 1105
CspCI CAANNNNNGTGG 4 cut(s) 255, 290, 918, 953
CviAII CATG 5 cut(s) 36, 568, 682, 1016, 1033
CviQI GTAC 3 cut(s) 851, 984, 1105
DdeI CTNAG 5 cut(s) 160, 693, 890, 993, 1101
DpnI GATC 2 cut(s) 465, 564
DpnII GATC 2 cut(s) 463, 562
DraI TTTAAA 1 cut(s) 12
Eam1104I CTCTTC 2 cut(s) 200, 275
EarI CTCTTC 2 cut(s) 200, 275
Eco130I CCWWGG 1 cut(s) 553
Eco57I CTGAAG 1 cut(s) 203
EcoNI CCTNNNNNAGG 1 cut(s) 656
EcoO109I RGGNCCY 3 cut(s) 64, 475, 797
EcoT14I CCWWGG 1 cut(s) 553
ErhI CCWWGG 1 cut(s) 553
FaeI CATG 5 cut(s) 39, 571, 685, 1019, 1036
FatI CATG 5 cut(s) 35, 567, 681, 1015, 1032
FauI CCCGC 1 cut(s) 893
FbaI TGATCA 2 cut(s) 463, 562
FblI GTMKAC 1 cut(s) 40
Fnu4HI GCNGC 2 cut(s) 143, 866
FokI GGATG 2 cut(s) 562, 686
Fsp4HI GCNGC 2 cut(s) 143, 866
FspBI CTAG 1 cut(s) 857
GluI GCNGC 2 cut(s) 143, 866
HaeIII GGCC 5 cut(s) 65, 476, 626, 698, 799
HapII CCGG 2 cut(s) 139, 314
HgaI GACGC 1 cut(s) 299
Hin1I GRCGYC 1 cut(s) 291
Hin1II CATG 5 cut(s) 39, 571, 685, 1019, 1036
HincII GTYRAC 1 cut(s) 1021
HindII GTYRAC 1 cut(s) 1021
HinfI GANTC 3 cut(s) 379, 601, 722
HpaII CCGG 2 cut(s) 139, 314
HphI GGTGA 5 cut(s) 157, 358, 482, 541, 1064
Hpy166II GTNNAC 3 cut(s) 41, 573, 1021
Hpy188I TCNGA 4 cut(s) 253, 357, 694, 721
Hpy188III TCNNGA 4 cut(s) 194, 372, 746, 790
Hpy8I GTNNAC 3 cut(s) 41, 573, 1021
Hpy99I CGWCG 2 cut(s) 293, 299
HpyAV CCTTC 5 cut(s) 94, 145, 369, 787, 810
HpyCH4III ACNGT 3 cut(s) 919, 925, 1049
HpyCH4IV ACGT 2 cut(s) 130, 1062
HpyCH4V TGCA 7 cut(s) 593, 614, 630, 665, 685, 896, 964
HpyF3I CTNAG 5 cut(s) 160, 693, 890, 993, 1101
HpySE526I ACGT 2 cut(s) 130, 1062
Hsp92I GRCGYC 1 cut(s) 291
Hsp92II CATG 5 cut(s) 39, 571, 685, 1019, 1036
Ksp22I TGATCA 2 cut(s) 463, 562
Kzo9I GATC 2 cut(s) 463, 562
LguI GCTCTTC 1 cut(s) 200
LmnI GCTCC 3 cut(s) 316, 770, 903
Lsp1109I GCAGC 2 cut(s) 154, 852
LweI GCATC 3 cut(s) 623, 746, 951
MaeI CTAG 1 cut(s) 857
MaeII ACGT 2 cut(s) 130, 1062
MaeIII GTNAC 2 cut(s) 163, 919
MalI GATC 2 cut(s) 465, 564
MboI GATC 2 cut(s) 463, 562
MboII GAAGA 6 cut(s) 196, 214, 217, 292, 681, 681
MluCI AATT 7 cut(s) 112, 120, 525, 713, 940, 1025, 1089
MlyI GAGTC 1 cut(s) 595
MmeI TCCRAC 1 cut(s) 1013
MseI TTAA 2 cut(s) 11, 1002
MspI CCGG 2 cut(s) 139, 314
NdeII GATC 2 cut(s) 463, 562
NlaIII CATG 5 cut(s) 39, 571, 685, 1019, 1036
NlaIV GGNNCC 4 cut(s) 66, 477, 798, 927
NmeAIII GCCGAG 1 cut(s) 756
NmuCI GTSAC 1 cut(s) 163
NspI RCATGY 1 cut(s) 571
PciI ACATGT 1 cut(s) 567
PciSI GCTCTTC 1 cut(s) 200
PfeI GAWTC 2 cut(s) 379, 722
PkrI GCNGC 2 cut(s) 144, 867
PleI GAGTC 1 cut(s) 595
PpsI GAGTC 1 cut(s) 595
PscI ACATGT 1 cut(s) 567
PsiI TTATAA 1 cut(s) 1068
Psp1406I AACGTT 1 cut(s) 1062
PspN4I GGNNCC 4 cut(s) 66, 477, 798, 927
PspPI GGNCC 3 cut(s) 64, 475, 797
RsaI GTAC 3 cut(s) 852, 985, 1106
RsaNI GTAC 3 cut(s) 851, 984, 1105
SapI GCTCTTC 1 cut(s) 200
SaqAI TTAA 2 cut(s) 11, 1002
SatI GCNGC 2 cut(s) 143, 866
Sau3AI GATC 2 cut(s) 463, 562
Sau96I GGNCC 3 cut(s) 64, 475, 797
ScaI AGTACT 1 cut(s) 1106
SchI GAGTC 1 cut(s) 595
SfaNI GCATC 3 cut(s) 623, 746, 951
SfcI CTRYAG 1 cut(s) 948
SmlI CTYRAG 2 cut(s) 59, 192
SmoI CTYRAG 2 cut(s) 59, 192
Sse9I AATT 7 cut(s) 112, 120, 525, 713, 940, 1025, 1089
SsiI CCGC 1 cut(s) 900
SspMI CTAG 1 cut(s) 857
StyI CCWWGG 1 cut(s) 553
TaaI ACNGT 3 cut(s) 919, 925, 1049
TaiI ACGT 2 cut(s) 133, 1065
TaqI TCGA 2 cut(s) 371, 492
TasI AATT 7 cut(s) 112, 120, 525, 713, 940, 1025, 1089
TatI WGTACW 3 cut(s) 850, 983, 1104
TfiI GAWTC 2 cut(s) 379, 722
Tru1I TTAA 2 cut(s) 11, 1002
Tru9I TTAA 2 cut(s) 11, 1002
TscAI CASTG 2 cut(s) 83, 1054
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 2 cut(s) 142, 865
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 5 cut(s) 374, 448, 670, 1004, 1049
TspGWI ACGGA 1 cut(s) 312
TspRI CASTG 2 cut(s) 83, 1054
XagI CCTNNNNNAGG 1 cut(s) 656
XapI RAATTY 6 cut(s) 120, 525, 713, 940, 1025, 1089
XceI RCATGY 1 cut(s) 571
XmiI GTMKAC 1 cut(s) 40
XspI CTAG 1 cut(s) 857
ZrmI AGTACT 1 cut(s) 1106
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.