pycom05g07750

Thioredoxin M3

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
10597280 .. 10600070
2791 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2127 bp
ATGGAGATATTATCTAGAAAAATGGACAGTTTATATGGACAGGTATGGGGCCCGTGGTTCCTAAGTTTTGGACATGCCTCGCCCCCTATTTACATCCACGCCCCACCCAGTTTCTTTTCTAGTAAATTCATACCCGCCCCGAACCCTGCCTCGAATAGCAACTACTCGACCCCGCGGGTCTTTGACCCGTTTGCTCACCCCTGTCACATAGTTCCTCTCTGTGTGTGTATAATCTTTGCATTCTTTAGACTTTTAGGGGGCTGGAAAAAATTCCCAAAAATTCTAACCAAACCAAAAAAATCCCGATCCCAAACCAAAATTCCTAAAATTTTCGGGATAAAATACCGAACCGATCCCAAAATTTTGGTACGAGATTCGGTATTGTCTACTCAATCTTTCGATATTGGAATAGGATCAATGGACAAATATTTTTACACTCTTTTTAATTTAAATAATATTAAAGATAAAATAAAATTGAAAAAAAAACATAAAATCTGGAAAATTAAAACTAAAATAAAAAAAAAAGGAAGAAACTCTAGTTGTACGCATTCCTCTGTCTCCCCCTTTGTTGATGTGGTTTTGCAACTTCATGTTTCAGATCGATACGAAATTCTGATGCCTTCTACAAGGAGTCAATTCTATATTATTGTTTATATATGCGGGGTGATTAAATTATGTTTTGCAAAAAAAGGAAAAAAAAAAAAAAAACAATTAGTTTTGTTAGTTCTTGTGTTTCAATTGAACTCGAACTTATGTTCTAGGGTTTTAATGTCAGTGCACATCTTCTATATTGAATTTGAGGAGTTGAGCAATAGGGGTAGTTGGAATTTTTGCAGCGGGGGTAGTTGCGATTTCTGTAGCTCTCGTTTCAATTTTCCAACCATCTTGTCAACCCCAACCTACAGCAGAACCTACAACATGAAGTTGCAAATCCACATCAGCAAAGGGGGAGACAGAGGATTGTTTTCTAGATTTTATGTTTTTTTCAATTTTATTTTATCTATAATAATAAGGAAAACTAATGAAAATGGCTTGAAAACTTTGAGTTTTAACTATAAGGACAAAATAAAAGGTAAAGTGAATAGTACCAGGATTGACTTTTTAGTTTTTTTGTTAAAAATAATTGGATATCCTGTAATCAAAAGGCTAAAAAAGAGTGTAAAATTATTTCACTCTAAAAATCTCATTTGGTACTCCAAACTTTCTATAATTAGAAAGAAAAATACACTTGTGAGGAGTGTAGAATGTGATTTTTGGAAACAATTCCCTATATATTATATTTATATATGTATTATTATACATTTGAATTGTTTTGCTAGTACGAACCTCCCACAAATGTGTCTATTTCTTCAACACGAAACTAACATATTAGGTTTGTATCTTAGTATTTTGTTTTTGGGTTTGTTACTTATTTTATTTTGTTGTATGAAATTTGGGAATACCAAACCATCCCAAAATACCGAAAATATTTCGGGATTCCCAAAAATTGGGAATACCAAAATTTTGGCTTGGGATTGGTCTGCAAATTCCCGTCTCGAAAATTTTCAGTTTGGGATTCGGGATCCCATTTTCGGTTTGGATCGATCCTACACCGAATCATCCCTAAACTTCAATGCCCAAATCTACAATTTTTATTTGCTCGAAATTTGGAAAGTAGGTACGAATTTAGTCAGTCCTCTTAATCGAACTTATATAAATTTTCATCGATTTCCTTATAAATTCTCAATTTCTCACATAAATCCCCAATTACCCATTAACCAGCTTCTTTCCTTCTTCCCACGTTGGCTTAACATAGATGTTGATTTGCAGGTTGTTGAGGACTATGAAATTAAGGTTGTGCTTGTAGTTTTGCTGTTCAAGAATGGGAAGAAATGTGAATCTGAGGGTTCTGAAGTCCTAACCTTTTTTTTTCAATTCGTGCCAACGAAGTTAACAACAATAAATAAAGTAATTGATTTTTTCCAACATGTTATTCATAAGGATTCCTATCACTTTAGTGCGTATTCAAATGACACTATACAGGTTGTGTTAGTTACCATCATCTCATCATTTTGTGCACCTCTTCTATCTTTTGAGTTTTTACCCAGTCTTTTTTTGGTTGAGGCATTTGTTGAAATTGTTCTGTAA

Protein Analysis

709

Amino Acids

82.16

Weight (kDa)

9.72

Isoelectric Point (pI)

39.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1716
Acc36I ACCTGC 1 cut(s) 1798
AccB7I CCANNNNNTGG 1 cut(s) 1487
AccI GTMKAC 1 cut(s) 386
AccII CGCG 1 cut(s) 175
AciI CCGC 5 cut(s) 135, 173, 175, 660, 837
AclWI GGATC 7 cut(s) 300, 347, 421, 1556, 1569, 1578, 1587
AcuI CTGAAG 1 cut(s) 1911
AfaI GTAC 6 cut(s) 369, 544, 1087, 1193, 1321, 1660
AfiI CCNNNNNNNGG 2 cut(s) 1487, 1571
AflIII ACRYGT 1 cut(s) 1966
AjnI CCWGG 1 cut(s) 1088
AjuI GAANNNNNNNTTGG 4 cut(s) 303, 335, 1956, 1988
AleI CACNNNNGTG 2 cut(s) 1336, 1995
AluBI AGCT 2 cut(s) 861, 1762
AluI AGCT 2 cut(s) 861, 1762
Alw21I GWGCWC 2 cut(s) 780, 2059
Alw26I GTCTC 3 cut(s) 562, 945, 1538
Alw44I GTGCAC 2 cut(s) 776, 2055
AlwI GGATC 7 cut(s) 300, 347, 421, 1556, 1569, 1578, 1587
AoxI GGCC 1 cut(s) 49
ApaI GGGCCC 1 cut(s) 53
ApaLI GTGCAC 2 cut(s) 776, 2055
ApeKI GCWGC 1 cut(s) 834
Asp700I GAANNNNTTC 4 cut(s) 269, 1262, 1542, 2118
AspS9I GGNCC 2 cut(s) 49, 50
AsuHPI GGTGA 2 cut(s) 188, 676
BaeGI GKGCMC 3 cut(s) 53, 780, 2059
BamHI GGATCC 1 cut(s) 1561
BanII GRGCYC 1 cut(s) 53
Bbv12I GWGCWC 2 cut(s) 780, 2059
BbvI GCAGC 1 cut(s) 846
BccI CCATC 3 cut(s) 890, 1456, 2045
BciT130I CCWGG 1 cut(s) 1090
BcoDI GTCTC 3 cut(s) 562, 945, 1538
BfaI CTAG 6 cut(s) 15, 120, 537, 759, 969, 1317
BfmI CTRYAG 2 cut(s) 856, 901
BfuAI ACCTGC 1 cut(s) 1798
BisI GCNGC 1 cut(s) 835
BlsI GCNGC 1 cut(s) 836
Bme1390I CCNGG 1 cut(s) 1090
BmgT120I GGNCC 2 cut(s) 49, 50
BmiI GGNNCC 4 cut(s) 50, 51, 59, 1563
BmrFI CCNGG 1 cut(s) 1090
BmrI ACTGGG 2 cut(s) 102, 2079
BmsI GCATC 1 cut(s) 606
BmuI ACTGGG 2 cut(s) 102, 2079
Bsa29I ATCGAT 3 cut(s) 601, 1582, 1705
BsaBI GATNNNNATC 1 cut(s) 1986
BsaJI CCNNGG 2 cut(s) 53, 173
Bsc4I CCNNNNNNNGG 2 cut(s) 1487, 1571
Bse1I ACTGG 2 cut(s) 108, 2085
Bse8I GATNNNNATC 1 cut(s) 1986
BseBI CCWGG 1 cut(s) 1090
BseCI ATCGAT 3 cut(s) 601, 1582, 1705
BseDI CCNNGG 2 cut(s) 53, 173
BseGI GGATG 3 cut(s) 93, 1448, 1598
BseJI GATNNNNATC 1 cut(s) 1986
BseLI CCNNNNNNNGG 2 cut(s) 1487, 1571
BseMII CTCAG 1 cut(s) 1872
BseNI ACTGG 2 cut(s) 108, 2085
BseRI GAGGAG 2 cut(s) 815, 1249
BseSI GKGCMC 3 cut(s) 53, 780, 2059
BseXI GCAGC 1 cut(s) 846
Bsh1236I CGCG 1 cut(s) 175
BshFI GGCC 1 cut(s) 51
BshVI ATCGAT 3 cut(s) 601, 1582, 1705
BsiHKAI GWGCWC 2 cut(s) 780, 2059
BslI CCNNNNNNNGG 2 cut(s) 1487, 1571
BsmAI GTCTC 3 cut(s) 562, 945, 1538
BsmBI CGTCTC 1 cut(s) 1538
BsmI GAATGC 2 cut(s) 239, 547
BsnI GGCC 1 cut(s) 51
Bsp120I GGGCCC 1 cut(s) 49
Bsp1286I GDGCHC 3 cut(s) 53, 780, 2059
Bsp143I GATC 7 cut(s) 305, 352, 413, 598, 1561, 1579, 1583
BspACI CCGC 5 cut(s) 135, 173, 175, 660, 837
BspANI GGCC 1 cut(s) 51
BspCNI CTCAG 1 cut(s) 1873
BspDI ATCGAT 3 cut(s) 601, 1582, 1705
BspFNI CGCG 1 cut(s) 175
BspLI GGNNCC 4 cut(s) 50, 51, 59, 1563
BspMI ACCTGC 1 cut(s) 1798
BspPI GGATC 7 cut(s) 300, 347, 421, 1556, 1569, 1578, 1587
BsrI ACTGG 2 cut(s) 108, 2085
BssECI CCNNGG 2 cut(s) 53, 173
BssMI GATC 7 cut(s) 305, 352, 413, 598, 1561, 1579, 1583
Bst2UI CCWGG 1 cut(s) 1090
Bst4CI ACNGT 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 2067
BstDEI CTNAG 3 cut(s) 62, 1382, 1881
BstDSI CCRYGG 2 cut(s) 53, 173
BstF5I GGATG 3 cut(s) 93, 1448, 1598
BstFNI CGCG 1 cut(s) 175
BstKTI GATC 7 cut(s) 308, 355, 416, 601, 1564, 1582, 1586
BstMAI GTCTC 3 cut(s) 562, 945, 1538
BstMBI GATC 7 cut(s) 305, 352, 413, 598, 1561, 1579, 1583
BstNI CCWGG 1 cut(s) 1090
BstNSI RCATGY 2 cut(s) 77, 1970
BstSCI CCNGG 1 cut(s) 1088
BstSFI CTRYAG 2 cut(s) 856, 901
BstSLI GKGCMC 3 cut(s) 53, 780, 2059
BstUI CGCG 1 cut(s) 175
BstV1I GCAGC 1 cut(s) 846
BstX2I RGATCY 1 cut(s) 1561
BstXI CCANNNNNNTGG 2 cut(s) 364, 1504
BstYI RGATCY 1 cut(s) 1561
Bsu15I ATCGAT 3 cut(s) 601, 1582, 1705
BsuRI GGCC 1 cut(s) 51
BsuTUI ATCGAT 3 cut(s) 601, 1582, 1705
BtgI CCRYGG 2 cut(s) 53, 173
BtsCI GGATG 3 cut(s) 93, 1448, 1598
BtsIMutI CAGTG 1 cut(s) 780
BveI ACCTGC 1 cut(s) 1798
Cfr13I GGNCC 2 cut(s) 49, 50
Cfr42I CCGCGG 1 cut(s) 176
ClaI ATCGAT 3 cut(s) 601, 1582, 1705
Csp6I GTAC 6 cut(s) 368, 543, 1086, 1192, 1320, 1659
CviAII CATG 4 cut(s) 74, 590, 919, 1967
CviJI RGCY 8 cut(s) 51, 261, 861, 1032, 1147, 1508, 1762, 1786
CviKI_1 RGCY 8 cut(s) 51, 261, 861, 1032, 1147, 1508, 1762, 1786
CviQI GTAC 6 cut(s) 368, 543, 1086, 1192, 1320, 1659
DdeI CTNAG 3 cut(s) 62, 1382, 1881
DpnI GATC 7 cut(s) 307, 354, 415, 600, 1563, 1581, 1585
DpnII GATC 7 cut(s) 305, 352, 413, 598, 1561, 1579, 1583
DraI TTTAAA 1 cut(s) 450
Eam1104I CTCTTC 1 cut(s) 2067
EarI CTCTTC 1 cut(s) 2067
Eco24I GRGCYC 1 cut(s) 53
Eco32I GATATC 1 cut(s) 1130
Eco57I CTGAAG 1 cut(s) 1911
EcoO109I RGGNCCY 1 cut(s) 49
EcoRII CCWGG 1 cut(s) 1088
EcoRV GATATC 1 cut(s) 1130
EcoT38I GRGCYC 1 cut(s) 53
Esp3I CGTCTC 1 cut(s) 1538
FaeI CATG 4 cut(s) 77, 593, 922, 1970
FatI CATG 4 cut(s) 73, 589, 918, 1966
FauI CCCGC 5 cut(s) 142, 168, 180, 653, 830
FblI GTMKAC 1 cut(s) 386
Fnu4HI GCNGC 1 cut(s) 835
FokI GGATG 3 cut(s) 80, 1435, 1585
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 835
FspBI CTAG 6 cut(s) 15, 120, 537, 759, 969, 1317
GluI GCNGC 1 cut(s) 835
HaeIII GGCC 1 cut(s) 51
Hin1II CATG 4 cut(s) 77, 593, 922, 1970
HincII GTYRAC 2 cut(s) 891, 1932
HindII GTYRAC 2 cut(s) 891, 1932
HinfI GANTC 7 cut(s) 374, 631, 1476, 1555, 1595, 1877, 1982
HpaI GTTAAC 1 cut(s) 1932
HphI GGTGA 2 cut(s) 188, 676
Hpy166II GTNNAC 5 cut(s) 387, 778, 891, 1932, 2057
Hpy188I TCNGA 4 cut(s) 598, 615, 1882, 1891
Hpy188III TCNNGA 9 cut(s) 15, 303, 334, 496, 969, 1473, 1535, 1559, 1858
Hpy8I GTNNAC 5 cut(s) 387, 778, 891, 1932, 2057
HpyAV CCTTC 2 cut(s) 630, 1780
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4IV ACGT 1 cut(s) 1780
HpyCH4V TGCA 9 cut(s) 239, 583, 683, 778, 834, 928, 1523, 1807, 2057
HpyF3I CTNAG 3 cut(s) 62, 1382, 1881
HpySE526I ACGT 1 cut(s) 1780
Hsp92II CATG 4 cut(s) 77, 593, 922, 1970
KspAI GTTAAC 1 cut(s) 1932
KspI CCGCGG 1 cut(s) 176
Kzo9I GATC 7 cut(s) 305, 352, 413, 598, 1561, 1579, 1583
Lsp1109I GCAGC 1 cut(s) 846
LweI GCATC 1 cut(s) 606
MaeI CTAG 6 cut(s) 15, 120, 537, 759, 969, 1317
MaeII ACGT 1 cut(s) 1780
MaeIII GTNAC 3 cut(s) 203, 1404, 2032
MalI GATC 7 cut(s) 307, 354, 415, 600, 1563, 1581, 1585
MboI GATC 7 cut(s) 305, 352, 413, 598, 1561, 1579, 1583
MboII GAAGA 6 cut(s) 540, 775, 1340, 1765, 1879, 2054
MfeI CAATTG 1 cut(s) 737
MflI RGATCY 1 cut(s) 1561
MhlI GDGCHC 3 cut(s) 53, 780, 2059
MlyI GAGTC 1 cut(s) 640
MmeI TCCRAC 3 cut(s) 803, 902, 1987
MroXI GAANNNNTTC 4 cut(s) 269, 1262, 1542, 2118
MslI CAYNNNNRTG 2 cut(s) 1336, 1995
MspA1I CMGCKG 2 cut(s) 175, 837
MspR9I CCNGG 1 cut(s) 1090
MunI CAATTG 1 cut(s) 737
Mva1269I GAATGC 2 cut(s) 239, 547
MvaI CCWGG 1 cut(s) 1090
MvnI CGCG 1 cut(s) 175
NdeII GATC 7 cut(s) 305, 352, 413, 598, 1561, 1579, 1583
NlaIII CATG 4 cut(s) 77, 593, 922, 1970
NlaIV GGNNCC 4 cut(s) 50, 51, 59, 1563
NmuCI GTSAC 1 cut(s) 203
NspI RCATGY 2 cut(s) 77, 1970
OliI CACNNNNGTG 2 cut(s) 1336, 1995
PciI ACATGT 1 cut(s) 1966
PctI GAATGC 2 cut(s) 239, 547
PdmI GAANNNNTTC 4 cut(s) 269, 1262, 1542, 2118
PfeI GAWTC 6 cut(s) 374, 1476, 1555, 1595, 1877, 1982
PflMI CCANNNNNTGG 1 cut(s) 1487
PkrI GCNGC 1 cut(s) 836
PleI GAGTC 1 cut(s) 639
PpsI GAGTC 1 cut(s) 639
PscI ACATGT 1 cut(s) 1966
PsiI TTATAA 1 cut(s) 1716
Psp6I CCWGG 1 cut(s) 1088
PspGI CCWGG 1 cut(s) 1088
PspN4I GGNNCC 4 cut(s) 50, 51, 59, 1563
PspOMI GGGCCC 1 cut(s) 49
PspPI GGNCC 2 cut(s) 49, 50
PsuI RGATCY 1 cut(s) 1561
RsaI GTAC 6 cut(s) 369, 544, 1087, 1193, 1321, 1660
RsaNI GTAC 6 cut(s) 368, 543, 1086, 1192, 1320, 1659
RseI CAYNNNNRTG 2 cut(s) 1336, 1995
SacII CCGCGG 1 cut(s) 176
SatI GCNGC 1 cut(s) 835
Sau3AI GATC 7 cut(s) 305, 352, 413, 598, 1561, 1579, 1583
Sau96I GGNCC 2 cut(s) 49, 50
SchI GAGTC 1 cut(s) 640
ScrFI CCNGG 1 cut(s) 1090
SduI GDGCHC 3 cut(s) 53, 780, 2059
SfaNI GCATC 1 cut(s) 606
SfcI CTRYAG 2 cut(s) 856, 901
Sfr303I CCGCGG 1 cut(s) 176
SgrBI CCGCGG 1 cut(s) 176
SmiI ATTTAAAT 1 cut(s) 450
SmiMI CAYNNNNRTG 2 cut(s) 1336, 1995
SsiI CCGC 5 cut(s) 135, 173, 175, 660, 837
SspI AATATT 3 cut(s) 428, 457, 1468
SspMI CTAG 6 cut(s) 15, 120, 537, 759, 969, 1317
StyD4I CCNGG 1 cut(s) 1088
SwaI ATTTAAAT 1 cut(s) 450
TaaI ACNGT 1 cut(s) 29
TaiI ACGT 1 cut(s) 1783
TfiI GAWTC 6 cut(s) 374, 1476, 1555, 1595, 1877, 1982
TscAI CASTG 1 cut(s) 780
TseFI GTSAC 1 cut(s) 203
TseI GCWGC 1 cut(s) 834
Tsp45I GTSAC 1 cut(s) 203
TspDTI ATGAA 8 cut(s) 118, 578, 935, 1038, 1442, 1691, 1839, 1964
TspRI CASTG 1 cut(s) 780
Van91I CCANNNNNTGG 1 cut(s) 1487
VneI GTGCAC 2 cut(s) 776, 2055
XbaI TCTAGA 2 cut(s) 14, 968
XceI RCATGY 2 cut(s) 77, 1970
XcmI CCANNNNNNNNNTGG 2 cut(s) 1573, 2092
XmiI GTMKAC 1 cut(s) 386
XmnI GAANNNNTTC 4 cut(s) 269, 1262, 1542, 2118
XspI CTAG 6 cut(s) 15, 120, 537, 759, 969, 1317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.