pycom05g07850

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
N/A
Physical Location & Seq
Forward (+)
10651865 .. 10653312
1448 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1056 bp
ATGAACCACCAAATGATGTTGGCCATCTTTAATTCTTATTTAAAGATGAAGCTTCTTGCAGTTGCTGACACACAATTTGCTTCCATGATTGTGATGATGAGGAGATATAAGGAAATAAAGCGTGACTTACAAGGAATGGTGATCACTAGAAGCATCAAAGAGAAAATGTTAAGCGACAAGCTTTGGTGTGACCTTAAATGCATACTTAGTTTTACATCTCCTATTTATTCTATGCTTAGAATTTGTGACATCGATATTCCGTGTCTTCACTTGGTTTATGAATGGAGAAAAAAAAAAAAAAAAACAAGGAGGTTGATGAGCAATCAGAATTCTTTTATACTGTGCATAAGGTTGCCTTGCACATTCTTTAAATCCAAGGTAACTTTCTTGAGAGTTTTAGTAAATTTATTTAATTGTATACCAATGAGTCGCTTGTTCGTGCTCCAAATCAAGAAAAAAAAAGCTTTGAGTGTTACTTTGCTAATAGTGTGGAGAGAAGAAGATTTTTCAAGTAGTGATGCTATGAGTGATAGATTTCCAGTGCAACTAGTGAAGTGGTCGTTCATCCATGGAGCTTCTACTCCAACTCTTCAAGATTTGAAGCTTCTTGGACATATTAAGTTTAATGTTTTGTTGCATTATTATTCAAACTGCTGTAATAGCAGTTGTTGTTTTATATACATCTTACACACACGCATGCATTTAAACAATTGCATGCTGCAACACATCAGAGCATGTGTTCCTTCTGCTGTAAAGGTGGCGTGCTGTCTGACAAGGAATATGTGCAGTATTCCTTCTGTCCAGGTCACATGGGCAAGTTCTCTCAACACTCCCCTTCAAGTTTGGAATGAATGTCGGCTGGTTGTTTCATGGTTGAGATGTGAGATGTCTCGATCATTCCACTTTGAACCATTTCTCGTACAAGGTGGCAGTCAATCTCTATGTGTTTGGTTCTTTCGTGAAAGACCGGATTCGAAGCGATGTGAAGTGCCGCTTGATTATCACAATATAAACAGATTTCAACCAAGTGACTTCACAACAAGTTGCTGCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

352

Amino Acids

41.17

Weight (kDa)

9.44

Isoelectric Point (pI)

57.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 418
AciI CCGC 1 cut(s) 992
AcoI YGGCCR 1 cut(s) 21
AcsI RAATTY 3 cut(s) 240, 328, 403
AfaI GTAC 1 cut(s) 921
AgsI TTSAA 7 cut(s) 510, 593, 601, 648, 839, 908, 1022
AhlI ACTAGT 1 cut(s) 547
AjnI CCWGG 1 cut(s) 801
AjuI GAANNNNNNNTTGG 2 cut(s) 368, 400
AluBI AGCT 5 cut(s) 52, 181, 464, 575, 604
AluI AGCT 5 cut(s) 52, 181, 464, 575, 604
Alw21I GWGCWC 1 cut(s) 444
Alw26I GTCTC 1 cut(s) 894
AlwNI CAGNNNCTG 1 cut(s) 65
AoxI GGCC 1 cut(s) 21
ApeKI GCWGC 2 cut(s) 718, 1047
ApoI RAATTY 3 cut(s) 240, 328, 403
ArsI GACNNNNNNTTYG 2 cut(s) 59, 91
Asp700I GAANNNNTTC 1 cut(s) 912
AsuHPI GGTGA 1 cut(s) 151
AsuII TTCGAA 1 cut(s) 974
BalI TGGCCA 1 cut(s) 23
BbsI GAAGAC 1 cut(s) 257
Bbv12I GWGCWC 1 cut(s) 444
BbvI GCAGC 2 cut(s) 705, 1034
BccI CCATC 1 cut(s) 32
BciT130I CCWGG 1 cut(s) 803
BclI TGATCA 1 cut(s) 141
BcoDI GTCTC 1 cut(s) 894
BcuI ACTAGT 1 cut(s) 547
BfaI CTAG 2 cut(s) 147, 548
BisI GCNGC 3 cut(s) 719, 992, 1048
BlsI GCNGC 3 cut(s) 720, 993, 1049
Bme1390I CCNGG 1 cut(s) 803
BmrFI CCNGG 1 cut(s) 803
BmsI GCATC 2 cut(s) 162, 508
BpiI GAAGAC 1 cut(s) 257
Bpu14I TTCGAA 1 cut(s) 974
BpuEI CTTGAG 1 cut(s) 409
Bsa29I ATCGAT 1 cut(s) 252
BsaJI CCNNGG 2 cut(s) 375, 568
BsaWI WCCGGW 1 cut(s) 967
Bse1I ACTGG 1 cut(s) 539
BseBI CCWGG 1 cut(s) 803
BseCI ATCGAT 1 cut(s) 252
BseDI CCNNGG 2 cut(s) 375, 568
BseGI GGATG 1 cut(s) 564
BseNI ACTGG 1 cut(s) 539
BseRI GAGGAG 1 cut(s) 115
BseXI GCAGC 2 cut(s) 705, 1034
BsgI GTGCAG 1 cut(s) 805
BshFI GGCC 1 cut(s) 23
BshVI ATCGAT 1 cut(s) 252
BsiHKAI GWGCWC 1 cut(s) 444
BsiSI CCGG 1 cut(s) 968
BsmAI GTCTC 1 cut(s) 894
BsnI GGCC 1 cut(s) 23
Bsp119I TTCGAA 1 cut(s) 974
Bsp1286I GDGCHC 1 cut(s) 444
Bsp143I GATC 2 cut(s) 141, 893
Bsp19I CCATGG 1 cut(s) 568
BspACI CCGC 1 cut(s) 992
BspANI GGCC 1 cut(s) 23
BspDI ATCGAT 1 cut(s) 252
BspT104I TTCGAA 1 cut(s) 974
BsrI ACTGG 1 cut(s) 539
BssECI CCNNGG 2 cut(s) 375, 568
BssMI GATC 2 cut(s) 141, 893
BssNAI GTATAC 1 cut(s) 419
BssT1I CCWWGG 2 cut(s) 375, 568
Bst1107I GTATAC 1 cut(s) 419
Bst2UI CCWGG 1 cut(s) 803
Bst4CI ACNGT 1 cut(s) 342
Bst6I CTCTTC 1 cut(s) 594
BstBI TTCGAA 1 cut(s) 974
BstC8I GCNNGC 3 cut(s) 698, 716, 763
BstDEI CTNAG 2 cut(s) 206, 236
BstDSI CCRYGG 1 cut(s) 568
BstF5I GGATG 1 cut(s) 564
BstKTI GATC 2 cut(s) 144, 896
BstMAI GTCTC 1 cut(s) 894
BstMBI GATC 2 cut(s) 141, 893
BstMWI GCNNNNNNNGC 1 cut(s) 660
BstNI CCWGG 1 cut(s) 803
BstNSI RCATGY 3 cut(s) 700, 718, 738
BstSCI CCNGG 1 cut(s) 801
BstV1I GCAGC 2 cut(s) 705, 1034
BstV2I GAAGAC 1 cut(s) 257
BstZ17I GTATAC 1 cut(s) 419
Bsu15I ATCGAT 1 cut(s) 252
BsuRI GGCC 1 cut(s) 23
BsuTUI ATCGAT 1 cut(s) 252
BtgI CCRYGG 1 cut(s) 568
BtgZI GCGATG 1 cut(s) 994
BtsCI GGATG 1 cut(s) 564
BtsIMutI CAGTG 1 cut(s) 546
Cac8I GCNNGC 3 cut(s) 698, 716, 763
CaiI CAGNNNCTG 1 cut(s) 65
ClaI ATCGAT 1 cut(s) 252
Csp6I GTAC 1 cut(s) 920
CviAII CATG 7 cut(s) 85, 569, 697, 715, 735, 810, 870
CviJI RGCY 7 cut(s) 23, 52, 181, 464, 575, 604, 859
CviKI_1 RGCY 7 cut(s) 23, 52, 181, 464, 575, 604, 859
CviQI GTAC 1 cut(s) 920
DdeI CTNAG 2 cut(s) 206, 236
DpnI GATC 2 cut(s) 143, 895
DpnII GATC 2 cut(s) 141, 893
DraI TTTAAA 3 cut(s) 42, 370, 705
EaeI YGGCCR 1 cut(s) 21
Eam1104I CTCTTC 1 cut(s) 594
EarI CTCTTC 1 cut(s) 594
Eco130I CCWWGG 2 cut(s) 375, 568
EcoRI GAATTC 1 cut(s) 328
EcoRII CCWGG 1 cut(s) 801
EcoT14I CCWWGG 2 cut(s) 375, 568
EcoT22I ATGCAT 2 cut(s) 203, 702
ErhI CCWWGG 2 cut(s) 375, 568
FaeI CATG 7 cut(s) 88, 572, 700, 718, 738, 813, 873
FalI AAGNNNNNCTT 6 cut(s) 110, 142, 340, 372, 978, 1010
FatI CATG 7 cut(s) 84, 568, 696, 714, 734, 809, 869
FbaI TGATCA 1 cut(s) 141
FblI GTMKAC 1 cut(s) 418
Fnu4HI GCNGC 3 cut(s) 719, 992, 1048
FokI GGATG 1 cut(s) 551
Fsp4HI GCNGC 3 cut(s) 719, 992, 1048
FspBI CTAG 2 cut(s) 147, 548
GluI GCNGC 3 cut(s) 719, 992, 1048
HaeIII GGCC 1 cut(s) 23
HapII CCGG 1 cut(s) 968
Hin1II CATG 7 cut(s) 88, 572, 700, 718, 738, 813, 873
HindIII AAGCTT 4 cut(s) 50, 179, 462, 602
HinfI GANTC 2 cut(s) 427, 971
HpaII CCGG 1 cut(s) 968
HphI GGTGA 1 cut(s) 151
Hpy166II GTNNAC 1 cut(s) 419
Hpy188I TCNGA 3 cut(s) 327, 731, 771
Hpy188III TCNNGA 5 cut(s) 388, 451, 593, 891, 959
Hpy8I GTNNAC 1 cut(s) 419
HpyAV CCTTC 3 cut(s) 753, 804, 845
HpyCH4III ACNGT 1 cut(s) 342
HpyF10VI GCNNNNNNNGC 1 cut(s) 660
HpyF3I CTNAG 2 cut(s) 206, 236
Hsp92II CATG 7 cut(s) 88, 572, 700, 718, 738, 813, 873
Ksp22I TGATCA 1 cut(s) 141
Kzo9I GATC 2 cut(s) 141, 893
LmnI GCTCC 2 cut(s) 447, 572
LpnPI CCDG 5 cut(s) 552, 788, 815, 845, 981
Lsp1109I GCAGC 2 cut(s) 705, 1034
LweI GCATC 2 cut(s) 162, 508
MaeI CTAG 2 cut(s) 147, 548
MaeIII GTNAC 7 cut(s) 122, 188, 245, 379, 472, 805, 1028
MalI GATC 2 cut(s) 143, 895
MboI GATC 2 cut(s) 141, 893
MboII GAAGA 4 cut(s) 257, 509, 512, 581
MfeI CAATTG 1 cut(s) 709
MhlI GDGCHC 1 cut(s) 444
MlsI TGGCCA 1 cut(s) 23
MluCI AATT 7 cut(s) 31, 74, 240, 328, 403, 412, 709
MluNI TGGCCA 1 cut(s) 23
MlyI GAGTC 1 cut(s) 436
MmeI TCCRAC 1 cut(s) 608
MnlI CCTC 2 cut(s) 93, 303
Mox20I TGGCCA 1 cut(s) 23
Mph1103I ATGCAT 2 cut(s) 203, 702
MroXI GAANNNNTTC 1 cut(s) 912
MscI TGGCCA 1 cut(s) 23
MseI TTAA 9 cut(s) 30, 41, 170, 195, 369, 411, 618, 624, 704
MslI CAYNNNNRTG 2 cut(s) 89, 695
Msp20I TGGCCA 1 cut(s) 23
MspI CCGG 1 cut(s) 968
MspR9I CCNGG 1 cut(s) 803
MunI CAATTG 1 cut(s) 709
MvaI CCWGG 1 cut(s) 803
MwoI GCNNNNNNNGC 1 cut(s) 660
NcoI CCATGG 1 cut(s) 568
NdeII GATC 2 cut(s) 141, 893
NlaIII CATG 7 cut(s) 88, 572, 700, 718, 738, 813, 873
NmuCI GTSAC 5 cut(s) 122, 188, 245, 805, 1028
NsiI ATGCAT 2 cut(s) 203, 702
NspI RCATGY 3 cut(s) 700, 718, 738
NspV TTCGAA 1 cut(s) 974
PaeI GCATGC 2 cut(s) 700, 718
PdmI GAANNNNTTC 1 cut(s) 912
PfeI GAWTC 1 cut(s) 971
PkrI GCNGC 3 cut(s) 720, 993, 1049
PleI GAGTC 1 cut(s) 435
PpsI GAGTC 1 cut(s) 435
Psp6I CCWGG 1 cut(s) 801
PspGI CCWGG 1 cut(s) 801
PstNI CAGNNNCTG 1 cut(s) 65
RsaI GTAC 1 cut(s) 921
RsaNI GTAC 1 cut(s) 920
RseI CAYNNNNRTG 2 cut(s) 89, 695
SaqAI TTAA 9 cut(s) 30, 41, 170, 195, 369, 411, 618, 624, 704
SatI GCNGC 3 cut(s) 719, 992, 1048
Sau3AI GATC 2 cut(s) 141, 893
SchI GAGTC 1 cut(s) 436
ScrFI CCNGG 1 cut(s) 803
SduI GDGCHC 1 cut(s) 444
SfaNI GCATC 2 cut(s) 162, 508
SfuI TTCGAA 1 cut(s) 974
SmiMI CAYNNNNRTG 2 cut(s) 89, 695
SmlI CTYRAG 1 cut(s) 388
SmoI CTYRAG 1 cut(s) 388
SpeI ACTAGT 1 cut(s) 547
SphI GCATGC 2 cut(s) 700, 718
Sse9I AATT 7 cut(s) 31, 74, 240, 328, 403, 412, 709
SsiI CCGC 1 cut(s) 992
SspMI CTAG 2 cut(s) 147, 548
StyD4I CCNGG 1 cut(s) 801
StyI CCWWGG 2 cut(s) 375, 568
TaaI ACNGT 1 cut(s) 342
TaqI TCGA 3 cut(s) 252, 892, 974
TasI AATT 7 cut(s) 31, 74, 240, 328, 403, 412, 709
TauI GCSGC 1 cut(s) 994
TfiI GAWTC 1 cut(s) 971
Tru1I TTAA 9 cut(s) 30, 41, 170, 195, 369, 411, 618, 624, 704
Tru9I TTAA 9 cut(s) 30, 41, 170, 195, 369, 411, 618, 624, 704
TscAI CASTG 1 cut(s) 546
TseFI GTSAC 5 cut(s) 122, 188, 245, 805, 1028
TseI GCWGC 2 cut(s) 718, 1047
Tsp45I GTSAC 5 cut(s) 122, 188, 245, 805, 1028
TspDTI ATGAA 6 cut(s) 17, 62, 294, 553, 858, 864
TspGWI ACGGA 1 cut(s) 249
TspRI CASTG 1 cut(s) 546
XapI RAATTY 3 cut(s) 240, 328, 403
XceI RCATGY 3 cut(s) 700, 718, 738
XmiI GTMKAC 1 cut(s) 418
XmnI GAANNNNTTC 1 cut(s) 912
XspI CTAG 2 cut(s) 147, 548
Zsp2I ATGCAT 2 cut(s) 203, 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.